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Entry information : SmRboh07-1_16 (SmRboh07a_16)
Entry ID 7395
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh07-1_16 (SmRboh07a_16)
Name (synonym) SmRboh07-1_16 (SmRboh07a_16)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh07-1_16
start..stop		 S start..stop
SmRboh07-2_1 1244 0 1..695 174..845
SmRboh10-1_16 1242 0 1..695 174..845
SmRboh02-2_137 989 0 2..695 162..902
SmRboh02-1_19 988 0 2..695 155..895
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2193707..2193773 65 N° 2 2193220..2193379 158 N° 3 2193078..2193126 47 N° 4 2192892..2193005 112
N° 5 2192416..2192832 415 N° 6 2191934..2192320 385 N° 7 2191771..2191866 94 N° 8 2191597..2191712 114
N° 9 2191436..2191538 101 N° 10 2191125..2191247 121 N° 11 2190870..2191007 136 N° 12 2190694..2190822 127
N° 13 2190556..2190634 77 N° 14 2190386..2190495 108  
complement(join(2190386..2190495,2190556..2190634,2190694..2190822,2190870..2191 007,2191125..2191247,2191436..2191538,2191597..2191712,2191771..2191866,2191934. .2192320,2192416..2192832,2192892..2193005,2193078..2193126,2193220..2193379,219 3707..2193773))


