View Redoxidase 7392

Entry information : SmRboh09-1_82 (SmRboh09a_82)

Entry ID	7392
Creation	0000-00-00 (Christophe Dunand)
Last sequence changes	2010-06-01 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-01-25 (Toky Ramarohetra (Scipio))

Peroxidase information: SmRboh09-1_82 (SmRboh09a_82)

Name (synonym)

SmRboh09-1_82 (SmRboh09a_82)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmRboh09-1_82 start..stop	S start..stop
SmRboh09-2_83	1470	0	119..825	1..707
SmRboh02-2_137	981	0	2..825	71..902
SmRboh02-1_19	979	0	2..825	64..895
SmRboh05-1_24	943	0	54..825	122..901

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7392' 'join(711440..711791,711876..712035,712094..712142,712226..712339,712409..712834,712897..713283,713369..713464,713528..713643,713716..713818,713869..713954,714018..714171,714230..714346,714403..714531,714591..714669,714765..714874)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	711440..711791	350	N° 2	711876..712035	158	N° 3	712094..712142	47	N° 4	712226..712339	112
N° 5	712409..712834	424	N° 6	712897..713283	385	N° 7	713369..713464	94	N° 8	713528..713643	114
N° 9	713716..713818	101	N° 10	713869..713954	84	N° 11	714018..714171	152	N° 12	714230..714346	115
N° 13	714403..714531	127	N° 14	714591..714669	77	N° 15	714765..714874	108
join(711440..711791,711876..712035,712094..712142,712226..712339,712409..712834, 712897..713283,713369..713464,713528..713643,713716..713818,713869..713954,71401 8..714171,714230..714346,714403..714531,714591..714669,714765..714874)

Literature and cross-references SmRboh09-1_82 (SmRboh09a_82)

DNA ref.	Phytozome 12: scaffold_82 (711440..714874)
mRNA ref.	JGI transcript: 183259 [Incorrect prediction]

Protein sequence: SmRboh09-1_82 (SmRboh09a_82)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	825
PWM (Da):	93705.5	Transmb domain:	o284-306i422-444o471-493i652-669o
PI (pH):	9.99

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVNDDGVSVSSDRPLHRTESIASGGGEKRSAVVTAIKVKTAFTRLASTVRNHNSPKATKFDRAKQAKFSRTKSNALQGLRFLTGKNKKKVSWLDIERRFTVLAVDGSLSREKFGECIGME
TSEFAQALFDALVSSKKLENQQSISKEVLHAFWLQMSDDSFDSRMQIFFQMFDRNADGHISEEEVKIIMLSAATNKLAKLKAQADEFAALIMEELDPDKNGFIELSQLEALMRVPEPAHA
KDSFLNYSTTISRNLVGVKRKKHTPLLSFWKDSKFYLSENWRYLMFFGLWIATMAGLFAWKFFVYKQRAAFEVMGYCLCVAKGAAETLKLNMALVLFPVCRNTITWFRSTFVGNIVPFND
NLKFHMMIASGVAIGTVIHAGVHLACDFPRITSSSDELFMRTLGKSFHYKRQTYVDLLKSVAGVTGIASVLLMAFIFLLATPWFRRGQVKPLWPLHRLSGFNAFWYSHHLFIFVYVLLIV
HSLFIYLAHGWWQKTTWMYLAIPVALYASERLVRAIRAGLYTVRVVKAAVYPGNVLALYIQKPRGFKYKSGMYLFLKCPAISHLQWHPFSITSAPSDDYLSIHIRSAGDWTSKMKKIFSV
CHKPEVGKSGLLRAEYVDHDLEFQSQPRFPKLRIDGPYGAPAQDYMKYDVLLLVGLGIGATPFVSILRDILNHVNRDVNNGKKSGPTKVYFYWVTREQGSFEWFKGVMNEIAEMDHKRVI
EMHNYLTSVYEEGDARSALITMIQALNLAKNGVDILSGTRVRTHFARPNWKTVFSRLSAVHRHANIGVFYCGAPAVAKELDTLSREYTHQNSTTFDFHKENF

