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Entry information : SmAPx04-1_7 (SmAPx04a_7)
Entry ID 7200
Creation 2010-02-10 (Christophe Dunand)
Last sequence changes 2010-02-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmAPx04-1_7 (SmAPx04a_7)
Name (synonym) SmAPx04-1_7 (SmAPx04a_7)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx04-1_7
start..stop		 S start..stop
SmAPx04-2_36 830 0 1..407 1..407
EglAPx08 543 0 39..403 72..443
EguAPx08 542 0 39..403 72..443
CclAPx02 541 0 54..405 38..394
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2425201..2425329 127 N° 2 2424997..2425152 154 N° 3 2424824..2424944 119 N° 4 2424670..2424770 99
N° 5 2424538..2424625 86 N° 6 2424414..2424481 66 N° 7 2424279..2424365 85 N° 8 2424151..2424225 73
N° 9 2424015..2424092 76 N° 10 2423840..2423944 103 N° 11 2423734..2423793 58 N° 12 2423527..2423682 154
complement(join(2423527..2423682,2423734..2423793,2423840..2423944,2424015..2424 092,2424151..2424225,2424279..2424365,2424414..2424481,2424538..2424625,2424670. .2424770,2424824..2424944,2424997..2425152,2425201..2425329))


exon

Literature and cross-references SmAPx04-1_7 (SmAPx04a_7)
DNA ref. Phytozome 12:   scaffold_7 (2425329..2423527)
mRNA ref. JGI transcript:   85469 [Incorrect prediction]
EST ref. GenBank:   FE507096.1 [5' end]  FE507095.1 [3' end]
Cluster/Prediction ref. UniGene:   Smo.1505
Protein sequence: SmAPx04-1_7 (SmAPx04a_7)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   407
PWM (Da):   %s   44572.14 Transmb domain:   %s   o384-406i
PI (pH):   %s   9.23
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALSLADARVPAWDVRAGVAPSKKNAAVKREFKSNFFQSSAVAKVATIAPRKLRRRALVISNSSSTSVKLSANDLEEAKLAVKELVQNTYSNPILIRLGWHDAGTYNKDIKEWPKCGGAN
GSVRFTKEMGHAANAGLQGALKLLDPIKDKFPAISYADLFQLASVTAILAGGPKIPMRYGRVDTTTPEECPEEGMLPDAGAPSPAEHLRKVFYRMGFNDEIVALSGAHTLGRARPNRSGW
GKDETKYTKDGPGLPGGQSWTVHWLKFDNSYFREVKEKRDAELLVLPTDAALFEDPSFKVYAEKYAEDQETFFKDYAEAHAKLSELGAKFDPPEGITLEAAPQKFVAAEYSTPKKELSDS
MKQKIRAEYLGLGGSPDQPLKTNYFLNIIVIIAVLAILTWLFGGF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns) and ESTs. ESTs from the two are compiled in the same unigene. Incorrect prediction from JGI (first exon is incorrectly predicted)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCTATCTTTAGCTGACGCTAGAGTTCCAGCTTGGGATGTGCGAGCCGGAGTCGCGCCCAGCAAGAAGAATGCGGCTGTCAAGCGAGAATTTAAGTCGAATTTCTTTCAGTCATCT
GCTGTGGCGGTAAGATTTTTCTTCGTTTCTTCTGCCTCTCAGTGTAGAGTGGTGCAGAAAAAGTAGCAACGATTGCTCCAAGAAAACTTCGGCGGAGAGCACTAGTGATCAGTAACAGTT
CTTCGACGTCCGTCAAGCTATCAGCGAATGATCTCGAAGAAGCCAAATTGGCGGTGAAGGAGCTCGTCCAGAATACGTATAGTAATCCAATCCTGGTAAAGTTTCTTCGAGAAATTTCAT
TGTCACCTTCTTTGGTTTCGTTTGTAGATATTCGCTTGGGGTGGCATGACGCAGGAACTTATAACAAAGATATCAAAGAGTGGCCAAAATGCGGTGGCGCAAATGGGAGTGTACGATTTA
