The peroxidases and oxidases database
Entry information : SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Entry ID 7417
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Name (synonym) SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Class Ascorbate peroxidase    [Orthogroup: APx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx06
start..stop		 S start..stop
SiAPx06 598 0 1..313 1..311
TaAPx03-1D 587 0 1..313 1..313
TaAPx03-1B 587 0 1..313 1..313
TaAPx03-1A 586 0 1..313 1..312
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6062793..6062876 84 N° 2 6062968..6063084 117 N° 3 6063519..6063639 121 N° 4 6063713..6063813 101
N° 5 6063919..6064006 88 N° 6 6065163..6065230 68 N° 7 6065316..6065402 87 N° 8 6065888..6065962 75
N° 9 6066038..6066115 78 N° 10 6066204..6066308 105 N° 11 6066395..6066412 18  
join(6062793..6062876,6062968..6063084,6063519..6063639,6063713..6063813,6063919 ..6064006,6065163..6065230,6065316..6065402,6065888..6065962,6066038..6066115,60 66204..6066308,6066395..6066412)


exon

Literature and cross-references SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
DNA ref. Phytozome 12:   chromosome_8 (6062793..6066412)
Protein sequence: SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313
PWM (Da):   %s   33935.42  
PI (pH):   %s   7.71
Sequence 576
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVHHLLRRGVSSGSPIHPLRGLFLASKELGRHPLSSAAAGDAAAELRSAREDVRQLLKATSCHPILVRLGWHDAGTYDKNIPEWPKCGGANGSLRFEVELKHGANAGLVNALKLIQSIKDKFSGVTYADLFQLASATAIEAGGPKIPMIYGRVDVTAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLNDEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTSQWLKFDNSYFKAIKERRDEDLLVLPTDAVLFEDSSFKIYAEKYATDQDAFFEDYAEAHAKLSNLGAKFDPPKGISLE*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 10 introns) and 9 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCTTCTCCGCCGCGGGGTCTCCAGCGGCTCACCGATCCACCCTCTCCGCGGCCTCTTCCTCGCCTCCAAGGTACCTGCGGCTCCTCCCCTCGCCCTTACCCACTGC
CCTCGCCGTCACACCGGTCCTTGATTTCGTGCGTGCTTCTTTCCCGGCGGCGCAGGAGCTTGGGCGGCACCCGTTGAGCTCGGCGGCGGCGGGAGACGCAGCGGCCGAGCTGAGGAGCGC
GCGGGAGGACGTCAGGCAGCTGCTCAAGGCAACCTCCTGCCATCCCATCCTGGTACGGTAGTTCTTTCTCCTCGTGCCGAGGCTCCCTGCGGTTGGAGCAGACAAGTGATTGTACTGTGG
GATCTTGTTTATTCATCTAGCCACCCAGAGATTCTGCATCTCTACAAAGTCTCTCTCATGTTTTCGTTCAATTGATGAAATAATAATACTCTGCAACCTTTTGTTTTGGGTAAGGAAGGA
ACTCGGTCGATTTAGTTGGCCATATTTTTACTCAGCTGACCACACATCAGTTTATGCAACAGAGTTAGCTTTGGGAGATGTATTAGTGCCCCAAATGCACTGTTCTTTCTGTTTATGCTA
GATTAATTTTGGTATTTTTGCTTGTGTGCACATTACTGTTTTCCTCTTCGCGAATCGCAATCCAGCATTAGCTGCTTCAGCCTCCGGGTTGCTTAGATACGACTTACGAGTTATATTTTT
GTTCAGGTTCGATTAGGTTGGCATGATGCTGGTACCTATGACAAGAACATTCCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAGTCGAGTTAAAACATGGGGCC
