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Entry information : SbAPx03 (Sobic.006G021100.1 [2.1] / Sb06g001970 [1.4])
Entry ID 7415
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbAPx03 (Sobic.006G021100.1 [2.1] / Sb06g001970 [1.4])
Name (synonym) SbAPx03 (Sobic.006G021100.1 [2.1] / Sb06g001970 [1.4])
Class Ascorbate peroxidase    [Orthogroup: APx2005]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits No significant hits
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3609099..3609211 111 N° 2 3609311..3609435 123 N° 3 3609539..3609588 48 N° 4 3609679..3609744 64
N° 5 3609850..3609898 47 N° 6 3610172..3610254 81 N° 7 3610406..3610485 78 N° 8 3610606..3610708 101
N° 9 3611552..3611755 202  
join(3609099..3609211,3609311..3609435,3609539..3609588,3609679..3609744,3609850 ..3609898,3610172..3610254,3610406..3610485,3610606..3610708,3611552..3611755)


exon

Literature and cross-references SbAPx03 (Sobic.006G021100.1 [2.1] / Sb06g001970 [1.4])
DNA ref. Phytozome 12:   chromosome_6 (3609099..3611755)
Protein sequence: SbAPx03 (Sobic.006G021100.1 [2.1] / Sb06g001970 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   290 (297)
PWM (Da):   %s   31734.25 (32517.4) Transmb domain:   %s   o261-283i
PI (pH):   %s   7.18 (7.76) Peptide Signal:   %s   cut: 26 range:26-322
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSAPMVDADYMAEIERARRDLRALISSKNCAPIILRLAWHDAGTYDAKTNTGGPNGSIRLPQEYSHSSNAGLKIAIDLEPIKQKHTKITYADLYLTGVVAVEVTGGPTIDFVPGRKDSSACPEEGRLPDARKGASHLREVFYRMGLSDKDIVALSGG
HTGRAHPERTGFDGPWTKEPLKFDNSYFVELLKGDSEGLLKLPTDKVLVEDPEFRQYVELYADEEAFFRDYAESHKKLSELGFTPPRSSFTCKSGNKQKSLLVQAAAGVAVAAAVVALAY
LCESNKKFI*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 8 introns) and 15 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTGCACCCATGGTGGACGCCGATTACATGGCCGAGATCGAGAGGGCGCGGCGGGACCTCCGCGCCCTCATCTCCAGCAAGAACTGCGCGCCCATCATACTCCGCCTCGCGCGTACG
ACCTCATCACAAACATGTGTGGCGTGGTGTGGTCTGATTTGCTTGTAACATCTTCTTGCTGAACATCCAATGGCTTTTTTTTCTGATGTTGCAGATGGCATGACGCCGGCACTTACGACG
CCAAGACCAACACCGGAGGCCCCAACGGGTCCATAAGGCTCCCACAGGAGTACAGCCACTCTTCAAATGCAGGGCTCAAGATTGCCATTGACCTGCTAGAGGTCAGTTTTTTTCTAGCTC
CTAGTAGTGAACATATATTTGGAGTCAGATACATCAAGTGGATCAAGTCTTGATGACACCACACTTCTGCTTCCTCCTGCGCAGAGCCAATAAAACAGAAGCACACCAAGATCACATATG