Retrieve as FASTA

Remarks

Complete sequence from genomic (14 introns). Incorrect prediction from JGI (confirmed by EST of the other haplotype).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTCAACGACGATGGAGTTTCAGTGTCTAGCGATCGTCCTCTCCATCGCACCGAGTCCATTGCTTCGGGTGGAGGCGAGAAGAGATCCGCTGTGGTCACGGCCATCAAAGTTAAGACT
GCTTTCACTCGTCTCGCCAGCACTGTCAGGAATCACAACTCTCCAAAGGCCACCAAGTTTGATCGAGCGAAGCAAGCAAAGTTTTCCAGGACAAAGTCCAATGCCCTCCAGGGACTTCGT
TTCCTTACCGGGAAGAACAAGAAGAAAGTGTCGTGGCTCGACATCGAAAGGAGATTCACGGTGCTGGCAGTGGATGGAAGCCTTTCTCGTGAAAAATTCGGTGAATGCATAGAGGTGAAG
TTCCAATGTTTTCTACCTTCCTTTTTCTTTTCTTCTTCAATCTTCTGACTATCAAGCTTTTGTGTTCTTTGCTTTCAGGAATGGAGACCTCGGAATTTGCTCAAGCGCTCTTCGATGCGC
TCGTCTCCAGCAAGAAACTCGAGAACCAGCAAAGCATTTCCAAGGAAGTTCTTCACGCCTTCTGGCTGCAAATGAGCGACGATAGCTTCGACTCTCGTATGCAAATTTTCTTCCAGATAT
GTAAGTTCTCGATTGTGATCAAGATGCAGTGATTTCGAATCGTTTCTTCGTTCCTCAGGTTCGACAGAAACGCAGACGGACATATATCAGAAGAAGAAGTCAAAGAGAGGTGATTGATTG
AGAGTGAGTGACAACCATCTTGCTCTTCTCTTAACTCTTTTTTTTTTTCCTTGGTGCGGCACAATCGTGTAGATTATCATGCTTAGTGCGGCAACCAACAAGCTTGCCAAGCTCAAGGCA
CAAGCCGACGAGTTTGCCGCGTTAATTATGGAAGAGTTGGATCCTGACAAGAATGGCTTCATTGAGAGGTAAATATTTCCACGATGCCATGATCGAGCTTCATAGTTTTCCTTGTCCACT
TTTCTTTTTCCTGGCAGCTTTCGCAGCTCGAAGCTTTGATGAGAGTTCCGGAGCCAGCGCATGCCAAAGACTCTTTCCTCAACTACAGCACAACCATCTCTCGGAATCTCGTCGGCGTCA
AGCGGAAAAAGCACACTCCACTTCTCTCCTTTTGGAAAGATTCGAAGTTCTACCTCTCCGAGAACTGGAGGTACCTCATGTTCTTCGGACTTTGGATTGCGACCATGGCGGGATTGTTCG
CGTGGAAGTTTTTCGTGTACAAGCAGCGAGCAGCTTTTGAAGTCATGGGATATTGTCTGTGCGTCGCAAAAGGTGCTGCCGAGACTCTCAAGCTCAACATGGCACTCGTGCTTTTCCCGG
TCTGTAGAAACACCATCACCTGGTTTCGTTCGACCTTCGTCGGCAACATCGTTCCGTTCAACGACAACCTCAAGTTTCATATGTGGTACTTACAACCTTTGATCTTTTGTTTTCGTCTTC
TTCTTCTGAAAGTTCTTTTTCGTCCAGATGATTGCGTCTGGTGTTGCAATTGGAACTGTGATTCACGCTGGAGTCCACTTGGCCTGCGACTTCCCGAGAATTACTAGCTCGTCTGACGAG
CTCTTCATGCGCACCCTCGGCAAAAGTTTTCATTACAAGAGACAAACGTACGTTGATCTGCTCAAGTCAGTGGCTGGGGTTACTGGGATCGCGAGCGTGCTGCTCATGGCTTTTATATTC
CTGCTAGCGACGCCATGGTTCAGGCGAGGCCAGGTAAAGCCACTGTGGCCTTTGCACAGGCTAAGCGGATTCAACGCCTTTTGGTACTCGCACCATTTGTTTATCTTTGTCTACGTCCTG
CTCATTGTCCACTCGCTTTTCATTTATTTGGCACATGGATGGTGGCAGAAAACGCGGTTCGTAAGTGGCTCCTTTGTTCTTTGAGACTTGTTTTTCCACTGACGAGTTTTCTCTTTTCTC
