Entry information : SmAPx04-1_7 (SmAPx04a_7)
Entry ID 7200
Creation 2010-02-10 (Christophe Dunand)
Last sequence changes 2010-02-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmAPx04-1_7 (SmAPx04a_7)
Name (synonym) SmAPx04-1_7 (SmAPx04a_7)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx04-1_7
start..stop
S start..stop
SmAPx04-2_36 830 0 1..407 1..407
EglAPx08 543 0 39..403 72..443
EguAPx08 542 0 39..403 72..443
CclAPx02 541 0 54..405 38..394
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7200' 'complement(join(2423527..2423682,2423734..2423793,2423840..2423944,2424015..2424092,2424151..2424225,2424279..2424365,2424414..2424481,2424538..2424625,2424670..2424770,2424824..2424944,2424997..2425152,2425201..2425329))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2425201..2425329 127 N° 2 2424997..2425152 154 N° 3 2424824..2424944 119 N° 4 2424670..2424770 99
N° 5 2424538..2424625 86 N° 6 2424414..2424481 66 N° 7 2424279..2424365 85 N° 8 2424151..2424225 73
N° 9 2424015..2424092 76 N° 10 2423840..2423944 103 N° 11 2423734..2423793 58 N° 12 2423527..2423682 154
complement(join(2423527..2423682,2423734..2423793,2423840..2423944,2424015..2424 092,2424151..2424225,2424279..2424365,2424414..2424481,2424538..2424625,2424670. .2424770,2424824..2424944,2424997..2425152,2425201..2425329))