CAGACCTGTATCAGAGGTACTACAGTCTACAGCTATGTCCCCATGGACTATTTATTTACTCAATTGATGCATACCATGGTTAATTGAATTGTGTTTCATCAACTAGCTCACCGGAGTTGT
CGCCGTCGAAGTTACTGGTGGACCAACCATTGATTTCGTTCCTGGCAGAAAGAGGTTAGTTAGTACTGTACAAGTGGCAACCTCAGATTCTATCATTACTGAGTATATATCATCTTGTCA
GAGCTTCTTATTCTAGCTTTTCATGTCTGTAATAACCAGGATTCGTCGGCTTGTCCAGAAGAAGGACGCTTGCCAGATGCTAGAAAAGAGGTTGCTTCGTAACACATCTTTAGAAGCTTC
TTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGATACACAGAATTGG
TACACACAAGAGAGTTTTCAGCATTACAACGTACCTTCGATGTTTATGGGACGGATGTTCCAAATTCAGCTCTTCTGCATTACTGAAAAACTTTCAATTCTTCTTGCTCTTATCTGTCAC
AAGGTGCTTCGCATCTTAGAGAAGTCTTCTACCGGATGGGTTTATCTGACAAGGACATTGTGGCACTCTCCGGCGGTCATACTCTGTGGTACACAAGAACATCTTTTCTTGTTCATGCAT
TATAGCAAGCATATTTTTTTTCTTAGAGAAGGGTTAACAAATATGAACATGGTCTCAATTAGATTAACGTGGTTTAGTTCCTTTTTATCTAAATTTGTGCCACACAATGCAAATTTCAGG
GAAGAGCACATCCAGAGAGGACAGGATTTGATGGCCCATGGACCAAGGAACCTCTGAAATTTGACAACTCTTATTTTGTGTGTAAGCCTTAAGCTGACTATTTCAAAAACCTAACACACG
ATTATTGCCTTTATTTTTTCTCAGATTATTATGGTTGGTAATGTCACACCTGTGTATATCACTTCACATCCAATGATGCAGTGAGCTTCTGAAAGGCGATTCTGAAGGGCTCTTGAAACT
CCCTACTGACAAGGTTCTTGTGGAAGATCCTGAATTCCGTCAGTACGTCGAACTATATGCCAAGAGGTACACAACTATTCAGTTACCTTCTTCCATTCTTGCTCGAACAGTTCCTGAAAC
CTTATAAAAAAAATACCTTATCAGAAAAAAATAATGGTTCTTGAAACAGAATTCATTGTTTTCATTTGATCTCGAATTGTCAATAAAACCTAAATCAGGTAGGCACTGACATTTTCTGCA
TTTTATTTTTATCATTTCTCCCTTCTGAATCATAGAACTATAATTACGTGCCAAAATAAAACTATAATAATCCAACTACAGAGTGAAGCTTCAGTGTTCGAATCAAGGCCAGCAGAAATC
GAGGGGCTGATTGGCTCTCTACCCAGCCTTGCCAATGCTTGCCTTATAAACTTTAGTTGCATCAACAAAATTTTCAAGCATTTAGTTTGTTAGCAAACTTAGTCAAGATTCATTATGTTC
AGTTCATTTCTGGCTAATATCTAGCCAAATCATTTGAGAACAAACTGGTGGACAATATATGGTAATGCCAACCTTTTGTATGGCTTGGTGAGCTAAAGTTGGTGTCAAACAAACAACTTA
GAAATCAATAGGCCTATAGCACATGTTGTGGTAGGTTTGGCCCTGGACGTGCTGCATCAGCAACCTAGTCAATACAGGATTAGTTGTTCCATGGTTTGTTCAGGTCTGCATCCAAGTAAC
TATCAATCTATCTGCTTAACAAACATGAATAAACTAGCAAACTTTGGAAAGCAGTCCATTGACTAGGCTGCTGACAGCATATCCAGGGCCAGAGCCGGGGCACTTGCCATAACCATAACA
CTCCTTTTATATAGTAGTTGAAATTAATCCTTGTTTGTCCACTAATCATTTTGCCTACCTTATTTGCAGGATGAAGAAGCTTTCTTTAGGGACTACGCGGAGTCACACAAGAAACTCTCA
GAGCTAGGCTTCACACCGCCTCGCTCTTCTTTCACATGCAAATCCGGAAATAAACAAAAGTCCCTGCTGGTGCAAGCTGCAGCTGGGGTCGCAGTTGCTGCTGCAGTTGTCGCATTGGCG