AATGCTGGTAAAGCTTCTTCTCAATCGATTAACTGTAACTTCATGATGAGGGGATACTCTTACATTTAGTTTCATAACAGGTCTTGTGAATGCTCTGAAGCTGATCCAATCGATCAAGGA
CAAGTTTTCAGGTGTTACGTATGCAGATCTGTTTCAGCTTGCCAGCGCCACAGCCATTGAGGTCCCTTAAAATTGCTCCAGCTTGCCAATGATTAGGTGATATTTATTCATAAATTGTTT
CTTGTTAATGACAACTGACTGGTTGTTCTGGTTTCTTTCATTTCAGGAAGCAGGTGGCCCCAAAATTCCGATGATCTATGGAAGGGTTGACGTTACTGCCCCTGAACAATGCCCACCAGA
GGGGAGGCTTCCTGGTCAGTAATAATGAATTTTTGACCGATCTTAACTCATATACCATAGTGCCAATTTATGTTGAGTCTGACTCAGAATCCAGAACCTAGAACATAGGGTTGTTCCTTG
AGTTTCATTTGATTGATGTTAATCCAAGCATACTCTTACAATCATTGCTTAGTGATTGAAACACCGAATCGGTATCTGATTCATTAACCTTTGTATGGTTGTGCTCAGAGTTCCACCACA
TAGCAAACTTTCAGCTAACTCCCCGATTAAAACATCGATACCTATCTCTTATCAAATCATTATCATATTTAAACCCATAGATGACTTGTATTTGCTTGCTTAGTTGTTCATGAAAGTTTG
GCATGTTAGCACACTGGCAGCTTTCAACAGATTAATATTACCAAAGTTTATGATCCATGTCACAGAAAATATACTTTGTCCTAGTCCTGGACATCATCCACTTTAAGCTGAGACACATCC
TATCAGATTTATGGTACCTAATGTTTATTTGTCTTCAAGGTGCAAATTTGGCACACCAAAAACTAAAATACAAACAAAATGCTGATGCAATATTGGAAGTAGAGGATGTAAATACAGCCC
TGGCTAACTTTAATGGTATCCCTTTTCATTCCACCAGTGTTTGTTGGGTTATCTGTAGTGCCTCCAAATTCAGCTTTTGAGATGCTTAGGACAGATTAATCTATATTCTTTTGGAATTTA
ATTAGTAAGATATGAAGGTAGAAACAAGCTAAAGTCATAGAACAGTGTTATGTGATCTGTAAAGCATAAGTCTTTTTAAAGAATTACCTTTGTGGGATTTACAGTCTGGTCAAATCAAAT
GGCTGAACATGCAGAGTGCACAGGGTAAATTGTTTCAAGTTCCCACATCCTACAATGTAACAAAATATTGAGAAGCTGCGCTACCTAGAATAGAATCATGTTCATACAGTTGTCTTATGG
TCATAGAATTCAAAATGACACTGCACATTATCTTCCTAAGCATTGCAATTTTCTTGTTTCAAACACCCCTATCCAGTGGTTCCTGATTGATCTCTTCATGCCATATAATTATTTAAGTTG
ACAGTTCAACACTATACTGCCAATGCTTTGTTTCTGTACAGAAGATTTTATTCCAAGGTTACTCATATTTCTATTTTCTCACCCATGCAGCTGCTGGCCCACCTTCACCTGCGGAACATT
TGCGTGAAGTATTCTACAGAATGGGCCTGAATGACAAGGTGTGAAGTGTGAACTGAATGCTGTGTTTAAATTAGACTCGGCATAATTCTATATTTGCTAGTTACAACTATTTCCGTTCTG
TAGGAAATTGTTGCACTGTCAGGAGCTCATACACTTGGACGGGCAAGACCAGAGCGTAGTGGCTGGGGTAAACCAGAAACAAAGTACACTGTATGTAACCTACAGATTTAATCATGTGCT
GTCCTTTTTTTCAGTTATTGCATTTGCATGCCTGTCCCTGTCCTTCATAATTTACTTATTATATTAGGGAGTAAAATGTGAGTGTAACCAGTATTTTTTATTCGTGCTAGACTGCTAGTT
AATTTCTTGTTTGGCTTTGTCCTACTGATTGGTCCTTGCTTATACATTTGCTGCATGGACACCATATTTGATTACTTGTCTGTGCTGTTATCTGATAAGACATTATTGTCTACTCTGCCC
GCTTTTCACTATATTGTGGTGTGTCTGCTAGCTTTCTCCTCTATGGATCTTATCTATATTCTCTCCACCATTATTCTTGTAAAGATGCTCTTTGTGTGATTAGTACACTAATAGCACCTT
CACATTTATACAGTCTTGTTTGCTGAATGGTGATGGAGTGGTGTTACCTCACTCATTTGTTAATTGTTCTTTTGTTTGATACTTTGATATGCCAGAAAGATGGACCTGGTGCACCTGGGG
GGCAATCTTGGACATCTCAATGGCTCAAGTTTGACAACAGCTATTTCAAGGTATTGTCCATAAGTTTGCCATAGGATACCTTTCAATCATGTAGCTTTAACAAAAATGTGGGCATAACAA
TTCAGGCTATCAAAGAAAGGCGAGATGAGGACCTCCTAGTTCTGCCTACTGACGCTGTGCTGTTTGAGGATTCCTCATTCAAGGTTAGTGAAGGTCCTCATGTTGCAAAAAACTGCACAT
ATCTAGCTTTTCTCTTGGACCAAGTCTCATGATGACTTTTCATACTTGAAGATCTATGCTGAGAAATACGCCACGGATCAGGATGCATTTTTCGAGGACTATGCTGAAGCTCATGCCAAA
TTAAGCAATCTTGGGGCAAAATTTGACCCGCCAAAGGTAAAAGGATTCATGACACTTTCCAGTCTTGAGAGGTGGTCAGGTACTCAGGTCATGTAACATGCTTTTCATTGAAATGTTTGC
AGGGCATCTCACTTGAGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCTTCTCCGCCGCGGGGTCTCCAGCGGCTCACCGATCCACCCTCTCCGCGGCCTCTTCCTCGCCTCCAAGGAGCTTGGGCGGCACCCGTTGAGCTCGGCGGCGGCG
GGAGACGCAGCGGCCGAGCTGAGGAGCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGGCAACCTCCTGCCATCCCATCCTGGTTCGATTAGGTTGGCATGATGCTGGTACCTATGACAAG
AACATTCCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAGTCGAGTTAAAACATGGGGCCAATGCTGGTCTTGTGAATGCTCTGAAGCTGATCCAATCGATCAAG
GACAAGTTTTCAGGTGTTACGTATGCAGATCTGTTTCAGCTTGCCAGCGCCACAGCCATTGAGGAAGCAGGTGGCCCCAAAATTCCGATGATCTATGGAAGGGTTGACGTTACTGCCCCT
GAACAATGCCCACCAGAGGGGAGGCTTCCTGCTGCTGGCCCACCTTCACCTGCGGAACATTTGCGTGAAGTATTCTACAGAATGGGCCTGAATGACAAGGAAATTGTTGCACTGTCAGGA
GCTCATACACTTGGACGGGCAAGACCAGAGCGTAGTGGCTGGGGTAAACCAGAAACAAAGTACACTAAAGATGGACCTGGTGCACCTGGGGGGCAATCTTGGACATCTCAATGGCTCAAG
TTTGACAACAGCTATTTCAAGGCTATCAAAGAAAGGCGAGATGAGGACCTCCTAGTTCTGCCTACTGACGCTGTGCTGTTTGAGGATTCCTCATTCAAGATCTATGCTGAGAAATACGCC
ACGGATCAGGATGCATTTTTCGAGGACTATGCTGAAGCTCATGCCAAATTAAGCAATCTTGGGGCAAAATTTGACCCGCCAAAGGGCATCTCACTTGAGTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCTACTGGAT TGCTATTGGT CCATGGTTCC ATTCCCTTCT CCAGCCTCCA CTGACGCGGA CCATTCTTCC TCTAAACCCC TCCTCTCCCC CGCCGCCGGT GCACCGACAT GGCCGTCCAC  CACCTTCTCC GCCGCGGGGT CTCCAGCGGC TCACCGATCC ACCCTCTCCG CGGCCTCTTC CTCGCCTCCA AGGAGCTTGG GCGGCACCCG TTGAGCTCGG CGGCGGCGGG AGACGCAGCG  GCCGAGCTGA GGAGCGCGCG GGAGGACGTC AGGCAGCTGC TCAAGGCAAC CTCCTGCCAT CCCATCCTGG TTCGATTAGG TTGGCATGAT GCTGGTACCT ATGACAAGAA CATTCCTGAG  TGGCCCAAGT GCGGTGGAGC TAATGGTAGC TTGAGATTTG AAGTCGAGTT AAAACATGGG GCCAATGCTG GTCTTGTGAA TGCTCTGAAG CTGATCCAAT CGATCAAGGA CAAGTTTTCA  GGTGTTACGT ATGCAGATCT GTTTCAGCTT GCCAGCGCCA CAGCCATTGA GGAAGCAGGT GGCCCCAAAA TTCCGATGAT CTATGGAAGG GTTGACGTTA CTGCCCCTGA ACAATGCCCA  CCAGAGGGGA GGCTTCCTGC TGCTGGCCCA CCTTCACCTG CGGAACATTT GCGTGAAGTA TTCTACAGAA TGGGCCTGAA TGACAAGGAA ATTGTTGCAC TGTCAGGAGC TCATACACTT  GGACGGGCAA GACCAGAGCG TAGTGGCTGG GGTAAACCAG AAACAAAGTA CACTAAAGAT GGACCTGGTG CACCTGGGGG GCAATCTTGG ACATCTCAAT GGCTCAAGTT TGACAACAGC  TATTTCAAGG CTATCAAAGA AAGGCGAGAT GAGGACCTCC TAGTTCTGCC TACTGACGCT GTGCTGTTTG AGGATTCCTC ATTCAAGATC TATGCTGAGA AATACGCCCC GGATCAGGAT  GCATTTTTCG AGGACTATGC TGAAGCTCAT GCCAAATTAA GCAATCTTGG GGCAAAATTT GACCCGCCAA AGGGCATCTC ACTTGAGTAG ATGTGGATGA AGGCGACTCG ACAGGGTCAT  GTTCCTTTGC ACGACCATTT TCGAAGGTTT TGCATGGAAA ACTTGTTCGA GTTCATTGAC GGCCCCAGAA GAAGGATTCA CTGATTAAAG GAAGATTTTT GTGCTGAGCA TGCTCTATTT  GAGTAGTATG CTACACTAGA ATAAAGAGGC ATCCGTCATT TCAGGATAAA TATTTGTCAC ACTAACCGAC GTTTACCTTG GTTGCATGGT ACTGCATTCA GCTTACCAAA TGAATGTTCC  CACCGAATTG AACCAAATTT TGTTCTTCCA TGTGTCCTGT TTGTCATTTA TGCTAGATTA CATGCGCAAA TCTTATGACA CTCAAATTTG AGTTTTATTG AGATGACATA TACTCTCTCC 
GTCCT 

Retrieve as FASTA