1. Browse the Database
  2. View Redoxidase
Entry information : SmAPx03-1_65 (SmAPx03a_65)
Entry ID 7198
Creation 2010-02-10 (Christophe Dunand)
Last sequence changes 2010-02-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmAPx03-1_65 (SmAPx03a_65)
Name (synonym) SmAPx03-1_65 (SmAPx03a_65)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation Chloroplastic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx03-1_65
start..stop		 S start..stop
SmAPx03-2_72 714 0 1..348 1..348
AtrAPx03 479 4.69e-170 3..345 1..350
LeAPx07 475 1e-169 11..343 4..345
GmAPx08 474 6.63e-169 49..346 51..348
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7198' 'complement(join(248461..248490,248540..248644,248703..248780,248848..248922,248983..249069,249139..249206,249296..249383,249444..249544,249600..249720,249800..249955,250014..250151))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 250014..250151 136 N° 2 249800..249955 154 N° 3 249600..249720 119 N° 4 249444..249544 99
N° 5 249296..249383 86 N° 6 249139..249206 66 N° 7 248983..249069 85 N° 8 248848..248922 73
N° 9 248703..248780 76 N° 10 248540..248644 103 N° 11 248461..248490 28  
complement(join(248461..248490,248540..248644,248703..248780,248848..248922,2489 83..249069,249139..249206,249296..249383,249444..249544,249600..249720,249800..2 49955,250014..250151))


