View Redoxidase 7391

Entry information : SmRboh06-2_8 (SmRboh06b_8)

Entry ID	7391
Creation	0000-00-00 (Christophe Dunand)
Last sequence changes	2010-06-01 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-01-25 (Toky Ramarohetra (Scipio))

Peroxidase information: SmRboh06-2_8 (SmRboh06b_8)

Name (synonym)

SmRboh06-2_8 (SmRboh06b_8)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmRboh06-2_8 start..stop	S start..stop
SmRboh06-1_0	1425	0	67..756	1..711
SmRboh04-1_39	942	0	15..756	29..788
SmRboh04-2_88	935	0	15..756	29..789
SmRboh03-2_66	915	0	2..756	22..796

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7391' 'complement(join(1934832..1935020,1935095..1935223,1935278..1935551,1935693..1935815,1935866..1935981,1936038..1936133,1936182..1936568,1936628..1937035,1937104..1937217,1937283..1937331,1937386..1937575,1937638..1937833))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1937638..1937833	194	N° 2	1937386..1937575	188	N° 3	1937283..1937331	47	N° 4	1937104..1937217	112
N° 5	1936628..1937035	406	N° 6	1936182..1936568	385	N° 7	1936038..1936133	94	N° 8	1935866..1935981	114
N° 9	1935693..1935815	121	N° 10	1935278..1935551	272	N° 11	1935095..1935223	127	N° 12	1934832..1935020	187
complement(join(1934832..1935020,1935095..1935223,1935278..1935551,1935693..1935 815,1935866..1935981,1936038..1936133,1936182..1936568,1936628..1937035,1937104. .1937217,1937283..1937331,1937386..1937575,1937638..1937833))

Literature and cross-references SmRboh06-2_8 (SmRboh06b_8)

DNA ref.	Phytozome 12: scaffold_8 (1937833..1934832)
mRNA ref.	JGI transcript: 86677

Protein sequence: SmRboh06-2_8 (SmRboh06b_8)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	756 (294)
PWM (Da):	85329.19 (31081.1)	Transmb domain:	o374-396i417-439o449-466i582-599o
PI (pH):	8.51 (6.65)	Peptide Signal:	cut: 29 range:29-322

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MPVVEDEDASAARNNVNSALEGLRFIDKRTASAGDEAVWHRVMER
FEKLSSSDGKLPPGRFGACIGMPESEEFAAELLGVLRRRRAHSRGVTTSAVEDRHDIGKDELWDLWMDLTDKTTASRMQIFFDLCDRDRDGKISGSELKAILLSASANRLSILDEQAEEYAALLMEELDREKKGEVGISQ
LESLLSKRAFEADSFRQHYQSHHPCNAERLGRLQFLACSTKNAFQEDWRRLWIVGVWFGAMAVLFMWKSMQYSYRSGFEVMGYCVSMAKGAAETLKLNMALILFPVCRNTITWLRSTRLG
SVIPFDDSISFHKTVAGAICLGVLIHGGAHLTCDFPRIANAESKTFMRTLGRDFHGCQPSMLGMVMSVEGVTGIAMVILMAVSFLLATNLARKNRLKLRRPFDKLTGFNVFWYSHHLFAI
VYALLIVHSTLLFLTHKWSEKTTWLYILVPTVLYIGERFLRVSRACVYKVDIVQAAIFPGNVLSLHMTKPPGFKYQSGMYIFIQCPSISPFEWHPFSITSAPGDEHLSVHVRSLGDWTEE
IMRTFAKVHNDSRLFPKLYIDGPYGAAAQDYRKYDVMLLVGLGIGATPFISILRDMLNTQTGKPEYQQSPRRCPSHAYFYWVTKEQGSFQWFKGVMNEVAEMDHAVIEMHNYLTCVHEEG
DARSALITLVQALHHAKSGVDIVSGTRVRTHFARPNWNKVFARLAANHPGARVGVFYCGMASAAKELEGIAWTFSQRTSTRFEFRKESF*

