RedOxiBase: View Perox 7394

Entry information : SmRboh07-2_1 (SmRboh07b_1)

Entry ID	7394
Creation	0000-00-00 (Christophe Dunand)
Last sequence changes	2010-06-01 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-01-25 (Toky Ramarohetra (Scipio))

Peroxidase information: SmRboh07-2_1 (SmRboh07b_1)

Name (synonym)

SmRboh07-2_1 (SmRboh07b_1)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmRboh07-2_1 start..stop	S start..stop
SmRboh10-1_16	1742	0	1..845	1..845
SmRboh07-1_16	1246	0	174..845	1..695
SmRboh02-1_19	920	0	14..845	52..895
SmRboh02-2_137	915	0	14..845	59..902

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1753699..1754284	586	N° 2	1754580..1754739	160	N° 3	1754833..1754881	49	N° 4	1755127..1755459	333
N° 5	1755639..1756025	387	N° 6	1756093..1756188	96	N° 7	1756246..1756361	116	N° 8	1756410..1756512	103
N° 9	1756586..1756659	74	N° 10	1756712..1756871	160	N° 11	1756913..1757068	156	N° 12	1757115..1757243	129
N° 13	1757305..1757383	79	N° 14	1757444..1757553	110
join(1753699..1754284,1754580..1754739,1754833..1754881,1755127..1755459,1755639 ..1756025,1756093..1756188,1756246..1756361,1756410..1756512,1756586..1756659,17 56712..1756871,1756913..1757068,1757115..1757243,1757305..1757383,1757444..17575 53)

Literature and cross-references SmRboh07-2_1 (SmRboh07b_1)

DNA ref.	Phytozome 12: scaffold_1 (1753699..1757553)

Protein sequence: SmRboh07-2_1 (SmRboh07b_1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	845
PWM (Da):	96698.82	Transmb domain:	o319-341i370-392o428-450i475-497o507-524i657-674o
PI (pH):	9.31

Sequence 1178
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MEVCPKSPGDEDNVDESRMLELTIDVRNDNVRVRTVSALDDRCDDPQPSGRITLASLLRHTTQSGRFISKQISQELELIRNWAASTPRSRSRSRPSSPDRDPLVKILALSRSNSAVSSRSSASQQQPRIRKQQSGDLFLVRSRSGAETALQGLRYISRAIESADQKAVWEAVEMRFQQLAKPDGMLDRGDFGLCIGMPDSREFTGELFDALARRKHQNLQCINKEELYEFWLQLSDQSFDSRIQIFFDMCDKDADGRITEEEVKLWQLESLMLGQFASLAQDGYLNYSQTWSQTLAFEQSGKIILWARKIKYFVIENWQRVWVVGLWIFAMCGLFLWKFFTYKQTSAFKLLGYCLCSAKGAAETLKLNMALVLLPIIAGAIVAGVGIHATVHLACDFPRIIRASEEEFMIYLGRGFHYKQPTYVGILVSIEGVTGISMVIMMSIAFVLATRWFRRNLVRLPWPLHRLTGFNAFWYSHHLFMVVYVLLLLHSIFLFFTNDWVAKSTWMYLSVPVLLYSVERILSAFRARHFTVQVVKAAIHPGNVLALKMTKPPTFKYKSGMYLFIKCISISPFEWHPFSITSAPSDRHLSVHIRTVGDWTEELRRIFSALGGLAEKENVLESESSDISIIRHRFPKLQIDGPYGAPAQDYQKYDVLLLVGIGIGATPFISVLKDMLNQIKLADQQFLSMKQIRSPRKRNERKLQCPTNAYFYWVTREQGSFEWFRGVLNEVAEIDNKAVIEMHNYLTSVYEEGDARSALITMMQAFHHAKNGVDIVSGTRVRTHFARPKWYKVFSRLANIHTNSRIGVFYCGPMVLARELDALSSEFNQISNSKFEFHKENF