exon

Literature and cross-references SmAPx03-1_65 (SmAPx03a_65)
DNA ref. Phytozome 12:   scaffold_65 (250151..248461)
mRNA ref. JGI transcript:   156990
Cluster/Prediction ref. UniGene:   Smo.7135
Protein sequence: SmAPx03-1_65 (SmAPx03a_65)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   348 (323)
PWM (Da):   %s   37778.34 (35215.0)  
PI (pH):   %s   8.92 (8.60) Peptide Signal:   %s   cut: 26 range:26-348
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAMASARSIVFSGALLCKSLPAVTARLSIAAAPHRRLSSSGLSLRAACSRRIRTFAMSGSGAAAVESSQRIASQLDQLVGAREAIKEVITKMHCNPIVIRLGWHDAGTYDKNISEWPKCG
GANGSLRFPIELEHGANAGLINALKLLNPVKEKFTAVSYADLFQLASATAIEMAGGPRIPMRYGRVDTVGPEQCPKEGNLPSAGPPNPSEHLRKVFHRMGLDDKDIVALSGAHTLGRSRP
ERSGWGKKETKYTKDGPGAPGGQSWTVEWLKFDNSYFKDIKEKRDEDLLVLPTDAVLFEDPGFKEHAELYAKDQDAFFKDYAQAHAKLSELGAKFDPPQGIRIDESTS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns) and 15 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATGGCGTCGGCGAGGTCGATCGTTTTCTCCGGGGCGCTTCTCTGCAAATCTCTTCCTGCTGTCACTGCGAGGCTCAGCATTGCTGCGGCGCCTCATCGGCGGCTCTCATCATCG
GGTTTGTCGCTCCGTGCGGTGAGTGTTTGCCTCCTCTCTTTCTCGATGTCGATGGATCGTGTTTGCAACCGATCAGGCGCCTGCTCGCGGAGGATCAGAACTTTTGCCATGTCTGGGAGT
GGAGCCGCCGCCGTGGAATCGTCCCAGAGGATCGCGTCTCAGCTCGATCAGCTAGTGGGAGCGAGGGAAGCGATCAAGGAAGTGATCACGAAAATGCATTGCAATCCTATAGTAGTAAGT
GTCAAAAAAAACACTCGCACTGTTTTCTTTATTTTTCAACGATCAAACCTTGTGAGCTCTTTCAAATCGACAGATATTAGATTGGGATGGCACGACGCTGGAACGTATGACAAGAACATC
AGCGAGTGGCCCAAGTGTGGTGGTGCCAATGGAAGCCTGCGCTTCCCTATCGAGTTGGAACATGGAGCGAATGCTGGTAACTTTTAGGAACTTGCGAAAAGCTTGGAACGATCCCTTCGA
ACTTACGGCAGGAGACTCATAAATGCTCTCAAGCTGCTTAATCCCGTGAAGGAGAAATTCACCGCAGTAAGCTATGCCGATCTTTTCCAGCTTGCAAGCGCCACCGCCATAGAGGTAAAC
TTATCAAGAAAGAACAAAGAAGCCGGCCTAAACTTCTAAAGGTGATGGAATCAGATATGGCTGGAGGACCCCGGATTCCAATGCGATATGGAAGAGTTGATACCGTAGGCCCAGAGCAAT
GCCCGAAGGAGGGTAACCTTCCAAGTAAGAATGAGTTTTCCAAGCGCTAGCCAACTTGGACTTCGACAAATGATGTCCGTTTCTTTGACGCCTGGAATTAATTTTCTTTCCAGGTGTGCC
GGACCCCCAAATCCTTCCGAGCACCTTCGCAAAGTGTTTCACAGGATGGGACTGGATGACAAGGTGCGCTTTCCGCTTTGAAGAATTTTCCTGGCTTGAGCAGACTTTTACTCATCGCCT
TGATATACCAAGGAGACATTGTTGCCCTGTCAGGTGCTCATACCTTGGGACGATCTAGACCAGAACGGAGTGGCTGGGGAAAAAAGGAAACGAAATACACGGTAACGAAAGTGGTTCTTT
CAGAAGCTTCGATGACATTTTGATGCTTGAGACCATGATAGAAAAAGACGGACCTGGAGCTCCAGGAGGCCAGTCCTGGACTGTGGAATGGCTGAAATTTGACAATTCATATTTCAAGGT
AGACTTTATTCCAAGGACGAAAAAAAAATTTGGATAGTAGTGAACGCCGGTTGTATCGTATGCAGGAGATATCAAGGAGAAAAGAGACGAAGATCTTCTCGTCTTGCCAACTGACGCAGT
CCTTTTCGAAGATCCAGGATTCAAGGTAAAGAATAGACCAACTTAAGAAAATTAGAAAAACTTATCTCAATGTATATCTCCAGGAGAGCATGCCGAGCTCTACGCCAAGGATCAGGACGC
GTTCTTCAAGGACTATGCTCAAGCGCATGCCAAGCTGAGTGAACTGGGAGCCAAATTCGATCCACCTCAAGTTTGTAGCTCTTGTTCTCCTCCTTGTTGGCTGACTGATGTGGTTGCAGG
GGGAATCCGGATCGACGAGAGCACAAGTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATGGCGTCGGCGAGGTCGATCGTTTTCTCCGGGGCGCTTCTCTGCAAATCTCTTCCTGCTGTCACTGCGAGGCTCAGCATTGCTGCGGCGCCTCATCGGCGGCTCTCATCATCG
GGTTTGTCGCTCCGTGCGGCCTGCTCGCGGAGGATCAGAACTTTTGCCATGTCTGGGAGTGGAGCCGCCGCCGTGGAATCGTCCCAGAGGATCGCGTCTCAGCTCGATCAGCTAGTGGGA
GCGAGGGAAGCGATCAAGGAAGTGATCACGAAAATGCATTGCAATCCTATAGTAATTAGATTGGGATGGCACGACGCTGGAACGTATGACAAGAACATCAGCGAGTGGCCCAAGTGTGGT
GGTGCCAATGGAAGCCTGCGCTTCCCTATCGAGTTGGAACATGGAGCGAATGCTGGACTCATAAATGCTCTCAAGCTGCTTAATCCCGTGAAGGAGAAATTCACCGCAGTAAGCTATGCC
GATCTTTTCCAGCTTGCAAGCGCCACCGCCATAGAGATGGCTGGAGGACCCCGGATTCCAATGCGATATGGAAGAGTTGATACCGTAGGCCCAGAGCAATGCCCGAAGGAGGGTAACCTT
CCAAGTGCCGGACCCCCAAATCCTTCCGAGCACCTTCGCAAAGTGTTTCACAGGATGGGACTGGATGACAAGGACATTGTTGCCCTGTCAGGTGCTCATACCTTGGGACGATCTAGACCA
GAACGGAGTGGCTGGGGAAAAAAGGAAACGAAATACACGAAAGACGGACCTGGAGCTCCAGGAGGCCAGTCCTGGACTGTGGAATGGCTGAAATTTGACAATTCATATTTCAAGGATATC
AAGGAGAAAAGAGACGAAGATCTTCTCGTCTTGCCAACTGACGCAGTCCTTTTCGAAGATCCAGGATTCAAGGAGCATGCCGAGCTCTACGCCAAGGATCAGGACGCGTTCTTCAAGGAC
TATGCTCAAGCGCATGCCAAGCTGAGTGAACTGGGAGCCAAATTCGATCCACCTCAAGGAATCCGGATCGACGAGAGCACAAGTTAG

Retrieve as FASTA