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Entry information : SmRboh06-2_8 (SmRboh06b_8)
Entry ID 7391
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh06-2_8 (SmRboh06b_8)
Name (synonym) SmRboh06-2_8 (SmRboh06b_8)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh06-2_8
start..stop		 S start..stop
SmRboh06-1_0 1425 0 67..756 1..711
SmRboh04-1_39 942 0 15..756 29..788
SmRboh04-2_88 935 0 15..756 29..789
SmRboh03-2_66 915 0 2..756 22..796
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1937638..1937833 194 N° 2 1937386..1937575 188 N° 3 1937283..1937331 47 N° 4 1937104..1937217 112
N° 5 1936628..1937035 406 N° 6 1936182..1936568 385 N° 7 1936038..1936133 94 N° 8 1935866..1935981 114
N° 9 1935693..1935815 121 N° 10 1935278..1935551 272 N° 11 1935095..1935223 127 N° 12 1934832..1935020 187
complement(join(1934832..1935020,1935095..1935223,1935278..1935551,1935693..1935 815,1935866..1935981,1936038..1936133,1936182..1936568,1936628..1937035,1937104. .1937217,1937283..1937331,1937386..1937575,1937638..1937833))


exon

Literature and cross-references SmRboh06-2_8 (SmRboh06b_8)
DNA ref. Phytozome 12:   scaffold_8 (1937833..1934832)
mRNA ref. JGI transcript:   86677
Protein sequence: SmRboh06-2_8 (SmRboh06b_8)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   756 (294)
PWM (Da):   %s   85329.19 (31081.1) Transmb domain:   %s   o374-396i417-439o449-466i582-599o
PI (pH):   %s   8.51 (6.65) Peptide Signal:   %s   cut: 29 range:29-322
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPVVEDEDASAARNNVNSALEGLRFIDKRTASAGDEAVWHRVMER
FEKLSSSDGKLPPGRFGACIGMPESEEFAAELLGVLRRRRAHSRGVTTSAVEDRHDIGKDELWDLWMDLTDKTTASRMQIFFDLCDRDRDGKISGSELKAILLSASANRLSILDEQAEEYAALLMEELDREKKGEVGISQ
LESLLSKRAFEADSFRQHYQSHHPCNAERLGRLQFLACSTKNAFQEDWRRLWIVGVWFGAMAVLFMWKSMQYSYRSGFEVMGYCVSMAKGAAETLKLNMALILFPVCRNTITWLRSTRLG
SVIPFDDSISFHKTVAGAICLGVLIHGGAHLTCDFPRIANAESKTFMRTLGRDFHGCQPSMLGMVMSVEGVTGIAMVILMAVSFLLATNLARKNRLKLRRPFDKLTGFNVFWYSHHLFAI
VYALLIVHSTLLFLTHKWSEKTTWLYILVPTVLYIGERFLRVSRACVYKVDIVQAAIFPGNVLSLHMTKPPGFKYQSGMYIFIQCPSISPFEWHPFSITSAPGDEHLSVHVRSLGDWTEE