TCGTTTTGGTTTCTTGCACAGACTTGGATGTATCTCGCGATTCCAGTGGCTTTATATGCTTCTGAGCGATTGGTACGAGCCATCCGTGCGGGACTGTATACAGTTCGTGTAGTCAAGAGG
TCTGGCACGAAGCTTTTCTTTAGGATTTCGTTCATGGTTTTGATTGAGCAGTTTAACTACAGGCTGCTGTTTATCCTGGAAATGTCTTGGCTTTGTACATACAAAAGCCTCGCGGTTTTA
AGTACAAGAGTGGCATGTATCTCTTCCTCAAGTGCCCGGCCATCTCGCACCTTCAATGTGGTAAGTACTAGTAGTTCCTTGGCTTTTTTTTTTCTTTTCTTTAGTCAGCAAGCTTTGATC
TTTTCATCACAGGCATCCTTTTTCGATCACTTCTGCTCCAAGTGATGACTACTTGAGCATCCATATAAGAAGTGCCGGGGACTGGACCTCCAAAATGAAGAAAATCTTCTCAGAGAGGTA
CGTATGCTGCGATACATTTGAACTCCAACTCTGAAAGCCGTGTACAGGTTTGCCACAAACCCGAAGTTGGCAAAAGTGGCTTGCTCAGAGCTGAGTATGTGGATCATGATCTGGAGTTCC
AGTCACAACCAAGAGGTAGGAAAAATAGATTTAGAATTGTACAGAAAAGCTGTGTCTTTTTTTTTTCGTCTATTGCAGGTTTCCAAAGCTACGAATTGATGGTCCCTATGGTGCTCCAGC
ACAAGATTACATGAAGTATGATGTGCTGCTGCTCGTTGGTCTTGGCATTGGAGCAACACCTTTCGTAAGTATTCTGAGAGACATCTTGAATCACGTCAACAGGGATGTGGAAAAGTAAGT
TCTTCCAAGTTACTCAAGCTACAAACTCATTCTCATTTCGTTGGGATCGCAGAACAATGGGAAGAAGAGCGGTCCTACAAAAGTTTACTTCTACTGGGTGACTAGAGAGCAGGGATCTTT
CGAATGGTTTAAAGGTGTCATGAACGAGATTGCAGAGATGGATCACAAGAGGTCGGATTTTTCTCGCATTCTTTTGCTTAATAGTTTGCATGAACTTTGACGAGCAGAGAGTTATCGAGA
TGCACAACTATCTCACGAGTGTGTACGAGGAGGGCGACGCTCGATCGGCACTGATCACCATGATCCAGGCTTTGAACCTGGCCAAAAACGGAGTGGACATCTTGTCTGGAACTCGGGGGT
ACGTACGAAGATTTCTTCTAGTTCCTGTAGTTTCTAAAAACTTTCGCTCCTCTCCAGGTAAGAACACATTTTGCGAGACCAAACTGGAAGACGGTGTTTTCACGGCTCTCAGCAGTTCAC
AGGCATGCTAACATCGCGGTGAGTGATTAATTCTCAAGACAAAGCTTTGGTCTAGCATCTAGAAAAGAGAAAAGGAGCCATCACTCCCGTTTTCCACGTTTTGTTCCTTGCAGGCGTATT
TTACTGTGGTGCCCCAGCAGTGGCGAAAGAATTGGACACACTGTCGCGAGAGTACACGCACCAGAACTCAACCACCTTCGATTTTCACAAGGAAAACTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTCAACGACGATGGAGTTTCAGTGTCTAGCGATCGTCCTCTCCATCGCACCGAGTCCATTGCTTCGGGTGGAGGCGAGAAGAGATCCGCTGTGGTCACGGCCATCAAAGTTAAGACT
GCTTTCACTCGTCTCGCCAGCACTGTCAGGAATCACAACTCTCCAAAGGCCACCAAGTTTGATCGAGCGAAGCAAGCAAAGTTTTCCAGGACAAAGTCCAATGCCCTCCAGGGACTTCGT
TTCCTTACCGGGAAGAACAAGAAGAAAGTGTCGTGGCTCGACATCGAAAGGAGATTCACGGTGCTGGCAGTGGATGGAAGCCTTTCTCGTGAAAAATTCGGTGAATGCATAGGAATGGAG
ACCTCGGAATTTGCTCAAGCGCTCTTCGATGCGCTCGTCTCCAGCAAGAAACTCGAGAACCAGCAAAGCATTTCCAAGGAAGTTCTTCACGCCTTCTGGCTGCAAATGAGCGACGATAGC
