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Entry information : SmGPx04-1_19 (SmGPx04a_19)
Entry ID 7408
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-02 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmGPx04-1_19 (SmGPx04a_19)
Name (synonym) SmGPx04-1_19 (SmGPx04a_19)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2010]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmGPx04-1_19
start..stop		 S start..stop
SmGPx04-2_61 386 1.41e-139 1..196 1..196
SmGPx02-2_57 181 6.14e-59 18..172 8..166
LuGPx221 181 8.48e-59 19..172 13..169
SmGPx02-1_0 180 1.41e-58 18..172 8..166
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 304506..304583 76 N° 2 304640..304716 75 N° 3 304775..304836 60 N° 4 304910..305028 117
N° 5 305106..305264 157 N° 6 305315..305410 94  
join(304506..304583,304640..304716,304775..304836,304910..305028,305106..305264, 305315..305410)


exon

Literature and cross-references SmGPx04-1_19 (SmGPx04a_19)
DNA ref. Phytozome 12:   scaffold_19 (304506..305410)
mRNA ref. JGI transcript:   97488 [Incorrect prediction]
Protein sequence: SmGPx04-1_19 (SmGPx04a_19)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   196
PWM (Da):   %s   22484.38  
PI (pH):   %s   5.2
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGDEEIVNMREPAYTFASIYEIDVRDKHGQKVSMSKYRDKVLLIVNVATKSACASSMYKELNELHVKYVDGLEILAFPCNQFAAQEPLRTEYLQETVSSRFGPHFPLFEVDVNGPNTAV
LFRYLKDKSDGDRIRWNFTKFLINRTGGIAGRYAPHIPPYKLEEDIKSLLAVELPFEEEKRKNAAKEEEQEEEP*

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns). No EST. Incorrect prediction from JGI (no PS, last exon is missing)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGCGACGAAGAGATCGTGAACATGAGGGAGCCGGCCTATACTTTCGCCAGCATCTATGAGATCGATGTTAGGGGGTATGCTTCCTCCATCCAACTCGCGTTTGTTTTCATAGAT
CGATTGGTGATCACAGGACAAACACGGCCAAAAAGTTTCCATGAGTAAATACAGAGACAAGGTTCTTTTGATCGTCAATGTCGCCACAAAATCTCGTGTGTATCTCCTGTTCTCGATTGA
TTGCATTCTCCATTTCTCATATGATCCATCCAGGGCGTGTGCTTCAAGCATGTACAAGGAGCTCAACGAGCTCCACGTAAAATACGTGGACGAAGAGGTTCTTTTGATCTTGTGTTTCTT
TCTCTGGGATCCTCCAAACTATAGCTTCGATTGCAGTCGTGATTCGCCAGGGCTAGAGATTTTGGCATTCCCGTGCAACCAATTCGCTGCGCAAGAGCCACTCAGGACGGAATATCTTCA
AGAGACAGTCTCTTCTCGATTTGGGCCACACTTCCCACTCTTTGAAAGGGGGTACGAGAGATTTCTCACTGAGAATTGGATCCAATTCGAACACTTGATCGAGAATTTTGACGATGTTTG
ATCCACAGGTGGATGTAAATGGCCCAAACACCGCAGTTCTCTTCAGGTACCTCAAGGACAAGAGCGATGGCGATCGAATTCGCTGGAATTTCACAAAGTTTTTGATCAATCGAACTGGTG
GAATTGCTGGGAGATACGCCCCTCACATACCACCATACAAATTGGAGAGGTTGGCTCTTCCCATTCTAGCATTTCTTCATCAATTTTCTTTGACATCAGGAAGATATCAAGAGCCTCTTG
GCTGTGGAGCTCCCATTTGAGGAAGAAAAGAGAAAGAATGCCGCCAAGGAAGAAGAACAGGAGGAAGAACCCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGCGACGAAGAGATCGTGAACATGAGGGAGCCGGCCTATACTTTCGCCAGCATCTATGAGATCGATGTTAGGGACAAACACGGCCAAAAAGTTTCCATGAGTAAATACAGAGAC
AAGGTTCTTTTGATCGTCAATGTCGCCACAAAATCGGCGTGTGCTTCAAGCATGTACAAGGAGCTCAACGAGCTCCACGTAAAATACGTGGACGAAGGGCTAGAGATTTTGGCATTCCCG
TGCAACCAATTCGCTGCGCAAGAGCCACTCAGGACGGAATATCTTCAAGAGACAGTCTCTTCTCGATTTGGGCCACACTTCCCACTCTTTGAAAGGGTGGATGTAAATGGCCCAAACACC
GCAGTTCTCTTCAGGTACCTCAAGGACAAGAGCGATGGCGATCGAATTCGCTGGAATTTCACAAAGTTTTTGATCAATCGAACTGGTGGAATTGCTGGGAGATACGCCCCTCACATACCA
CCATACAAATTGGAGGAAGATATCAAGAGCCTCTTGGCTGTGGAGCTCCCATTTGAGGAAGAAAAGAGAAAGAATGCCGCCAAGGAAGAAGAACAGGAGGAAGAACCCTAA

Retrieve as FASTA