Retrieve as FASTA

Remarks

Complete sequence from genomic (11 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCCGGTGGTGGAGGACGAGGATGCCAGTGCTGCCAGGAACAATGTGAATAGCGCGCTGGAGGGCCTCCGCTTTATCGATAAGCGCACGGCGAGCGCTGGGGACGAGGCGGTGTGGCAC
AGAGTGATGGAGCGATTCGAGAAGCTCTCGAGCAGCGATGGAAAGCTCCCGCCTGGCCGATTTGGCGCGTGCATTGGTATTTAGAGGACGATTTTCTTGGTTCTTGTGGAGTATTAGGTT
TCTTTGATCGCAATGCAGGGGGATGCCGGAGAGCGAGGAGTTTGCCGCGGAGCTCCTGGGCGTTTTGCGGCGCCGGAGAGCGCACTCCCGGGGCGTCACCACCAGCGCCGTCGAGGATCG
TCACGACATTGGCAAGGATGAGCTCTGGGATCTCTGGATGGATCTCACAGATAAGACGACCGCCTCGAGGATGCAAATCTTCTTCGATCTGTAAGGATTTCTTTCTAGAAATGCCCTGTG
ATCGATCGGTCGTGTGCTTCGCAGATATGCGATCGAGACCGGGATGGAAAGATCAGTGGGTCGGAGCTAAAAAGTGTACGTTCGAGCTAGTTTCTTATTTTCTCCAGACTATAAGAAAGC
TTATGGTTGATCACTCTCAGGCGCCATCCTTCTGAGCGCGTCGGCCAACCGACTCTCGATTCTCGACGAGCAGGCGGAGGAGTACGCGGCATTGTTGATGGAAGAACTGGATCGTGAGAA
GAAAGGCGAAGTTGGCGTAAGTTTTTCTTTTTCGTCTTCGATTACATTCTTTACTCAAACTCGACTCGATCATCTTCATCACAGATATATCACAGCTCGAGAGCTTATTAAGCAAGCGCG
CCTTTGAGGCTGATTCGTTCCGGCAGCACTACCAGAGCCATCACCCGTGTAACGCCGAAAGGCTGGGGAGGCTACAGTTCCTTGCTTGCAGCACCAAGAATGCTTTCCAAGAGGATTGGC
GTCGACTCTGGATTGTTGGCGTGTGGTTTGGAGCCATGGCCGTGCTGTTTATGTGGAAGTCCATGCAGTACAGCTACCGGTCCGGCTTTGAAGTGATGGGGTATTGCGTGAGCATGGCCA
AAGGTGCTGCCGAGACACTCAAGCTCAACATGGCACTCATCCTTTTCCCTGTTTGTAGAAACACTATAACGTGGCTCCGCTCTACCAGGCTCGGCTCAGTGATTCCCTTCGATGACAGCA
TCAGCTTTCACAAGGTAAAAAAGTCCATTTCTTTTTTTCTGTAAGCTTCTTTGTTTACTGTTTTCATACACAGACACAGTGGCAGGAGCTATTTGTTTGGGAGTGCTTATTCACGGAGGA
GCTCATTTGACCTGTGACTTCCCCCGGATTGCCAATGCAGAGTCGAAGACTTTCATGCGTACTTTGGGAAGAGACTTTCACGGCTGCCAGCCTTCTATGCTGGGCATGGTCATGTCCGTC
GAAGGCGTGACAGGGATCGCGATGGTTATATTGATGGCGGTGTCGTTTCTTCTTGCGACCAACCTCGCCAGGAAGAACAGGCTCAAGCTCCGCCGACCCTTTGACAAACTTACCGGGTTC
AACGTGTTCTGGTATTCTCACCATCTATTCGCCATTGTCTACGCTCTCTTGATTGTTCACTCGACATTACTTTTCCTCACGCACAAATGGTCAGAGAAAACGGTATGTGTGTCAGTATTT
