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Entry information : SmGPx03-2_107 (SmGPx03b_107)
Entry ID 7406
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-02 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmGPx03-2_107 (SmGPx03b_107)
Name (synonym) SmGPx03-2_107 (SmGPx03b_107)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmGPx03-2_107
start..stop		 S start..stop
SmGPx03-1_40 495 0 1..245 1..245
ZaGPx04 288 1.96e-99 45..245 42..242
LuGPx140 288 2.91e-99 40..245 39..242
WnoGPx01 286 1.08e-98 51..245 50..241
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 189088..189375 286 N° 2 189430..189506 75 N° 3 189578..189639 60 N° 4 189693..189811 117
N° 5 189867..190034 166 N° 6 190091..190114 22  
join(189088..189375,189430..189506,189578..189639,189693..189811,189867..190034, 190091..190114)


exon

Literature and cross-references SmGPx03-2_107 (SmGPx03b_107)
DNA ref. Phytozome 12:   scaffold_107 (189088..190114)
mRNA ref. JGI transcript:   16028 [Incorrect prediction]
EST ref. GenBank:   FE516739.1
Cluster/Prediction ref. UniGene:   Smo.1088
Protein sequence: SmGPx03-2_107 (SmGPx03b_107)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   245
PWM (Da):   %s   26133.69  
PI (pH):   %s   10.12
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALVSVSLVPSSRGALVSTSATAVSGSRPRKVWLPHFPRAAASNPALVASKSSVFGRRLALGAVGAGVAAQIAWGAGKAFASTATKEKSIHDFTVKNIDGKDIDLSMYKGKVLLVVNIAS
QCGLTSGNYKELVEVHKKYKDGFEVLAFPCNQFGGQEPGTNEEIKQFACTRYKAEFPIFDVDVNGPSTAPVYQFLKSSKGGLLGDSIKWNFGKFLVNKDGQVVERYAPTTSPFQIEGDIK
KLL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns) and 24 ESTs. Incorrect prediction from JGI (5' and last exon are missing). Unigene compiles ESTs from both haplotypes.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCTTGTCTCGGTATCGCTCGTGCCCTCGTCGCGTGGAGCTCTCGTCTCCACATCGGCCACAGCTGTCTCTGGATCCAGGCCTCGCAAGGTTTGGCTCCCGCATTTCCCTCGAGCT
GCCGCCTCGAATCCGGCGCTGGTAGCGTCGAAATCGAGCGTGTTTGGGAGGAGATTGGCCCTTGGCGCTGTTGGAGCTGGCGTTGCAGCTCAGATTGCTTGGGGCGCGGGGAAGGCGTTT
GCTTCCACGGCGACCAAGGAGAAATCCATCCACGATTTCACTGTCAAGAGGTATGGACGGGTCGATTTGATGTTCGGGATTTTGATGATTTGGTAAGACATTAGAATATCGATGGGAAAG
ACATAGATTTGAGCATGTACAAGGGGAAAGTTCTACTCGTTGTCAACATTGCTTCTCAATGTGGTGTGTGCTATAAACGTTTGAAAGCATCGGTTTTGACAAGGTTTTCTTTCTTTTTCT