exon

Literature and cross-references SmRboh07-1_16 (SmRboh07a_16)
DNA ref. Phytozome 12:   scaffold_16 (2193773..2190386)
mRNA ref. JGI transcript:   412003 [Incorrect prediction]
Protein sequence: SmRboh07-1_16 (SmRboh07a_16)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   695 (510)
PWM (Da):   %s   79758.16 (58220.7) Transmb domain:   %s   o184-206i318-340o368-390i529-546o
PI (pH):   %s   8.76 (6.03) Peptide Signal:   %s   cut: 22 range:22-531
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRFQQLAKPDGMLDRGDFGLCIGMPDSREFTGELFDALARRKHQNLQCINKEELYEFWLQLSDQSFDSRIQIFFDMCDKDADGRITEEEVKIIILSASANKLSKLNEQAEEYAALIMEELDPSGIGYIELWQLESLMLGQFA
SLAQDGYLNYSQTWSQTLAFEQSGKIILWARKIKYFVIENWQRVWVVGLWIFAMCGLFLWKFFAYKQTSAFKLLGYCLCSAKGAAETLKLNMALVLLPVCRNTITWLRSTIVGSVVPFDD
SLNFHKIIAGAIVAGVGIHATVHLACDFPRIIRASEEEFMIYLGRGFHYKQPTYVGILVSIEGVTGISMVIMMSIAFVLATRWFRRNLVRLPWPLHRLTGFNAFWYSHHLFMVVYVLLLL
HSIFLFLTNDWVAKSTWMYLSVPVLLYSVERILSAFRARHFTVQVVKAAIHPGNVLALKMTKPPTFKYKSGMYLFIKCISISPFEWHPFSITSAPSDRHLTVHIRTVGDWTEELRRIFSL
SLRFPKLLIDGPYGAPAQDYQKYDVLLLVGIGIGATPFISIRSPRKRSERKLQCPTNAYFYWVTREQGSFEWFRGVLNEVAEIDNKAVIEMHNYLTSVYEEGDARSALITMMQAFHHAKN
GVDIVSGTRVRTHFARPKWYKVFSKLANIHTNSRIGVFYCGPMVLARELDALSSEFNQISNSKFEFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic. No EST. Probable uncorrect prediction => need to be verified.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGTGAGCAATTCCAATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCACACACACACACACACACACACACACTCACAAATTTCCATGATGGATCAAAGTTCTTGCATGATTGGATTGCCTCTACATGTTCTACATGTTTCTCGTGGTCC
ATAGCAAGAATTTCTTGACACGTTTCCAAACTTTTGACATTGTTCTTCCCCATTTTGCGTTCTTCTCCTCCCAAGCTCACATAAAACTTTTCTTTTTCTTTTATCTGATTTCTCGGCTGA
AATCTCTCAAGCTTGCAATGGTTTTTTCTTCCAGGGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACA
AAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCGGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATATGTAAGCGCATCACTCCCACTCTTCTCACGTTTTAAATAATCTCA
TTGCCCGCCACCTTCTTATCGTTTTCTATCTTGTTCTCCTATAATTTAGGTGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGGTGCGTGGAATTTAGCTGAT
AGGTTCCACTTCTATCTTAAATACACTACTCTGTCTTTGGTTTTCGTCCCAGATATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGCG
GCCCTCATCATGGAAGAGCTGGATCCTAGCGGAATCGGCTACATTGAAGTAAGTTTCAAGTTTATAAAACCTTCACCACCTTTTCAATCTCTTCTTTGATTTGCTAGCTCTCTGGCAGCT
CGAGAGTTTGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAG
GAAGATCAAATACTTCGTCATCGAGAACTGGCAGCGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTT
CAAGCTTCTCGGCTACTGCCTTTGCTCGGCCAAAGGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTCCCGGTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGAT
CGTGGGAAGTGTTGTTCCATTCGATGACAGTCTAAACTTCCACAAGGCAAGCGTTTAGAACTAAAGTTTCTGAGAACCAAATAGTGAAGTAGAAAGTTCGTGCTGTGGGTTCTAAGTTCC
TGGTGACTGATACGTTTGCAGATATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGGATCATTCGGGCGAGCGAGGAAGAGT
TTATGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATCGCGTTCGTGC
TGGCAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGC
TGCTTCACTCCATCTTCTTATTTCTCACAAACGACTGGGTGGCGAAATCAGTAAGCTGGTTACAGTTTGTTTTCCCAGCATGCTGTCCTAACCAAAGTATGAGTTTTGATCTCGTAGACA
CATGGATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAGGTGAGAAGTCTCATTAGATTTGTGG
AAGTTGCTGTTAAACTCTTTCGTGTATATGAAGGCGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAAAGTGGCATGTATCTATTTA
TCAAATGTATATCCATCTCTCCTTTTGAATGGTAAGTTAAGGAAAACATTATTTTGGAAGCTATTTACTCTAGAGTTTATTGTTTTCAGGCGCATCCATTTTCTATTACCTCCGCTCCTA
GTGACAGGCATTTAACTGTGCATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATTTTCTCCAATGTAAGTAGAAAACACTTACGATAGTATTGTTATTTTGCTCAGGTTT
GTTCAAAACATCTCTTTTGTTTTCCAGGCACTTGAAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGGTACACTACTCCAAGGTTA
CTTTAAACTTTAAAATTGCAAGCTCTTTCTCTCAGATTCCCAAAGCTGCTAATCGATGGACCTTATGGAGCTCCAGCCCAAGATTATCAGAAATATGATGTTTTATTGCTCGTTGGAATT
GGAATTGGAGCAACGCCTTTCATCAGCGTTCTCAAAGACATGCAAACCAAATAAAAGTGGCAGATCAACAACAGGTATTATATCTTCATACCTATTATTATTTATATATTATTATTGTTT
TGCCAGTTCTTGTCGATGAAGCAGATATTCGAAGCCCCAGGAAACGAAGTGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGT
GGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAGGTGATGCCTGATCATGACAATACAACACTAAAATATTTTTCTTACAGGCGCAGTGATTGAGATGCATAACTATCTC
ACCAGCGTTTATGAAGAAGGCGATGCTCGCTCAGCTCTCATCACAATGATGCAAGCTTTTCATCACGCAAAGAATGGTGTTGACATTGTCTCGGGAACAAGAGTAAGATCTTTGATTTGA
TTTCATTTTGATTGCTTAATAAATCTCTTACTGATACTCAGGTGTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAAGCTTGCCAACATTCATACAAACTCAAGAAT
AGGTGAGTGAAATTTTCTCTTTTTCTTTTTTCTTTTCTTTCTTATTGCATTTGCTTATGAAGGTGTGTTTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGT
GAATTTAACCAAATATCCAACTCAAAATTTGAGTTTCACAAGGAAAATTTTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGG
AGGAAGCACCAAAACCTCCAGTGCATTAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCGGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATATGTGTGACAAGGAC
GCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGCGGCCCTCATCATGGAAGAG
CTGGATCCTAGCGGAATCGGCTACATTGAACTCTGGCAGCTCGAGAGTTTGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACT
CTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAGGAAGATCAAATACTTCGTCATCGAGAACTGGCAGCGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTT
TTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGCTTCTCGGCTACTGCCTTTGCTCGGCCAAAGGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTC
CCGGTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATCGTGGGAAGTGTTGTTCCATTCGATGACAGTCTAAACTTCCACAAGATAATTGCAGGAGCCATCGTTGCGGGGGTTGGA
ATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGGATCATTCGGGCGAGCGAGGAAGAGTTTATGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATC
TTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATCGCGTTCGTGCTGGCAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGG
TTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTCCATCTTCTTATTTCTCACAAACGACTGGGTGGCGAAATCAACATGG
ATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAGGCTGCTATTCATCCTGGAAATGTTCTTGCC
TTGAAGATGACAAAGCCACCTACGTTCAAGTATAAAAGTGGCATGTATCTATTTATCAAATGTATATCCATCTCTCCTTTTGAATGGCATCCATTTTCTATTACCTCCGCTCCTAGTGAC
AGGCATTTAACTGTGCATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATTTTCTCCAATCTTTCTCTCAGATTCCCAAAGCTGCTAATCGATGGACCTTATGGAGCTCCA
GCCCAAGATTATCAGAAATATGATGTTTTATTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCATCAGCATTCGAAGCCCCAGGAAACGAAGTGAAAGAAAGCTGCAATGTCCCACG
AATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAGGCAGTGATTGAGATGCATAACTATCTCACC
AGCGTTTATGAAGAAGGCGATGCTCGCTCAGCTCTCATCACAATGATGCAAGCTTTTCATCACGCAAAGAATGGTGTTGACATTGTCTCGGGAACAAGAGTTAGAACTCACTTTGCTCGA
CCCAAATGGTATAAAGTATTTTCCAAGCTTGCCAACATTCATACAAACTCAAGAATAGGTGTTTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTT
AACCAAATATCCAACTCAAAATTTGAGTTTCACAAGGAAAATTTTTAA

Retrieve as FASTA