GTCTATATACTAATGTTTTTTTCTCCATAGACACGTGGTTGTACATTCTTGTTCCAACAGTTCTTTACATTGGAGAACGGTTTTTGAGAGTATCTAGAGCATGCGTTTACAAGGTTGACA
TTGTACAGGTAATTATACTAAATTTTTGTAACTTACCAGATCAATGAACTCGTTTGTTTTCTAGGCGCTGCCATTTTTCCCGGAAATGTTTTGTCTCTTCACATGACAAAACCTCCCGGC
TTTAAATACCAGAGTGGGATGTACATCTTTATTCAATGCCCCTCAATATCGCCATTCGAATGGTAAGACCTTGAAACTTCTCGGATACAATGTTTACGTGTATGCGATGTAGGCGCACCC
GTTTTCAATCACGTCAGCACCAGGAGATGAACACCTCAGTGTTCATGTTCGCAGCTTGGGGGACTGGACGGAAGAGATCATGAGGACATTCGCAAAGGTGCACAATGATTCTCGATTGTG
CTCGAGTTCTTACCACAGACATTAGGAGATCGAAGCACAAGGAGAAGACAGTGGTGACGAAGGCGCACTCAGAAGGTAATGAGTGAAATTTACTCAAAAGAAAACCAAAAGGCACAATCA
AACTGAATGAATGAACAGATATTTCCAAAGCTTTACATAGATGGACCTTACGGAGCTGCAGCGCAGGATTACCGCAAATACGACGTGATGCTCCTTGTCGGACTTGGAATCGGGGCAACG
CCGTTTATCAGCATTCTCAGGGACATGCTCAACACTCAGACGGGGAAGCCGGAGTACCAGCAGTCCCCGCGACGCTGTCCAAGCCACGCTTACTTCTACTGGGTGACCAAGGAACAAGGC
TCCTTCCAGTGGTTCAAGGGGGTGATGAACGAGGTGGCCGAGATGGATCACAAGGTACAACACAATTTTTTGTCTAAGTCTTCCTGAGCTATGCTTGTGCATCCACAGGCGCAGTGATTG
AAATGCACAACTATCTGACGTGCGTTCACGAGGAAGGAGACGCTCGCTCGGCCCTGATAACGCTCGTCCAGGCCCTCCATCACGCTAAGAGTGGCGTGGACATTGTCTCAGGAACTCGGG
TATAGCCAAACTCTTTTCTCCTTTTCGCTCTGAATTTCTAGCTGCCTGGTGCTAACGCGGTCGAGCGAAACAGGTGTTCGCACGCACTTTGCTCGGCCCAACTGGAACAAAGTTTTCGCG
AGGCTGGCCGCAAACCATCCCGGTGCCCGTGTCGGCGTGTTCTACTGCGGCATGGCCTCGGCAGCCAAGGAGCTGGAAGGAATCGCCTGGACCTTCTCGCAGAGAACCAGCACCAGGTTT
GAGTTTCGAAAGGAGAGCTTTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCCGGTGGTGGAGGACGAGGATGCCAGTGCTGCCAGGAACAATGTGAATAGCGCGCTGGAGGGCCTCCGCTTTATCGATAAGCGCACGGCGAGCGCTGGGGACGAGGCGGTGTGGCAC
AGAGTGATGGAGCGATTCGAGAAGCTCTCGAGCAGCGATGGAAAGCTCCCGCCTGGCCGATTTGGCGCGTGCATTGGGATGCCGGAGAGCGAGGAGTTTGCCGCGGAGCTCCTGGGCGTT
TTGCGGCGCCGGAGAGCGCACTCCCGGGGCGTCACCACCAGCGCCGTCGAGGATCGTCACGACATTGGCAAGGATGAGCTCTGGGATCTCTGGATGGATCTCACAGATAAGACGACCGCC
TCGAGGATGCAAATCTTCTTCGATCTATGCGATCGAGACCGGGATGGAAAGATCAGTGGGTCGGAGCTAAAAAGTGCCATCCTTCTGAGCGCGTCGGCCAACCGACTCTCGATTCTCGAC
GAGCAGGCGGAGGAGTACGCGGCATTGTTGATGGAAGAACTGGATCGTGAGAAGAAAGGCGAAGTTGGCATATCACAGCTCGAGAGCTTATTAAGCAAGCGCGCCTTTGAGGCTGATTCG
TTCCGGCAGCACTACCAGAGCCATCACCCGTGTAACGCCGAAAGGCTGGGGAGGCTACAGTTCCTTGCTTGCAGCACCAAGAATGCTTTCCAAGAGGATTGGCGTCGACTCTGGATTGTT
GGCGTGTGGTTTGGAGCCATGGCCGTGCTGTTTATGTGGAAGTCCATGCAGTACAGCTACCGGTCCGGCTTTGAAGTGATGGGGTATTGCGTGAGCATGGCCAAAGGTGCTGCCGAGACA
CTCAAGCTCAACATGGCACTCATCCTTTTCCCTGTTTGTAGAAACACTATAACGTGGCTCCGCTCTACCAGGCTCGGCTCAGTGATTCCCTTCGATGACAGCATCAGCTTTCACAAGACA
GTGGCAGGAGCTATTTGTTTGGGAGTGCTTATTCACGGAGGAGCTCATTTGACCTGTGACTTCCCCCGGATTGCCAATGCAGAGTCGAAGACTTTCATGCGTACTTTGGGAAGAGACTTT
CACGGCTGCCAGCCTTCTATGCTGGGCATGGTCATGTCCGTCGAAGGCGTGACAGGGATCGCGATGGTTATATTGATGGCGGTGTCGTTTCTTCTTGCGACCAACCTCGCCAGGAAGAAC
AGGCTCAAGCTCCGCCGACCCTTTGACAAACTTACCGGGTTCAACGTGTTCTGGTATTCTCACCATCTATTCGCCATTGTCTACGCTCTCTTGATTGTTCACTCGACATTACTTTTCCTC
ACGCACAAATGGTCAGAGAAAACGACGTGGTTGTACATTCTTGTTCCAACAGTTCTTTACATTGGAGAACGGTTTTTGAGAGTATCTAGAGCATGCGTTTACAAGGTTGACATTGTACAG
GCTGCCATTTTTCCCGGAAATGTTTTGTCTCTTCACATGACAAAACCTCCCGGCTTTAAATACCAGAGTGGGATGTACATCTTTATTCAATGCCCCTCAATATCGCCATTCGAATGGCAC
CCGTTTTCAATCACGTCAGCACCAGGAGATGAACACCTCAGTGTTCATGTTCGCAGCTTGGGGGACTGGACGGAAGAGATCATGAGGACATTCGCAAAGGTGCACAATGATTCTCGATTA
TTTCCAAAGCTTTACATAGATGGACCTTACGGAGCTGCAGCGCAGGATTACCGCAAATACGACGTGATGCTCCTTGTCGGACTTGGAATCGGGGCAACGCCGTTTATCAGCATTCTCAGG
GACATGCTCAACACTCAGACGGGGAAGCCGGAGTACCAGCAGTCCCCGCGACGCTGTCCAAGCCACGCTTACTTCTACTGGGTGACCAAGGAACAAGGCTCCTTCCAGTGGTTCAAGGGG
GTGATGAACGAGGTGGCCGAGATGGATCACAAGGCAGTGATTGAAATGCACAACTATCTGACGTGCGTTCACGAGGAAGGAGACGCTCGCTCGGCCCTGATAACGCTCGTCCAGGCCCTC
CATCACGCTAAGAGTGGCGTGGACATTGTCTCAGGAACTCGGGTTCGCACGCACTTTGCTCGGCCCAACTGGAACAAAGTTTTCGCGAGGCTGGCCGCAAACCATCCCGGTGCCCGTGTC
GGCGTGTTCTACTGCGGCATGGCCTCGGCAGCCAAGGAGCTGGAAGGAATCGCCTGGACCTTCTCGCAGAGAACCAGCACCAGGTTTGAGTTTCGAAAGGAGAGCTTTTAA

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCCGGTGG TGGAGGACGA GGATGCCAGT GCTGCCAGGA ACAATGTGAA TAGCGCGCTG GAGGGCCTCC GCTTTATCGA TAAGCGCACG GCGAGCGCTG GGGACGAGGC GGTGTGGCAC AGAGTGATGG AGCGATTCGA GAAGCTCTCG AGCAGCGATG GAAAGCTCCC GCCTGGCCGA TTTGGCGCGT GCATTGGGAT GCCGGAGAGC GAGGAGTTTG CCGCGGAGCT CCTGGGCGTT TTGCGGCGCC GGAGAGCGCA CTCCCGGGGC GTCACCACCA GCGCCGTCGA GGATCGTCAC GACATTGGCA AGGATGAGCT CTGGGATCTC TGGATGGATC TCACAGATAA GACGACCGCC TCGAGGATGC AAATCTTCTT CGATCTATGC GATCGAGACC GGGATGGAAA GATCAGTGGG TCGGAGCTAA AAAGTGCCAT CCTTCTGAGC GCGTCGGCCA ACCGACTCTC GATTCTCGAC GAGCAGGCGG AGGAGTACGC GGCATTGTTG ATGGAAGAAC TGGATCGTGA GAAGAAAGGC GAAGTTGGCA TATCACAGCT CGAGAGCTTA TTAAGCAAGC GCGCCTTTGA GGCTGATTCG TTCCGGCAGC ACTACCAGAG CCATCACCCG TGTAACGCCG AAAGGCTGGG GAGGCTACAG TTCCTTGCTT GCAGCACCAA GAATGCTTTC CAAGAGGATT GGCGTCGACT CTGGATTGTT GGCGTGTGGT TTGGAGCCAT GGCCGTGCTG TTTATGTGGA AGTCCATGCA GTACAGCTAC CGGTCCGGCT TTGAAGTGAT GGGGTATTGC GTGAGCATGG CCAAAGGTGC TGCCGAGACA CTCAAGCTCA ACATGGCACT CATCCTTTTC CCTGTTTGTA GAAACACTAT AACGTGGCTC CGCTCTACCA GGCTCGGCTC AGTGATTCCC TTCGATGACA GCATCAGCTT TCACAAGACA GTGGCAGGAG CTATTTGTTT GGGAGTGCTT ATTCACGGAG GAGCTCATTT GACCTGTGAC TTCCCCCGGA TTGCCAATGC AGAGTCGAAG ACTTTCATGC GTACTTTGGG AAGAGACTTT CACGGCTGCC AGCCTTCTAT GCTGGGCATG GTCATGTCCG TCGAAGGCGT GACAGGGATC GCGATGGTTA TATTGATGGC GGTGTCGTTT CTTCTTGCGA CCAACCTCGC CAGGAAGAAC AGGCTCAAGC TCCGCCGACC CTTTGACAAA CTTACCGGGT TCAACGTGTT CTGGTATTCT CACCATCTAT TCGCCATTGT CTACGCTCTC TTGATTGTTC ACTCGACATT ACTTTTCCTC ACGCACAAAT GGTCAGAGAA AACGACGTGG TTGTACATTC TTGTTCCAAC AGTTCTTTAC ATTGGAGAAC GGTTTTTGAG AGTATCTAGA GCATGCGTTT ACAAGGTTGA CATTGTACAG GCTGCCATTT TTCCCGGAAA TGTTTTGTCT CTTCACATGA CAAAACCTCC CGGCTTTAAA TACCAGAGTG GGATGTACAT CTTTATTCAA TGCCCCTCAA TATCGCCATT CGAATGGCAC CCGTTTTCAA TCACGTCAGC ACCAGGAGAT GAACACCTCA GTGTTCATGT TCGCAGCTTG GGGGACTGGA CGGAAGAGAT CATGAGGACA TTCGCAAAGG TGCACAATGA TTCTCGATTA TTTCCAAAGC TTTACATAGA TGGACCTTAC GGAGCTGCAG CGCAGGATTA CCGCAAATAC GACGTGATGC TCCTTGTCGG ACTTGGAATC GGGGCAACGC CGTTTATCAG CATTCTCAGG GACATGCTCA ACACTCAGAC GGGGAAGCCG GAGTACCAGC AGTCCCCGCG ACGCTGTCCA AGCCACGCTT ACTTCTACTG GGTGACCAAG GAACAAGGCT CCTTCCAGTG GTTCAAGGGG GTGATGAACG AGGTGGCCGA GATGGATCAC AAGGCAGTGA TTGAAATGCA CAACTATCTG ACGTGCGTTC ACGAGGAAGG AGACGCTCGC TCGGCCCTGA TAACGCTCGT CCAGGCCCTC CATCACGCTA AGAGTGGCGT GGACATTGTC TCAGGAACTC GGGTTCGCAC GCACTTTGCT CGGCCCAACT GGAACAAAGT TTTCGCGAGG CTGGCCGCAA ACCATCCCGG TGCCCGTGTC
GGCGTGTTCT ACTGCGGCAT GGCCTCGGCA GCCAAGGAGC TGGAAGGAAT CGCCTGGACC TTCTCGCAGA GAACCAGCAC CAGGTTTGAG TTTCGAAAGG AGAGCTTTTA A

Retrieve as FASTA