The peroxidases and oxidases database
Entry information : PnaKat01
Entry ID 7269
Creation 2010-02-25 (Marcel Zamocky)
Last sequence changes 2015-11-03 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-03 (Achraf Jemmat)
Peroxidase information: PnaKat01
Name PnaKat01
Class Catalase    [Orthogroup: Kat001]
Taxonomy Bacteria Proteobacteria Betaproteobacteria Comamonadaceae Polaromonas
Organism Polaromonas naphthalenivorans    [TaxId: 216465 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PnaKat01
start..stop		 S start..stop
POsKat01 1176 0 13..729 6..724
VpaKat01 979 0 3..729 1..728
BphyKat01 794 0 6..729 8..710
PEspKat01 789 0 18..729 22..739
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2117340..2119529 2190  
join(2117340..2119529)


exon

Literature and cross-references PnaKat01
Literature Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P.(2006) Complete sequence of chromosome 1 of Polaromonas naphthalenivorans CJ2. Submitted to the EMBL/GenBank/DDBJ databases.
Protein ref. UniProtKB:   A1VNS4
DNA ref. GenBank:   CP000529.1 (2117340..2119529)
Protein sequence: PnaKat01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   729
PWM (Da):   %s   79973.78  
PI (pH):   %s   7.18
Sequence 0
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Send to Peroxiscan
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MSLHPKRNGA SSRSSAAPPA KNNQDKKTQL EACTVAASPS LTSNQGVPIT DNHNSLKAGD NGPTLLEDFI LREKITHFGH ERIPERVVNA RGCGAHGYFK PYKSMVQYTS AAFLQTPDLE  TPVFVRFSGS SGSQGSADTV RDVRGFAVKF YTQKGNYDLV GNNMPVFYIQ DAIKFPDLIH ALKPEPNHEM PQASSAHDTF WDFASLVPEV THMLMWTMSD RGLPRSLRMM EGFGVHAFRF  INARGDAFFV KFHWKPKLGV HALDWDEAQK IAGKDPDFLR RDLWEAIEAG NCPEWELGVQ IVDAGREGDL EFDILDPTKL IPESQVPVQI IGKMVLNRNA ENFFSETEQV AFHPGNLVPG  IDFSNDPLLQ GRLFSYTDAQ LTRLGGPNFN EIPINRSICP IHNFQRGGLH RQTINKGRVA YEPNTLGTGT EFRIDGAAQD VQPPFKPMDA SKTRHRRASF DDHFSQATLF WNSQSLAEKD  HLVAAFRFEL SKVELPEIRQ RMVDNLAHVD LKLAARVAAS LGINAPDPKA AAGRLGFRDH KTTSKVSEEP ALSMAARPGA SIKTRKIAVL VADGVDAPPL RRLLQDMAAT GAVCKLVASR  LGSVSTLGGK QLVVDHTFAN MPSVMFDAVL IPGGNESITS LCTLGEAVHF VLEAYKHGKT ICALNEGSQL LATLGFSNEK NPELINVPTP GILLADARKV LDGQVTQDFI AAIALHRHWD 
RLNAEAVPA 

Retrieve as FASTA  
Remarks strain="CJ2"
DNA ►
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ATGTCGTTGC ATCCAAAGCG CAACGGGGCC AGTTCGCGCA GCAGTGCCGC CCCTCCAGCA AAAAACAATC AGGACAAAAA AACCCAGCTA GAAGCTTGTA CCGTTGCAGC CAGCCCCAGC  CTGACCAGCA ACCAGGGTGT GCCGATTACA GACAACCACA ACTCACTGAA GGCAGGAGAT AACGGCCCCA CCCTGCTGGA AGACTTTATT CTGCGTGAAA AAATTACCCA TTTTGGCCAT  GAACGCATTC CAGAACGCGT TGTCAATGCC CGGGGCTGTG GTGCGCACGG TTATTTCAAG CCTTATAAAT CAATGGTTCA GTACACCAGT GCAGCTTTTT TGCAGACTCC CGACCTCGAA  ACTCCTGTTT TTGTGCGATT CTCTGGCTCT TCCGGCTCTC AGGGCTCGGC CGATACCGTG CGAGATGTGC GGGGGTTTGC GGTGAAGTTT TACACGCAAA AGGGCAACTA TGACCTGGTG  GGAAACAACA TGCCTGTTTT CTATATTCAG GATGCCATCA AATTTCCGGA CCTGATCCAT GCGCTCAAGC CAGAGCCGAA TCATGAGATG CCGCAAGCCA GCAGCGCGCA CGACACATTC  TGGGATTTTG CGTCATTGGT TCCCGAAGTG ACCCATATGC TCATGTGGAC CATGTCCGAC CGCGGCCTGC CGCGCAGCCT TCGGATGATG GAAGGGTTTG GCGTTCATGC GTTTCGCTTC  ATCAATGCAC GGGGTGATGC CTTTTTTGTC AAATTTCACT GGAAACCCAA GTTGGGTGTA CACGCCCTTG ACTGGGATGA AGCCCAAAAG ATTGCCGGCA AAGACCCCGA CTTCCTTCGT  CGTGATTTGT GGGAAGCGAT TGAAGCGGGT AACTGTCCAG AATGGGAACT GGGGGTGCAG ATTGTTGATG CCGGCAGGGA GGGAGATTTG GAGTTTGACA TTTTGGATCC GACAAAACTC  ATCCCCGAGT CCCAGGTGCC TGTGCAAATC ATCGGAAAAA TGGTCTTGAA TCGGAACGCA GAGAACTTTT TCTCGGAAAC CGAACAGGTC GCGTTTCATC CAGGAAACCT GGTGCCAGGC  ATTGATTTTT CAAACGATCC GCTGTTGCAG GGCCGTCTTT TCTCCTATAC CGATGCCCAG TTGACTCGCC TGGGCGGTCC AAATTTCAAT GAGATCCCCA TCAATCGCAG CATCTGCCCG  ATTCACAACT TCCAGCGTGG CGGCTTGCAC CGACAGACCA TCAACAAGGG ACGAGTTGCC TATGAACCCA ATACGCTGGG CACCGGCACC GAGTTCCGGA TCGACGGTGC AGCGCAAGAC  GTCCAGCCGC CTTTCAAACC GATGGATGCG TCCAAAACAC GGCATCGCAG GGCTTCATTC GATGACCATT TTTCCCAGGC CACCTTGTTC TGGAACAGCC AGAGCCTGGC TGAAAAAGAC  CATCTCGTTG CCGCGTTCAG GTTTGAACTG TCCAAGGTCG AACTGCCCGA GATTCGCCAG CGCATGGTTG ATAACCTGGC GCACGTTGAC CTCAAACTGG CGGCGCGGGT AGCGGCATCG  CTGGGAATCA ATGCGCCCGA CCCTAAAGCG GCGGCGGGCC GGCTGGGTTT TCGCGATCAC AAAACGACCA GCAAGGTCAG CGAAGAGCCA GCGTTAAGCA TGGCAGCACG GCCTGGCGCG  AGCATCAAGA CCCGCAAGAT CGCCGTTTTG GTGGCAGATG GGGTCGATGC CCCTCCCCTG CGGCGACTGC TTCAGGATAT GGCAGCGACG GGCGCCGTCT GCAAACTCGT TGCCTCGCGA  CTTGGAAGCG TCAGCACGCT CGGTGGCAAA CAGCTTGTGG TTGACCACAC CTTTGCAAAC ATGCCTTCGG TCATGTTTGA TGCGGTATTG ATTCCTGGTG GAAATGAGAG CATCACAAGC  TTATGTACTT TGGGTGAGGC TGTGCATTTT GTACTTGAAG CCTATAAGCA CGGCAAGACC ATCTGCGCAT TGAACGAAGG CAGCCAGTTG CTCGCCACCC TGGGGTTCAG CAATGAAAAA  AATCCAGAAC TGATCAATGT GCCTACGCCG GGGATTTTAT TGGCCGATGC CCGCAAAGTA CTTGATGGAC AGGTGACGCA GGATTTCATT GCGGCCATTG CCCTTCATCG GCATTGGGAC 
CGGTTGAATG CCGAGGCGGT TCCAGCCTGA 