Retrieve as FASTA

Remarks

Complete sequence from genomic (13 introns). No EST. Probable splicing error => need to be verified.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCAACGACAATGTAAGGGTGAGGACCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCCCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCA
TCGGCATCGCAGCAGCAGCCGCGAATTCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGTGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCAGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGTGAGCAATTTCAA
TTCCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTCACAAGTTTCCATGATGGATAAAAGTTCTTGCATGAATGGATTGCCTCTATATGTTCTACATGTTTCTC
GTGGTCCATAGCGAGAATTTCTTGACACGTTTCCAAACTTTTGACATTGTTCTTCCCCATTTTGCGTTCTTCTCCTCCCAAGCTCACATAAAACTTTTCTTTTTCTTTTATCTGATTTCT
CGGCTGAAATCTCTCAAGCTTGCAATGGTTTTTTCTTCCAGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCAT
TAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATATGTAAGCGCATCACTCCCACTCTTCTCACGTTTTAAATAA
TCTCATTGCCCGCCACCTTCTTATCGTTTTCTATCTTGTTCTCCTATAATTTAGGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGGTGCGTGGAATTTAGCT
GATAGGCTCCACTTCTATCTTAAATACACTACTCTGTCTTTGGTTTTCGTCCCAGATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGC
GGCCCTCATCATGGAAGAGCTGGATCCCAACGGAATCGGCTACATTGAAGTAAGTTTCAAGTTTATAAAACCTTCACCACCTTTTCAATCTCTTCTTTGATTTGCTAGCTCTGGCAGCTC
GAGAGTTTGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAGG
AAGATCAAATACTTCGTCATCGAGAACTGGCAGCGCGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCACGTACAAGCAAACCTCGGCTTTC
AAGCTTCTCGGCTACTGCCTTTGTTCGGCCAAAGGAGCCGCCGAGACGCTCAAGCTCAACATGGCTTTGGTTCTCCTCCCGGTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATC
GTGGGAAGTGTTGTTCCATTCGATGACAATCTAAACTTCCACAAGGCAAGCGTTTAGAACTAAAGTTTCTGAGAACCAAATAGTGAAGTAGAAAGTTCGTGCTGTGGGTTCTAAGTTCCT
GGTGACTGATACGTTTGCAGATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGGATCATCCGGGCGAGCGAGGAAGAGTTTA
TGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATTGCGTTCGTGCTGG
CAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGC
TTCACTCCATCTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCAGTAAGCTGGTTACAGTTTGTTTTCCTAGCATGTTGTCCTAACAAAAGTATGAGTTTTGATCTGGTAGACATGG
ATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAGGTGAGAAGTTTCATTGGATTGTGGAAGTTG
CTGTTAAACTCTTTTGTGTATATGAAGGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGTGGCATGTATCTATTTATCAAATGT
ATATCCATCTCTCCTTTTGAATGGTAAGTTCAAGAAAACATTATTTTGGAAGCTATTTACATTGTTTTCAGGCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAGCGTG
CATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATCTTCTCCAAGGTAAGTAGAAAACACTTAGGATAGTATTGTTATTTTGCTTAGGTTTGTTCAAGAGATCTCTTTTGT
TTTTCAGGCACTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGGTACACTATTCAAAGGTTACTTATAACTTTTAAATTGCA
AGCTTTCTCTCAGATTCCCAAAGCTTCAAATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCA
TCAGCGTTCTCAAAGACATGCTAAACCAAATAAAACTGGCAGATCAACAACAGGTATTATATCTTCATACCTATTATTATTATTGTTTTGCCAGTTCTTGTCGATGAAGCAGATTCGAAG
CCCCAGGAAACGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGAT
TGACAACAAGGTGATGCCTGATCATGACAATATCACACTAAAATATATTCTTGCAGGCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATGCTCGCTCAGCTC
TCATCACAATGATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGAGTAAGATCTTTGATCTGATTTCATTTTGATTGCTTATAATAAATCTCTTACCAAT
ACTCAGGTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTTGCCAACATTCATACAAATTCAAGAATAGGTGAGTGAGATTTTCTCTTTTTCTTTTTTATTTTC
TTTCTTATTGCATTTGCTTATGAAGGTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAAATTTGAGTTTCAC
AAAGAAAATTTTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA