The peroxidases and oxidases database
Entry information : SmAPx01-2_8 (SmAPx01b_8)
Entry ID 7195
Creation 2010-02-09 (Christophe Dunand)
Last sequence changes 2010-02-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmAPx01-2_8 (SmAPx01b_8)
Name (synonym) SmAPx01-2_8 (SmAPx01b_8)
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation Cytosolic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx01-2_8
start..stop		 S start..stop
SmAPx01-1_0 514 0 1..250 1..250
SstaAPx 512 0 1..250 1..250
SapAPx01 475 6e-173 1..250 1..250
SlAPx01 473 5e-172 1..250 1..250
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3127159..3127243 85 N° 2 3127314..3127347 34 N° 3 3127420..3127594 175 N° 4 3127732..3127797 66
N° 5 3127873..3128007 135 N° 6 3128068..3128147 80 N° 7 3128203..3128305 103 N° 8 3128367..3128441 75
join(3127159..3127243,3127314..3127347,3127420..3127594,3127732..3127797,3127873 ..3128007,3128068..3128147,3128203..3128305,3128367..3128441)


exon

Literature and cross-references SmAPx01-2_8 (SmAPx01b_8)
DNA ref. Phytozome 12:   scaffold_8 (3127159..3128441)
mRNA ref. JGI transcript:   144791
EST ref. GenBank:   FE456255.1
Protein sequence: SmAPx01-2_8 (SmAPx01b_8)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   250
PWM (Da):   %s   27399.97  
PI (pH):   %s   6.24
Sequence 441
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGKSYPAVSEEYKAAVEKAKRKLRGFIAEKNCAPLILRLAWHSAGTYDCQSKTGGPFGTMKLAEELGHTANNGLDIAVKLLQPIKDQFPILSYGDFYLAGVVAVEVTGGPEIPFHPGRVDKPTCPMEGRLPDATKGADHLRDVFVKHMGLTDKDIVALSGGHTLGRAHKERSGFEGPWTHNPLQFDNSYFTILLSGEQEGILTLPTDKVLVEDPSFRPLVELYADEEAFFKDYTEAHLKLSELGFAEE*