CGAAGGAGATGGGTCACGCTGCCAATGCCGGTACTGCCTTGTTCATTTCAACTTACTTTTGAACTGGGTGAATGTATTGTCAGGCGCCTCCAAGGCGCACTGAAACTTCTGGATCCTATC
AAAGATAAATTCCCTGCGATAAGCTATGCAGATTTGTTCCAACTTGCGAGCGTCACTGCGATAGAGGTAACCCCCGTTTATGAAACATGCTGTTATTCAAGTTATTGCAGCTCTAGCGGG
AGGTCCTAAAATACCGATGCGATACGGAAGAGTGGATACGACTACTCCAGAAGAATGTCCGGAAGAAGGAATGCTTCCTGGTTCGTAAAATTCTTTCTAACAACTGTGCGTTTTTACATT
TGATCTTTTTCTTTAGATATGCTGGAGCTCCAAGTCCTGCCGAACATCTTCGGAAGGTATTTTACAGAATGGGGTTTAACGACAAGGTACATAGATCATAGATAGAGAACTTTAGTTGTT
TACATGTTGAACAGGAGAAATTGTTGCTTTATCGGGTGCTCACACACTCGGCAGGGCTCGGCCGAATAGAAGTGGATGGGGCAAAGATGAAACCAAATATACAGTAATGTAGCATCTACG
ACGTGTTCTTACTAAACAGTGAATCATTTTATGCAGAAAAAGATGGTCCAGGACTACCTGGCGGGCAGTCATGGACCGTACATTGGCTGAAGTTTGACAACTCCTATTTCAGGGTATGCC
TTTACCTTGGTTTTTAATACTCTGATCACAATAATCCTCTCGGAGGTGTAGGAGAAGTAAAAGAGAAACGAGATGCAGAATTACTTGTACTGCCAACGGATGCGGCTCTCTTTGAGGATC
CCAGCTTTAAGGTGCGGAATGTGCTTCGCAGTTCAGTTTCTACTTCATGAAAACGGTCTGAGTTTATAAAGTTGGACGCAGGTGTGTATGCTGAAAAGTATGCAGAGGATCAAGAAACTT
TCTTCAAAGACTACGCAGAAGCTCATGCCAAGCTTAGTGAGCTAGGTGCTAAATTCGATCCACCCGAGGTAAATGATCTAGGTTTTGAAAGACATTACAATACTCTCACTGCAGGGGGCA
TTACGCTTGAGGCTGCTCCTCAAAAGTTCGTTGCTGCCGAATACTCAACTCCGAAGGTGCCTTTTCTTACTTGGCTGTATGCACTGACCATCATCTGTTGTTTGCAGAAAAAGAGCTCTC
TGATTCCATGAAGCAGAAAATCCGTGCTGAATACCTTGGGCTTGGTGGAAGTCCAGACCAGCCTTTGAAGACGAACTACTTTCTGAACATTATAGTCATCATTGCGGTTCTTGCTATTCT
GACGTGGCTATTCGGTGGGTTTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCTATCTTTAGCTGACGCTAGAGTTCCAGCTTGGGATGTGCGAGCCGGAGTCGCGCCCAGCAAGAAGAATGCGGCTGTCAAGCGAGAATTTAAGTCGAATTTCTTTCAGTCATCT
GCTGTGGCGAAAGTAGCAACGATTGCTCCAAGAAAACTTCGGCGGAGAGCACTAGTGATCAGTAACAGTTCTTCGACGTCCGTCAAGCTATCAGCGAATGATCTCGAAGAAGCCAAATTG
GCGGTGAAGGAGCTCGTCCAGAATACGTATAGTAATCCAATCCTGATTCGCTTGGGGTGGCATGACGCAGGAACTTATAACAAAGATATCAAAGAGTGGCCAAAATGCGGTGGCGCAAAT
GGGAGTGTACGATTTACGAAGGAGATGGGTCACGCTGCCAATGCCGGCCTCCAAGGCGCACTGAAACTTCTGGATCCTATCAAAGATAAATTCCCTGCGATAAGCTATGCAGATTTGTTC
CAACTTGCGAGCGTCACTGCGATAGAGCTAGCGGGAGGTCCTAAAATACCGATGCGATACGGAAGAGTGGATACGACTACTCCAGAAGAATGTCCGGAAGAAGGAATGCTTCCTGATGCT
GGAGCTCCAAGTCCTGCCGAACATCTTCGGAAGGTATTTTACAGAATGGGGTTTAACGACAAGGAAATTGTTGCTTTATCGGGTGCTCACACACTCGGCAGGGCTCGGCCGAATAGAAGT
GGATGGGGCAAAGATGAAACCAAATATACAAAAGATGGTCCAGGACTACCTGGCGGGCAGTCATGGACCGTACATTGGCTGAAGTTTGACAACTCCTATTTCAGGGAAGTAAAAGAGAAA
CGAGATGCAGAATTACTTGTACTGCCAACGGATGCGGCTCTCTTTGAGGATCCCAGCTTTAAGGTGTATGCTGAAAAGTATGCAGAGGATCAAGAAACTTTCTTCAAAGACTACGCAGAA
GCTCATGCCAAGCTTAGTGAGCTAGGTGCTAAATTCGATCCACCCGAGGGCATTACGCTTGAGGCTGCTCCTCAAAAGTTCGTTGCTGCCGAATACTCAACTCCGAAGAAAGAGCTCTCT
GATTCCATGAAGCAGAAAATCCGTGCTGAATACCTTGGGCTTGGTGGAAGTCCAGACCAGCCTTTGAAGACGAACTACTTTCTGAACATTATAGTCATCATTGCGGTTCTTGCTATTCTG
ACGTGGCTATTCGGTGGGTTTTAG

Retrieve as FASTA