TACCTGTGCGAATCCAACAAGAAGTTCATCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTGCACCCATGGTGGACGCCGATTACATGGCCGAGATCGAGAGGGCGCGGCGGGACCTCCGCGCCCTCATCTCCAGCAAGAACTGCGCGCCCATCATACTCCGCCTCGCATGGCAT
GACGCCGGCACTTACGACGCCAAGACCAACACCGGAGGCCCCAACGGGTCCATAAGGCTCCCACAGGAGTACAGCCACTCTTCAAATGCAGGGCTCAAGATTGCCATTGACCTGCTAGAG
CCAATAAAACAGAAGCACACCAAGATCACATATGCAGACCTGTATCAGCTCACCGGAGTTGTCGCCGTCGAAGTTACTGGTGGACCAACCATTGATTTCGTTCCTGGCAGAAAGGATTCG
TCGGCTTGTCCAGAAGAAGGACGCTTGCCAGATGCTAGAAAAGGTGCTTCGCATCTTAGAGAAGTCTTCTACCGGATGGGTTTATCTGACAAGGACATTGTGGCACTCTCCGGCGGTCAT
ACTCTGGGAAGAGCACATCCAGAGAGGACAGGATTTGATGGCCCATGGACCAAGGAACCTCTGAAATTTGACAACTCTTATTTTGTTGAGCTTCTGAAAGGCGATTCTGAAGGGCTCTTG
AAACTCCCTACTGACAAGGTTCTTGTGGAAGATCCTGAATTCCGTCAGTACGTCGAACTATATGCCAAGGATGAAGAAGCTTTCTTTAGGGACTACGCGGAGTCACACAAGAAACTCTCA
GAGCTAGGCTTCACACCGCCTCGCTCTTCTTTCACATGCAAATCCGGAAATAAACAAAAGTCCCTGCTGGTGCAAGCTGCAGCTGGGGTCGCAGTTGCTGCTGCAGTTGTCGCATTGGCG
TACCTGTGCGAATCCAACAAGAAGTTCATCTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACCAAACCA GAGCTGCTGC TGCTGCCCTG TTTCTTGTCC ACAGCTGCTG CTGCTGCTTC ACTTCCTCTG CTTACACAGA GCAACCAGTT GTCAGCAGCA ATGTCTGCAC CCATGGTGGA  CGCCGATTAC ATGGCCGAGA TCGAGAGGGC GCGGCGGGAC CTCCGCGCCC TCATCTCCAG CAAGAACTGC GCGCCCATCA TACTCCGCCT CGCATGGCAT GACGCCGGCA CTTACGACGC  CAAGACCAAC ACCGGAGGCC CCAACGGGTC CATAAGGCTC CCACAGGAGT ACAGCCACTC TTCAAATGCA GGGCTCAAGA TTGCCATTGA CCTGCTAGAG CCAATAAAAC AGAAGCACAC  CAAGATCACA TATGCAGACC TGTATCAGCT CACCGGAGTT GTCGCCGTCG AAGTTACTGG TGGACCAACC ATTGATTTCG TTCCTGGCAG AAAGGATTCG TCGGCTTGTC CAGAAGAAGG  ACGCTTGCCA GATGCTAGAA AAGGTGCTTC GCATCTTAGA GAAGTCTTCT ACCGGATGGG TTTATCTGAC AAGGACATTG TGGCACTCTC CGGCGGTCAT ACTCTGGGAA GAGCACATCC  AGAGAGGACA GGATTTGATG GCCCATGGAC CAAGGAACCT CTGAAATTTG ACAACTCTTA TTTTGTTGAG CTTCTGAAAG GCGATTCTGA AGGGCTCTTG AAACTCCCTA CTGACAAGGT  TCTTGTGGAA GATCCTGAAT TCCGTCAGTA CGTCGAACTA TATGCCAAGG ATGAAGAAGC TTTCTTTAGG GACTACGCGG AGTCACACAA GAAACTCTCA GAGCTAGGCT TCACACCGCC  TCGCTCTTCT TTCACATGCA AATCCGGAAA TAAACAAAAG TCCCTGCTGG TGCAAGCTGC AGCTGGGGTC GCAGTTGCTG CTGCAGTTGT CGCATTGGCG TACCTGTGCG AATCCAACAA  GAAGTTCATC TAACTTATGC TCACCATTAG TACAGCAACA GTGGTGGAGG GTTGAAACTG GAGGAGTCGA AATATTTCAG TGCTGTCCAC TTGTATTTGC ACCATGTGGC TACTTATTGA 
TAATACCAAG CGTGTTATGT GTTGTGAAGA GGTCAAAGAA TGAAATAAAG ACAAATCTAA AAATAAGAGC AAAAAAAAAA AGCTCTGACT TGGTGCCCAA A 

Retrieve as FASTA