IMRTFAKVHNDSRLFPKLYIDGPYGAAAQDYRKYDVMLLVGLGIGATPFISILRDMLNTQTGKPEYQQSPRRCPSHAYFYWVTKEQGSFQWFKGVMNEVAEMDHAVIEMHNYLTCVHEEG
DARSALITLVQALHHAKSGVDIVSGTRVRTHFARPNWNKVFARLAANHPGARVGVFYCGMASAAKELEGIAWTFSQRTSTRFEFRKESF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGGTGGTGGAGGACGAGGATGCCAGTGCTGCCAGGAACAATGTGAATAGCGCGCTGGAGGGCCTCCGCTTTATCGATAAGCGCACGGCGAGCGCTGGGGACGAGGCGGTGTGGCAC
AGAGTGATGGAGCGATTCGAGAAGCTCTCGAGCAGCGATGGAAAGCTCCCGCCTGGCCGATTTGGCGCGTGCATTGGTATTTAGAGGACGATTTTCTTGGTTCTTGTGGAGTATTAGGTT
TCTTTGATCGCAATGCAGGGGGATGCCGGAGAGCGAGGAGTTTGCCGCGGAGCTCCTGGGCGTTTTGCGGCGCCGGAGAGCGCACTCCCGGGGCGTCACCACCAGCGCCGTCGAGGATCG
TCACGACATTGGCAAGGATGAGCTCTGGGATCTCTGGATGGATCTCACAGATAAGACGACCGCCTCGAGGATGCAAATCTTCTTCGATCTGTAAGGATTTCTTTCTAGAAATGCCCTGTG
ATCGATCGGTCGTGTGCTTCGCAGATATGCGATCGAGACCGGGATGGAAAGATCAGTGGGTCGGAGCTAAAAAGTGTACGTTCGAGCTAGTTTCTTATTTTCTCCAGACTATAAGAAAGC
TTATGGTTGATCACTCTCAGGCGCCATCCTTCTGAGCGCGTCGGCCAACCGACTCTCGATTCTCGACGAGCAGGCGGAGGAGTACGCGGCATTGTTGATGGAAGAACTGGATCGTGAGAA
GAAAGGCGAAGTTGGCGTAAGTTTTTCTTTTTCGTCTTCGATTACATTCTTTACTCAAACTCGACTCGATCATCTTCATCACAGATATATCACAGCTCGAGAGCTTATTAAGCAAGCGCG
CCTTTGAGGCTGATTCGTTCCGGCAGCACTACCAGAGCCATCACCCGTGTAACGCCGAAAGGCTGGGGAGGCTACAGTTCCTTGCTTGCAGCACCAAGAATGCTTTCCAAGAGGATTGGC
GTCGACTCTGGATTGTTGGCGTGTGGTTTGGAGCCATGGCCGTGCTGTTTATGTGGAAGTCCATGCAGTACAGCTACCGGTCCGGCTTTGAAGTGATGGGGTATTGCGTGAGCATGGCCA
AAGGTGCTGCCGAGACACTCAAGCTCAACATGGCACTCATCCTTTTCCCTGTTTGTAGAAACACTATAACGTGGCTCCGCTCTACCAGGCTCGGCTCAGTGATTCCCTTCGATGACAGCA
TCAGCTTTCACAAGGTAAAAAAGTCCATTTCTTTTTTTCTGTAAGCTTCTTTGTTTACTGTTTTCATACACAGACACAGTGGCAGGAGCTATTTGTTTGGGAGTGCTTATTCACGGAGGA
GCTCATTTGACCTGTGACTTCCCCCGGATTGCCAATGCAGAGTCGAAGACTTTCATGCGTACTTTGGGAAGAGACTTTCACGGCTGCCAGCCTTCTATGCTGGGCATGGTCATGTCCGTC
GAAGGCGTGACAGGGATCGCGATGGTTATATTGATGGCGGTGTCGTTTCTTCTTGCGACCAACCTCGCCAGGAAGAACAGGCTCAAGCTCCGCCGACCCTTTGACAAACTTACCGGGTTC
AACGTGTTCTGGTATTCTCACCATCTATTCGCCATTGTCTACGCTCTCTTGATTGTTCACTCGACATTACTTTTCCTCACGCACAAATGGTCAGAGAAAACGGTATGTGTGTCAGTATTT
GTCTATATACTAATGTTTTTTTCTCCATAGACACGTGGTTGTACATTCTTGTTCCAACAGTTCTTTACATTGGAGAACGGTTTTTGAGAGTATCTAGAGCATGCGTTTACAAGGTTGACA