TATGATGTTTCCAGTGGATTGACTTCCGGGAACTATAAAGAATTGGTAGAGGTTCACAAGAAATACAAAGACCAAGAGGTAAGCTGTAAGCTACAAAATAAAACACTGCTCTTTCTTGTC
TCTTGTCTCAGGCTTTGAGGTTTTAGCATTTCCATGCAACCAGTTTGGTGGCCAGGAACCAGGAACTAATGAGGAAATCAAGCAGTTTGCGTGCACCAGATACAAGGCAGAGTTTCCAAT
CTTCGACAAGAGGTAACTGCTTAAAGCGTTTTTTTTCCCTTCTCTAAGTCGTTTTTTTGCGATGAAGGTGGATGTGAATGGGCCATCGACAGCTCCAGTTTATCAATTCCTCAAGAGCAG
CAAAGGCGGATTGCTGGGCGATAGCATCAAATGGAATTTCGGTAAATTTCTAGTGAACAAAGATGGGCAAGTTGTGGAAAGATATGCTCCCACCACTTCTCCCTTCCAGATCGAGAGGTA
AGAACTCTTCCTGATTTTTTTGTCTTTTCTCTCTAAACTATTGTCCTCCACAGGGCGACATTAAGAAGCTGCTATAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCTTGTCTCGGTATCGCTCGTGCCCTCGTCGCGTGGAGCTCTCGTCTCCACATCGGCCACAGCTGTCTCTGGATCCAGGCCTCGCAAGGTTTGGCTCCCGCATTTCCCTCGAGCT
GCCGCCTCGAATCCGGCGCTGGTAGCGTCGAAATCGAGCGTGTTTGGGAGGAGATTGGCCCTTGGCGCTGTTGGAGCTGGCGTTGCAGCTCAGATTGCTTGGGGCGCGGGGAAGGCGTTT
GCTTCCACGGCGACCAAGGAGAAATCCATCCACGATTTCACTGTCAAGAATATCGATGGGAAAGACATAGATTTGAGCATGTACAAGGGGAAAGTTCTACTCGTTGTCAACATTGCTTCT
CAATGTGGATTGACTTCCGGGAACTATAAAGAATTGGTAGAGGTTCACAAGAAATACAAAGACCAAGGCTTTGAGGTTTTAGCATTTCCATGCAACCAGTTTGGTGGCCAGGAACCAGGA
ACTAATGAGGAAATCAAGCAGTTTGCGTGCACCAGATACAAGGCAGAGTTTCCAATCTTCGACAAGGTGGATGTGAATGGGCCATCGACAGCTCCAGTTTATCAATTCCTCAAGAGCAGC
AAAGGCGGATTGCTGGGCGATAGCATCAAATGGAATTTCGGTAAATTTCTAGTGAACAAAGATGGGCAAGTTGTGGAAAGATATGCTCCCACCACTTCTCCCTTCCAGATCGAGGGCGAC
ATTAAGAAGCTGCTATAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCTCGATCCA TGGCGCTTGT CTCGGTATCG CTCGTGCCCT CGTCGCGTGG AGCTCTCGTC TCCACATCGG CCACAGCTGT CTCTGGATCC AGGCCTCGCA AGGTTTGGCT CCCGCATTTC  CCTCGAGCTG CCGCCTCGAA TCCGGCGCTG GTAGCGTCGA AATCGAGCGT GTTTGGGAGG AGATTGGCCC TTGGCGCTGT TGGAGCTGGC GTTGCAGCTC AGATTGCTTG GGGCGCGGGG  AAGGCGTTTG CTTCCACGGC GACCAAGGAG AAATCCATCC ACGATTTCAC TGTCAAGAAT ATCGATGGGA AAGACATAGA TTTGAGCATG TACAAGGGGA AAGTTCTACT CGTTGTCAAC  ATTGCTTCTC AATGTGGATT GACTTCCGGG AACTATAAAG AATTGGTAGA GGTTCACAAG AAATACAAAG ACCAAGGCTT TGAGGTTTTA GCATTTCCAT GCAACCAGTT TGGTGGCCAG  GAACCAGGAA CTAATGAGGA AATCAAGCAG TTTGCGTGCA CCAGATACAA GGCAGAGTTT CCAATCTTCG ACAAGGTGGA TGTGAATGGG CCATCGACAG CTCCAGTTTA TCAATTCCTC  AAGAGCAGCA AAGGCGGATT GCTGGGCGAT AGCATCAAAT GGAATTTCGG TAAATTTCTA GTGAACAAAG ATGGGCAAGT TGTGGAAAGA TATGCTCCCA CCACTTCTCC CTTCCAGATC 
GAGGGCGACA TTAAGAAGCT GCTATAAnAT TCTA 

Retrieve as FASTA