exon

Literature and cross-references SmAPx04-1_7 (SmAPx04a_7)
DNA ref. Phytozome 12:   scaffold_7 (2425329..2423527)
mRNA ref. JGI transcript:   85469 [Incorrect prediction]
EST ref. GenBank:   FE507096.1 [5' end]  FE507095.1 [3' end]
Cluster/Prediction ref. UniGene:   Smo.1505
Protein sequence: SmAPx04-1_7 (SmAPx04a_7)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   407
PWM (Da):   %s   44572.14 Transmb domain:   %s   o384-406i
PI (pH):   %s   9.23
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALSLADARVPAWDVRAGVAPSKKNAAVKREFKSNFFQSSAVAKVATIAPRKLRRRALVISNSSSTSVKLSANDLEEAKLAVKELVQNTYSNPILIRLGWHDAGTYNKDIKEWPKCGGAN
GSVRFTKEMGHAANA
GLQGALKLLDPIKDKFPAISYADLFQLASVTAILAGGPKIPMRYGRVDTTTPEECPEEGMLPDAGAPSPAEHLRKVFYRMGFNDEIVALSGAHTLGRARPNRSGW
GKDETKYT
KDGPGLPGGQSWTVHWLKFDNSYFREVKEKRDAELLVLPTDAALFEDPSFKVYAEKYAEDQETFFKDYAEAHAKLSELGAKFDPPEGITLEAAPQKFVAAEYSTPKKELSDS
MKQKIRAEYLGLGGSPDQPLKTNYFLNIIVIIAVLAILTWLFGGF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns) and ESTs. ESTs from the two are compiled in the same unigene. Incorrect prediction from JGI (first exon is incorrectly predicted)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCTATCTTTAGCTGACGCTAGAGTTCCAGCTTGGGATGTGCGAGCCGGAGTCGCGCCCAGCAAGAAGAATGCGGCTGTCAAGCGAGAATTTAAGTCGAATTTCTTTCAGTCATCT
GCTGTGGCG
GTAAGATTTTTCTTCGTTTCTTCTGCCTCTCAGTGTAGAGTGGTGCAGAAAAAGTAGCAACGATTGCTCCAAGAAAACTTCGGCGGAGAGCACTAGTGATCAGTAACAGTT
CTTCGACGTCCGTCAAGCTATCAGCGAATGATCTCGAAGAAGCCAAATTGGCGGTGAAGGAGCTCGTCCAGAATACGTATAGTAATCCAATCCTG
GTAAAGTTTCTTCGAGAAATTTCAT
TGTCACCTTCTTTGGTTTCGTTTGTAGATATTCGCTTGGGGTGGCATGACGCAGGAACTTATAACAAAGATATCAAAGAGTGGCCAAAATGCGGTGGCGCAAATGGGAGTGTACGATTTA
CGAAGGAGATGGGTCACGCTGCCAATGCCG
GTACTGCCTTGTTCATTTCAACTTACTTTTGAACTGGGTGAATGTATTGTCAGGCGCCTCCAAGGCGCACTGAAACTTCTGGATCCTATC
AAAGATAAATTCCCTGCGATAAGCTATGCAGATTTGTTCCAACTTGCGAGCGTCACTGCGATAGAG
GTAACCCCCGTTTATGAAACATGCTGTTATTCAAGTTATTGCAGCTCTAGCGGG
AGGTCCTAAAATACCGATGCGATACGGAAGAGTGGATACGACTACTCCAGAAGAATGTCCGGAAGAAGGAATGCTTCCTG
GTTCGTAAAATTCTTTCTAACAACTGTGCGTTTTTACATT
TGATCTTTTTCTTTAGATATGCTGGAGCTCCAAGTCCTGCCGAACATCTTCGGAAGGTATTTTACAGAATGGGGTTTAACGACAAGGTACATAGATCATAGATAGAGAACTTTAGTTGTT
TACATGTTGAACAGGAGAAATTGTTGCTTTATCGGGTGCTCACACACTCGGCAGGGCTCGGCCGAATAGAAGTGGATGGGGCAAAGATGAAACCAAATATACAGTAATGTAGCATCTACG
ACGTGTTCTTACTAAACAGTGAATCATTTTATGCAGAAAAAGATGGTCCAGGACTACCTGGCGGGCAGTCATGGACCGTACATTGGCTGAAGTTTGACAACTCCTATTTCAGGGTATGCC
TTTACCTTGGTTTTTAATACTCTGATCACAATAATCCTCTCGGAGGTGTAGGAGAAGTAAAAGAGAAACGAGATGCAGAATTACTTGTACTGCCAACGGATGCGGCTCTCTTTGAGGATC
CCAGCTTTAAG
GTGCGGAATGTGCTTCGCAGTTCAGTTTCTACTTCATGAAAACGGTCTGAGTTTATAAAGTTGGACGCAGGTGTGTATGCTGAAAAGTATGCAGAGGATCAAGAAACTT
TCTTCAAAGACTACGCAGAAGCTCATGCCAAGCTTAGTGAGCTAGGTGCTAAATTCGATCCACCCGAG
GTAAATGATCTAGGTTTTGAAAGACATTACAATACTCTCACTGCAGGGGGCA
TTACGCTTGAGGCTGCTCCTCAAAAGTTCGTTGCTGCCGAATACTCAACTCCGAAG
GTGCCTTTTCTTACTTGGCTGTATGCACTGACCATCATCTGTTGTTTGCAGAAAAAGAGCTCTC
TGATTCCATGAAGCAGAAAATCCGTGCTGAATACCTTGGGCTTGGTGGAAGTCCAGACCAGCCTTTGAAGACGAACTACTTTCTGAACATTATAGTCATCATTGCGGTTCTTGCTATTCT
GACGTGGCTATTCGGTGGGTTTTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCTATCTTTAGCTGACGCTAGAGTTCCAGCTTGGGATGTGCGAGCCGGAGTCGCGCCCAGCAAGAAGAATGCGGCTGTCAAGCGAGAATTTAAGTCGAATTTCTTTCAGTCATCT
GCTGTGGCG
AAAGTAGCAACGATTGCTCCAAGAAAACTTCGGCGGAGAGCACTAGTGATCAGTAACAGTTCTTCGACGTCCGTCAAGCTATCAGCGAATGATCTCGAAGAAGCCAAATTG
GCGGTGAAGGAGCTCGTCCAGAATACGTATAGTAATCCAATCCTG
ATTCGCTTGGGGTGGCATGACGCAGGAACTTATAACAAAGATATCAAAGAGTGGCCAAAATGCGGTGGCGCAAAT
GGGAGTGTACGATTTACGAAGGAGATGGGTCACGCTGCCAATGCCG
GCCTCCAAGGCGCACTGAAACTTCTGGATCCTATCAAAGATAAATTCCCTGCGATAAGCTATGCAGATTTGTTC
CAACTTGCGAGCGTCACTGCGATAGAG
CTAGCGGGAGGTCCTAAAATACCGATGCGATACGGAAGAGTGGATACGACTACTCCAGAAGAATGTCCGGAAGAAGGAATGCTTCCTGATGCT
GGAGCTCCAAGTCCTGCCGAACATCTTCGGAAGGTATTTTACAGAATGGGGTTTAACGACAAG
GAAATTGTTGCTTTATCGGGTGCTCACACACTCGGCAGGGCTCGGCCGAATAGAAGT
GGATGGGGCAAAGATGAAACCAAATATACA
AAAGATGGTCCAGGACTACCTGGCGGGCAGTCATGGACCGTACATTGGCTGAAGTTTGACAACTCCTATTTCAGGGAAGTAAAAGAGAAA
CGAGATGCAGAATTACTTGTACTGCCAACGGATGCGGCTCTCTTTGAGGATCCCAGCTTTAAG
GTGTATGCTGAAAAGTATGCAGAGGATCAAGAAACTTTCTTCAAAGACTACGCAGAA
GCTCATGCCAAGCTTAGTGAGCTAGGTGCTAAATTCGATCCACCCGAG
GGCATTACGCTTGAGGCTGCTCCTCAAAAGTTCGTTGCTGCCGAATACTCAACTCCGAAGAAAGAGCTCTCT
GATTCCATGAAGCAGAAAATCCGTGCTGAATACCTTGGGCTTGGTGGAAGTCCAGACCAGCCTTTGAAGACGAACTACTTTCTGAACATTATAGTCATCATTGCGGTTCTTGCTATTCTG
ACGTGGCTATTCGGTGGGTTTTAG

Retrieve as FASTA