TTGTACAGGTAATTATACTAAATTTTTGTAACTTACCAGATCAATGAACTCGTTTGTTTTCTAGGCGCTGCCATTTTTCCCGGAAATGTTTTGTCTCTTCACATGACAAAACCTCCCGGC
TTTAAATACCAGAGTGGGATGTACATCTTTATTCAATGCCCCTCAATATCGCCATTCGAATGGTAAGACCTTGAAACTTCTCGGATACAATGTTTACGTGTATGCGATGTAGGCGCACCC
GTTTTCAATCACGTCAGCACCAGGAGATGAACACCTCAGTGTTCATGTTCGCAGCTTGGGGGACTGGACGGAAGAGATCATGAGGACATTCGCAAAGGTGCACAATGATTCTCGATTGTG
CTCGAGTTCTTACCACAGACATTAGGAGATCGAAGCACAAGGAGAAGACAGTGGTGACGAAGGCGCACTCAGAAGGTAATGAGTGAAATTTACTCAAAAGAAAACCAAAAGGCACAATCA
AACTGAATGAATGAACAGATATTTCCAAAGCTTTACATAGATGGACCTTACGGAGCTGCAGCGCAGGATTACCGCAAATACGACGTGATGCTCCTTGTCGGACTTGGAATCGGGGCAACG
CCGTTTATCAGCATTCTCAGGGACATGCTCAACACTCAGACGGGGAAGCCGGAGTACCAGCAGTCCCCGCGACGCTGTCCAAGCCACGCTTACTTCTACTGGGTGACCAAGGAACAAGGC
TCCTTCCAGTGGTTCAAGGGGGTGATGAACGAGGTGGCCGAGATGGATCACAAGGTACAACACAATTTTTTGTCTAAGTCTTCCTGAGCTATGCTTGTGCATCCACAGGCGCAGTGATTG
AAATGCACAACTATCTGACGTGCGTTCACGAGGAAGGAGACGCTCGCTCGGCCCTGATAACGCTCGTCCAGGCCCTCCATCACGCTAAGAGTGGCGTGGACATTGTCTCAGGAACTCGGG
TATAGCCAAACTCTTTTCTCCTTTTCGCTCTGAATTTCTAGCTGCCTGGTGCTAACGCGGTCGAGCGAAACAGGTGTTCGCACGCACTTTGCTCGGCCCAACTGGAACAAAGTTTTCGCG
AGGCTGGCCGCAAACCATCCCGGTGCCCGTGTCGGCGTGTTCTACTGCGGCATGGCCTCGGCAGCCAAGGAGCTGGAAGGAATCGCCTGGACCTTCTCGCAGAGAACCAGCACCAGGTTT
GAGTTTCGAAAGGAGAGCTTTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGGTGGTGGAGGACGAGGATGCCAGTGCTGCCAGGAACAATGTGAATAGCGCGCTGGAGGGCCTCCGCTTTATCGATAAGCGCACGGCGAGCGCTGGGGACGAGGCGGTGTGGCAC
AGAGTGATGGAGCGATTCGAGAAGCTCTCGAGCAGCGATGGAAAGCTCCCGCCTGGCCGATTTGGCGCGTGCATTGGGATGCCGGAGAGCGAGGAGTTTGCCGCGGAGCTCCTGGGCGTT
TTGCGGCGCCGGAGAGCGCACTCCCGGGGCGTCACCACCAGCGCCGTCGAGGATCGTCACGACATTGGCAAGGATGAGCTCTGGGATCTCTGGATGGATCTCACAGATAAGACGACCGCC
TCGAGGATGCAAATCTTCTTCGATCTATGCGATCGAGACCGGGATGGAAAGATCAGTGGGTCGGAGCTAAAAAGTGCCATCCTTCTGAGCGCGTCGGCCAACCGACTCTCGATTCTCGAC
GAGCAGGCGGAGGAGTACGCGGCATTGTTGATGGAAGAACTGGATCGTGAGAAGAAAGGCGAAGTTGGCATATCACAGCTCGAGAGCTTATTAAGCAAGCGCGCCTTTGAGGCTGATTCG
TTCCGGCAGCACTACCAGAGCCATCACCCGTGTAACGCCGAAAGGCTGGGGAGGCTACAGTTCCTTGCTTGCAGCACCAAGAATGCTTTCCAAGAGGATTGGCGTCGACTCTGGATTGTT