Retrieve as FASTA  
Remarks Complete sequence from genomic (7 introns and 1 extra intron in 5'UTR) and ESTs (DN839337.1, FE434322.1, FE429588.1, FE456256.1).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAAATCTTACCCGGCCGTGAGCGAGGAGTACAAGGCCGCCGTGGAGAAGGCCAAGAGGAAGCTCCGCGGCTTCATCGCAGGCAAGATCGGCGGATCGAAGCTTGAAATTTCTAGT
CTTTCTGACCCTTTGTTTCCAATATTTTCTCGCAGAGAAGAACTGTGCGCCATTGATTCTCCGCCTTGCGTAAGTCTCTTGTCCTCTTTTTCTTTGGTTTCGCCTCTTCTTGTAAAGCTC
ACGGCTCGCGTTGTGGAATAGATGGCACTCGGCGGGAACTTACGATTGCCAGTCCAAGACCGGTGGTCCTTTTGGCACCATGAAGCTCGCTGAGGAGCTTGGCCATACCGCGAACAATGG
TCTCGACATCGCCGTGAAGCTGCTACAGCCAATCAAGGACCAGTTCCCCATCTTGAGCTATGGCGACTTCTATCAGGTAAAGACTCGTCTTTGTTTGCTTTCCTTCGTTTGGTTTTTCCC
TTTAGTGCTGTGACGCTAGCTACCTCGAACGATAGTGTCTGGAATTAGTGCCATTTCGATAAGACTTGGTTCTTATAGATTATTTTTTTACAGCTTGCGGGAGTCGTTGCTGTGGAAGTC
ACTGGTGGCCCCGAGATTCCATTCCATCCCGGGAGAGTGGTGAGTTTTGATATTCGATTTTCAATTGGTTTCTCGTGGAATGATGTAACAAAAGAATGCCTTGGATGGATACAGGACAAG
CCAACATGCCCAATGGAGGGACGGCTTCCAGATGCTACCAAGGGCGCGGATCATCTCAGAGACGTGTTTGTGAAGCATATGGGTCTCACGGACAAGGACATCGTGGCTCTTTCTGGCGGT
CACACTCTGGTAAGCTGTATCAGTCTCAGAGAAAAAAAAATCTTACGAAACTTCGGTGTGTTTGTCCAGGGAAGAGCACACAAGGAACGATCCGGGTTTGAGGGCCCATGGACGCACAAC
CCTCTCCAGTTTGACAACTCCTACTTCACGTAAGTCGATCGATTTCACTTTTCTTTCTTTCCGATCTAATCGTGTTTGCTCCAGGATACTGCTGAGCGGTGAGCAGGAAGGCATCCTCAC
TCTCCCAACCGACAAAGTTCTCGTGGAGGATCCCTCATTCCGCCCGCTCGTGGAGCTCTACGCCAAGGTAAAGAGAAATCTCCGCTTAGAACTCTGCGTGATCAAGAGATAAATCTCACT
TGGAACAGGACGAGGAGGCGTTCTTCAAGGACTACACCGAAGCCCACCTCAAGCTCTCGGAGCTTGGATTCGCCGAGGAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAAATCTTACCCGGCCGTGAGCGAGGAGTACAAGGCCGCCGTGGAGAAGGCCAAGAGGAAGCTCCGCGGCTTCATCGCAGAGAAGAACTGTGCGCCATTGATTCTCCGCCTTGCA
TGGCACTCGGCGGGAACTTACGATTGCCAGTCCAAGACCGGTGGTCCTTTTGGCACCATGAAGCTCGCTGAGGAGCTTGGCCATACCGCGAACAATGGTCTCGACATCGCCGTGAAGCTG
CTACAGCCAATCAAGGACCAGTTCCCCATCTTGAGCTATGGCGACTTCTATCAGCTTGCGGGAGTCGTTGCTGTGGAAGTCACTGGTGGCCCCGAGATTCCATTCCATCCCGGGAGAGTG
GACAAGCCAACATGCCCAATGGAGGGACGGCTTCCAGATGCTACCAAGGGCGCGGATCATCTCAGAGACGTGTTTGTGAAGCATATGGGTCTCACGGACAAGGACATCGTGGCTCTTTCT
GGCGGTCACACTCTGGGAAGAGCACACAAGGAACGATCCGGGTTTGAGGGCCCATGGACGCACAACCCTCTCCAGTTTGACAACTCCTACTTCACGATACTGCTGAGCGGTGAGCAGGAA
GGCATCCTCACTCTCCCAACCGACAAAGTTCTCGTGGAGGATCCCTCATTCCGCCCGCTCGTGGAGCTCTACGCCAAGGACGAGGAGGCGTTCTTCAAGGACTACACCGAAGCCCACCTC
AAGCTCTCGGAGCTTGGATTCGCCGAGGAGTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAAAT CTTACCCGGC CGTGAGCGAG GAGTACAAGG CCGCCGTGGA GAAGGCCAAG AGGAAGCTCC GCGGCTTCAT CGCAGAGAAG AACTGTGCGC CATTGATTCT CCGCCTTGCA  TGGCACTCGG CGGGAACTTA CGATTGCCAG TCCAAGACCG GTGGTCCTTT TGGCACCATG AAGCTCGCTG AGGAGCTTGG CCATACCGCG AACAATGGTC TCGACATCGC CGTGAAGCTG  CTACAGCCAA TCAAGGACCA GTTCCCCATC TTGAGCTATG GCGACTTCTA TCAGCTTGCG GGAGTCGTTG CTGTGGAAGT CACTGGTGGC CCCGAGATTC CATTCCATCC CGGGAGAGTG  GACAAGCCAA CATGCCCAAT GGAGGGACGG CTTCCAGATG CTACCAAGGG CGCGGATCAT CTCAGAGACG TGTTTGTGAA GCATATGGGT CTCACGGACA AGGACATCGT GGCTCTTTCT  GGCGGTCACA CTCTGGGAAG AGCACACAAG GAACGATCCG GGTTTGAGGG CCCATGGACG CACAACCCTC TCCAGTTTGA CAACTCCTAC TTCACGATAC TGCTGAGCGG TGAGCAGGAA  GGCATCCTCA CTCTCCCAAC CGACAAAGTT CTCGTGGAGG ATCCCTCATT CCGCCCGCTC GTGGAGCTCT ACGCCAAGGA CGAGGAGGCG TTCTTCAAGG ACTACACCGA AGCCCACCTC 
AAGCTCTCGG AGCTTGGATT CGCCGAGGAG TAA 

Retrieve as FASTA