Retrieve as FASTA  
CDS►
Send to BLAST
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ATGTCGTTGC ATCCAAAGCG CAACGGGGCC AGTTCGCGCA GCAGTGCCGC CCCTCCAGCA AAAAACAATC AGGACAAAAA AACCCAGCTA GAAGCTTGTA CCGTTGCAGC CAGCCCCAGC  CTGACCAGCA ACCAGGGTGT GCCGATTACA GACAACCACA ACTCACTGAA GGCAGGAGAT AACGGCCCCA CCCTGCTGGA AGACTTTATT CTGCGTGAAA AAATTACCCA TTTTGGCCAT  GAACGCATTC CAGAACGCGT TGTCAATGCC CGGGGCTGTG GTGCGCACGG TTATTTCAAG CCTTATAAAT CAATGGTTCA GTACACCAGT GCAGCTTTTT TGCAGACTCC CGACCTCGAA  ACTCCTGTTT TTGTGCGATT CTCTGGCTCT TCCGGCTCTC AGGGCTCGGC CGATACCGTG CGAGATGTGC GGGGGTTTGC GGTGAAGTTT TACACGCAAA AGGGCAACTA TGACCTGGTG  GGAAACAACA TGCCTGTTTT CTATATTCAG GATGCCATCA AATTTCCGGA CCTGATCCAT GCGCTCAAGC CAGAGCCGAA TCATGAGATG CCGCAAGCCA GCAGCGCGCA CGACACATTC  TGGGATTTTG CGTCATTGGT TCCCGAAGTG ACCCATATGC TCATGTGGAC CATGTCCGAC CGCGGCCTGC CGCGCAGCCT TCGGATGATG GAAGGGTTTG GCGTTCATGC GTTTCGCTTC  ATCAATGCAC GGGGTGATGC CTTTTTTGTC AAATTTCACT GGAAACCCAA GTTGGGTGTA CACGCCCTTG ACTGGGATGA AGCCCAAAAG ATTGCCGGCA AAGACCCCGA CTTCCTTCGT  CGTGATTTGT GGGAAGCGAT TGAAGCGGGT AACTGTCCAG AATGGGAACT GGGGGTGCAG ATTGTTGATG CCGGCAGGGA GGGAGATTTG GAGTTTGACA TTTTGGATCC GACAAAACTC  ATCCCCGAGT CCCAGGTGCC TGTGCAAATC ATCGGAAAAA TGGTCTTGAA TCGGAACGCA GAGAACTTTT TCTCGGAAAC CGAACAGGTC GCGTTTCATC CAGGAAACCT GGTGCCAGGC  ATTGATTTTT CAAACGATCC GCTGTTGCAG GGCCGTCTTT TCTCCTATAC CGATGCCCAG TTGACTCGCC TGGGCGGTCC AAATTTCAAT GAGATCCCCA TCAATCGCAG CATCTGCCCG  ATTCACAACT TCCAGCGTGG CGGCTTGCAC CGACAGACCA TCAACAAGGG ACGAGTTGCC TATGAACCCA ATACGCTGGG CACCGGCACC GAGTTCCGGA TCGACGGTGC AGCGCAAGAC  GTCCAGCCGC CTTTCAAACC GATGGATGCG TCCAAAACAC GGCATCGCAG GGCTTCATTC GATGACCATT TTTCCCAGGC CACCTTGTTC TGGAACAGCC AGAGCCTGGC TGAAAAAGAC  CATCTCGTTG CCGCGTTCAG GTTTGAACTG TCCAAGGTCG AACTGCCCGA GATTCGCCAG CGCATGGTTG ATAACCTGGC GCACGTTGAC CTCAAACTGG CGGCGCGGGT AGCGGCATCG  CTGGGAATCA ATGCGCCCGA CCCTAAAGCG GCGGCGGGCC GGCTGGGTTT TCGCGATCAC AAAACGACCA GCAAGGTCAG CGAAGAGCCA GCGTTAAGCA TGGCAGCACG GCCTGGCGCG  AGCATCAAGA CCCGCAAGAT CGCCGTTTTG GTGGCAGATG GGGTCGATGC CCCTCCCCTG CGGCGACTGC TTCAGGATAT GGCAGCGACG GGCGCCGTCT GCAAACTCGT TGCCTCGCGA  CTTGGAAGCG TCAGCACGCT CGGTGGCAAA CAGCTTGTGG TTGACCACAC CTTTGCAAAC ATGCCTTCGG TCATGTTTGA TGCGGTATTG ATTCCTGGTG GAAATGAGAG CATCACAAGC  TTATGTACTT TGGGTGAGGC TGTGCATTTT GTACTTGAAG CCTATAAGCA CGGCAAGACC ATCTGCGCAT TGAACGAAGG CAGCCAGTTG CTCGCCACCC TGGGGTTCAG CAATGAAAAA  AATCCAGAAC TGATCAATGT GCCTACGCCG GGGATTTTAT TGGCCGATGC CCGCAAAGTA CTTGATGGAC AGGTGACGCA GGATTTCATT GCGGCCATTG CCCTTCATCG GCATTGGGAC 
CGGTTGAATG CCGAGGCGGT TCCAGCCTGA 

Retrieve as FASTA