GGCGTGTGGTTTGGAGCCATGGCCGTGCTGTTTATGTGGAAGTCCATGCAGTACAGCTACCGGTCCGGCTTTGAAGTGATGGGGTATTGCGTGAGCATGGCCAAAGGTGCTGCCGAGACA
CTCAAGCTCAACATGGCACTCATCCTTTTCCCTGTTTGTAGAAACACTATAACGTGGCTCCGCTCTACCAGGCTCGGCTCAGTGATTCCCTTCGATGACAGCATCAGCTTTCACAAGACA
GTGGCAGGAGCTATTTGTTTGGGAGTGCTTATTCACGGAGGAGCTCATTTGACCTGTGACTTCCCCCGGATTGCCAATGCAGAGTCGAAGACTTTCATGCGTACTTTGGGAAGAGACTTT
CACGGCTGCCAGCCTTCTATGCTGGGCATGGTCATGTCCGTCGAAGGCGTGACAGGGATCGCGATGGTTATATTGATGGCGGTGTCGTTTCTTCTTGCGACCAACCTCGCCAGGAAGAAC
AGGCTCAAGCTCCGCCGACCCTTTGACAAACTTACCGGGTTCAACGTGTTCTGGTATTCTCACCATCTATTCGCCATTGTCTACGCTCTCTTGATTGTTCACTCGACATTACTTTTCCTC
ACGCACAAATGGTCAGAGAAAACGACGTGGTTGTACATTCTTGTTCCAACAGTTCTTTACATTGGAGAACGGTTTTTGAGAGTATCTAGAGCATGCGTTTACAAGGTTGACATTGTACAG
GCTGCCATTTTTCCCGGAAATGTTTTGTCTCTTCACATGACAAAACCTCCCGGCTTTAAATACCAGAGTGGGATGTACATCTTTATTCAATGCCCCTCAATATCGCCATTCGAATGGCAC
CCGTTTTCAATCACGTCAGCACCAGGAGATGAACACCTCAGTGTTCATGTTCGCAGCTTGGGGGACTGGACGGAAGAGATCATGAGGACATTCGCAAAGGTGCACAATGATTCTCGATTA
TTTCCAAAGCTTTACATAGATGGACCTTACGGAGCTGCAGCGCAGGATTACCGCAAATACGACGTGATGCTCCTTGTCGGACTTGGAATCGGGGCAACGCCGTTTATCAGCATTCTCAGG
GACATGCTCAACACTCAGACGGGGAAGCCGGAGTACCAGCAGTCCCCGCGACGCTGTCCAAGCCACGCTTACTTCTACTGGGTGACCAAGGAACAAGGCTCCTTCCAGTGGTTCAAGGGG
GTGATGAACGAGGTGGCCGAGATGGATCACAAGGCAGTGATTGAAATGCACAACTATCTGACGTGCGTTCACGAGGAAGGAGACGCTCGCTCGGCCCTGATAACGCTCGTCCAGGCCCTC
CATCACGCTAAGAGTGGCGTGGACATTGTCTCAGGAACTCGGGTTCGCACGCACTTTGCTCGGCCCAACTGGAACAAAGTTTTCGCGAGGCTGGCCGCAAACCATCCCGGTGCCCGTGTC
GGCGTGTTCTACTGCGGCATGGCCTCGGCAGCCAAGGAGCTGGAAGGAATCGCCTGGACCTTCTCGCAGAGAACCAGCACCAGGTTTGAGTTTCGAAAGGAGAGCTTTTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGGTGG TGGAGGACGA GGATGCCAGT GCTGCCAGGA ACAATGTGAA TAGCGCGCTG GAGGGCCTCC GCTTTATCGA TAAGCGCACG GCGAGCGCTG GGGACGAGGC GGTGTGGCAC  AGAGTGATGG AGCGATTCGA GAAGCTCTCG AGCAGCGATG GAAAGCTCCC GCCTGGCCGA TTTGGCGCGT GCATTGGGAT GCCGGAGAGC GAGGAGTTTG CCGCGGAGCT CCTGGGCGTT  TTGCGGCGCC GGAGAGCGCA CTCCCGGGGC GTCACCACCA GCGCCGTCGA GGATCGTCAC GACATTGGCA AGGATGAGCT CTGGGATCTC TGGATGGATC TCACAGATAA GACGACCGCC  TCGAGGATGC AAATCTTCTT CGATCTATGC GATCGAGACC GGGATGGAAA GATCAGTGGG TCGGAGCTAA