TTCGACTCTCGTATGCAAATTTTCTTCCAGATGTTCGACAGAAACGCAGACGGACATATATCAGAAGAAGAAGTCAAAGAGATTATCATGCTTAGTGCGGCAACCAACAAGCTTGCCAAG
CTCAAGGCACAAGCCGACGAGTTTGCCGCGTTAATTATGGAAGAGTTGGATCCTGACAAGAATGGCTTCATTGAGCTTTCGCAGCTCGAAGCTTTGATGAGAGTTCCGGAGCCAGCGCAT
GCCAAAGACTCTTTCCTCAACTACAGCACAACCATCTCTCGGAATCTCGTCGGCGTCAAGCGGAAAAAGCACACTCCACTTCTCTCCTTTTGGAAAGATTCGAAGTTCTACCTCTCCGAG
AACTGGAGGTACCTCATGTTCTTCGGACTTTGGATTGCGACCATGGCGGGATTGTTCGCGTGGAAGTTTTTCGTGTACAAGCAGCGAGCAGCTTTTGAAGTCATGGGATATTGTCTGTGC
GTCGCAAAAGGTGCTGCCGAGACTCTCAAGCTCAACATGGCACTCGTGCTTTTCCCGGTCTGTAGAAACACCATCACCTGGTTTCGTTCGACCTTCGTCGGCAACATCGTTCCGTTCAAC
GACAACCTCAAGTTTCATATGATGATTGCGTCTGGTGTTGCAATTGGAACTGTGATTCACGCTGGAGTCCACTTGGCCTGCGACTTCCCGAGAATTACTAGCTCGTCTGACGAGCTCTTC
ATGCGCACCCTCGGCAAAAGTTTTCATTACAAGAGACAAACGTACGTTGATCTGCTCAAGTCAGTGGCTGGGGTTACTGGGATCGCGAGCGTGCTGCTCATGGCTTTTATATTCCTGCTA
GCGACGCCATGGTTCAGGCGAGGCCAGGTAAAGCCACTGTGGCCTTTGCACAGGCTAAGCGGATTCAACGCCTTTTGGTACTCGCACCATTTGTTTATCTTTGTCTACGTCCTGCTCATT
GTCCACTCGCTTTTCATTTATTTGGCACATGGATGGTGGCAGAAAACGACTTGGATGTATCTCGCGATTCCAGTGGCTTTATATGCTTCTGAGCGATTGGTACGAGCCATCCGTGCGGGA
CTGTATACAGTTCGTGTAGTCAAGGCTGCTGTTTATCCTGGAAATGTCTTGGCTTTGTACATACAAAAGCCTCGCGGTTTTAAGTACAAGAGTGGCATGTATCTCTTCCTCAAGTGCCCG
GCCATCTCGCACCTTCAATGGCATCCTTTTTCGATCACTTCTGCTCCAAGTGATGACTACTTGAGCATCCATATAAGAAGTGCCGGGGACTGGACCTCCAAAATGAAGAAAATCTTCTCA
GAGGTTTGCCACAAACCCGAAGTTGGCAAAAGTGGCTTGCTCAGAGCTGAGTATGTGGATCATGATCTGGAGTTCCAGTCACAACCAAGGTTTCCAAAGCTACGAATTGATGGTCCCTAT
GGTGCTCCAGCACAAGATTACATGAAGTATGATGTGCTGCTGCTCGTTGGTCTTGGCATTGGAGCAACACCTTTCGTAAGTATTCTGAGAGACATCTTGAATCACGTCAACAGGGATGTG
GAAAACAATGGGAAGAAGAGCGGTCCTACAAAAGTTTACTTCTACTGGGTGACTAGAGAGCAGGGATCTTTCGAATGGTTTAAAGGTGTCATGAACGAGATTGCAGAGATGGATCACAAG
AGAGTTATCGAGATGCACAACTATCTCACGAGTGTGTACGAGGAGGGCGACGCTCGATCGGCACTGATCACCATGATCCAGGCTTTGAACCTGGCCAAAAACGGAGTGGACATCTTGTCT
GGAACTCGGGTAAGAACACATTTTGCGAGACCAAACTGGAAGACGGTGTTTTCACGGCTCTCAGCAGTTCACAGGCATGCTAACATCGGCGTATTTTACTGTGGTGCCCCAGCAGTGGCG
AAAGAATTGGACACACTGTCGCGAGAGTACACGCACCAGAACTCAACCACCTTCGATTTTCACAAGGAAAACTTCTAA

Retrieve as FASTA