AAAGTGCCAT CCTTCTGAGC GCGTCGGCCA ACCGACTCTC GATTCTCGAC  GAGCAGGCGG AGGAGTACGC GGCATTGTTG ATGGAAGAAC TGGATCGTGA GAAGAAAGGC GAAGTTGGCA TATCACAGCT CGAGAGCTTA TTAAGCAAGC GCGCCTTTGA GGCTGATTCG  TTCCGGCAGC ACTACCAGAG CCATCACCCG TGTAACGCCG AAAGGCTGGG GAGGCTACAG TTCCTTGCTT GCAGCACCAA GAATGCTTTC CAAGAGGATT GGCGTCGACT CTGGATTGTT  GGCGTGTGGT TTGGAGCCAT GGCCGTGCTG TTTATGTGGA AGTCCATGCA GTACAGCTAC CGGTCCGGCT TTGAAGTGAT GGGGTATTGC GTGAGCATGG CCAAAGGTGC TGCCGAGACA  CTCAAGCTCA ACATGGCACT CATCCTTTTC CCTGTTTGTA GAAACACTAT AACGTGGCTC CGCTCTACCA GGCTCGGCTC AGTGATTCCC TTCGATGACA GCATCAGCTT TCACAAGACA  GTGGCAGGAG CTATTTGTTT GGGAGTGCTT ATTCACGGAG GAGCTCATTT GACCTGTGAC TTCCCCCGGA TTGCCAATGC AGAGTCGAAG ACTTTCATGC GTACTTTGGG AAGAGACTTT  CACGGCTGCC AGCCTTCTAT GCTGGGCATG GTCATGTCCG TCGAAGGCGT GACAGGGATC GCGATGGTTA TATTGATGGC GGTGTCGTTT CTTCTTGCGA CCAACCTCGC CAGGAAGAAC  AGGCTCAAGC TCCGCCGACC CTTTGACAAA CTTACCGGGT TCAACGTGTT CTGGTATTCT CACCATCTAT TCGCCATTGT CTACGCTCTC TTGATTGTTC ACTCGACATT ACTTTTCCTC  ACGCACAAAT GGTCAGAGAA AACGACGTGG TTGTACATTC TTGTTCCAAC AGTTCTTTAC ATTGGAGAAC GGTTTTTGAG AGTATCTAGA GCATGCGTTT ACAAGGTTGA CATTGTACAG  GCTGCCATTT TTCCCGGAAA TGTTTTGTCT CTTCACATGA CAAAACCTCC CGGCTTTAAA TACCAGAGTG GGATGTACAT CTTTATTCAA TGCCCCTCAA TATCGCCATT CGAATGGCAC  CCGTTTTCAA TCACGTCAGC ACCAGGAGAT GAACACCTCA GTGTTCATGT TCGCAGCTTG GGGGACTGGA CGGAAGAGAT CATGAGGACA TTCGCAAAGG TGCACAATGA TTCTCGATTA  TTTCCAAAGC TTTACATAGA TGGACCTTAC GGAGCTGCAG CGCAGGATTA CCGCAAATAC GACGTGATGC TCCTTGTCGG ACTTGGAATC GGGGCAACGC CGTTTATCAG CATTCTCAGG  GACATGCTCA ACACTCAGAC GGGGAAGCCG GAGTACCAGC AGTCCCCGCG ACGCTGTCCA AGCCACGCTT ACTTCTACTG GGTGACCAAG GAACAAGGCT CCTTCCAGTG GTTCAAGGGG  GTGATGAACG AGGTGGCCGA GATGGATCAC AAGGCAGTGA TTGAAATGCA CAACTATCTG ACGTGCGTTC ACGAGGAAGG AGACGCTCGC TCGGCCCTGA TAACGCTCGT CCAGGCCCTC  CATCACGCTA AGAGTGGCGT GGACATTGTC TCAGGAACTC GGGTTCGCAC GCACTTTGCT CGGCCCAACT GGAACAAAGT TTTCGCGAGG CTGGCCGCAA ACCATCCCGG TGCCCGTGTC 
GGCGTGTTCT ACTGCGGCAT GGCCTCGGCA GCCAAGGAGC TGGAAGGAAT CGCCTGGACC TTCTCGCAGA GAACCAGCAC CAGGTTTGAG TTTCGAAAGG AGAGCTTTTA A 

Retrieve as FASTA