Entry information : SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Entry ID 7417
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Name (synonym) SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Class Ascorbate peroxidase    [Orthogroup: APx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx06
start..stop
S start..stop
SiAPx06 598 0 1..313 1..311
HvAPx05 586 0 1..313 1..312
TaAPx03 585 0 1..313 1..313
ZmAPx06 585 0 1..313 1..313
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6062793..6062876 84 N° 2 6062968..6063084 117 N° 3 6063519..6063639 121 N° 4 6063713..6063813 101
N° 5 6063919..6064006 88 N° 6 6065163..6065230 68 N° 7 6065316..6065402 87 N° 8 6065888..6065962 75
N° 9 6066038..6066115 78 N° 10 6066204..6066308 105 N° 11 6066395..6066412 18  
join(6062793..6062876,6062968..6063084,6063519..6063639,6063713..6063813,6063919 ..6064006,6065163..6065230,6065316..6065402,6065888..6065962,6066038..6066115,60 66204..6066308,6066395..6066412)


exon

Literature and cross-references SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
DNA ref. Phytozome 12:   chromosome_8 (6062793..6066412)
Protein sequence: SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313
PWM (Da):   %s   33935.42  
PI (pH):   %s   7.71
Sequence 354
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVHHLLRRGVSSGSPIHPLRGLFLASKELGRHPLSSAAAGDAAAELRSAREDVRQLLKATSCHPILVRLGWHDAGTYDKNIPEWPKCGGANGSLRFEVELKHGANAGLVNALKLIQSIKDKFSGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVTAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLNDKEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTSQWLKFDNSYFKAIKERRDEDLLVLPTDAVLFEDSSFKIYAEKYATDQDAFFEDYAEAHAKLSNLGAKFDPPKGISLE

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 10 introns) and 9 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCCGTCCACCACCTTCTCCGCCGCGGGGTCTCCAGCGGCTCACCGATCCACCCTCTCCGCGGCCTCTTCCTCGCCTCCAAGGTACCTGCGGCTCCTCCCCTCGCCCTTACCCACTGCC
CTCGCCGTCACACCGGTCCTTGATTTCGTGCGTGCTTCTTTCCCGGCGGCGCAGGAGCTTGGGCGGCACCCGTTGAGCTCGGCGGCGGCGGGAGACGCAGCGGCCGAGCTGAGGAGCGCG
CGGGAGGACGTCAGGCAGCTGCTCAAGGCAACCTCCTGCCATCCCATCCTG
GTACGGTAGTTCTTTCTCCTCGTGCCGAGGCTCCCTGCGGTTGGAGCAGACAAGTGATTGTACTGTGGG
ATCTTGTTTATTCATCTAGCCACCCAGAGATTCTGCATCTCTACAAAGTCTCTCTCATGTTTTCGTTCAATTGATGAAATAATAATACTCTGCAACCTTTTGTTTTGGGTAAGGAAGGAA
CTCGGTCGATTTAGTTGGCCATATTTTTACTCAGCTGACCACACATCAGTTTATGCAACAGAGTTAGCTTTGGGAGATGTATTAGTGCCCCAAATGCACTGTTCTTTCTGTTTATGCTAG
ATTAATTTTGGTATTTTTGCTTGTGTGCACATTACTGTTTTCCTCTTCGCGAATCGCAATCCAGCATTAGCTGCTTCAGCCTCCGGGTTGCTTAGATACGACTTACGAGTTATATTTTTG
TTCAGGTTCGATTAGGTTGGCATGATGCTGGTACCTATGACAAGAACATTCCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAGTCGAGTTAAAACATGGGGCCA
ATGCTG
GTAAAGCTTCTTCTCAATCGATTAACTGTAACTTCATGATGAGGGGATACTCTTACATTTAGTTTCATAACAGGTCTTGTGAATGCTCTGAAGCTGATCCAATCGATCAAGGAC
AAGTTTTCAGGTGTTACGTATGCAGATCTGTTTCAGCTTGCCAGCGCCACAGCCATTGAG
GTCCCTTAAAATTGCTCCAGCTTGCCAATGATTAGGTGATATTTATTCATAAATTGTTTC
TTGTTAATGACAACTGACTGGTTGTTCTGGTTTCTTTCATTTCAGGAAGCAGGTGGCCCCAAAATTCCGATGATCTATGGAAGGGTTGACGTTACTGCCCCTGAACAATGCCCACCAGAG
GGGAGGCTTCCTG
GTCAGTAATAATGAATTTTTGACCGATCTTAACTCATATACCATAGTGCCAATTTATGTTGAGTCTGACTCAGAATCCAGAACCTAGAACATAGGGTTGTTCCTTGA
GTTTCATTTGATTGATGTTAATCCAAGCATACTCTTACAATCATTGCTTAGTGATTGAAACACCGAATCGGTATCTGATTCATTAACCTTTGTATGGTTGTGCTCAGAGTTCCACCACAT
AGCAAACTTTCAGCTAACTCCCCGATTAAAACATCGATACCTATCTCTTATCAAATCATTATCATATTTAAACCCATAGATGACTTGTATTTGCTTGCTTAGTTGTTCATGAAAGTTTGG
CATGTTAGCACACTGGCAGCTTTCAACAGATTAATATTACCAAAGTTTATGATCCATGTCACAGAAAATATACTTTGTCCTAGTCCTGGACATCATCCACTTTAAGCTGAGACACATCCT
ATCAGATTTATGGTACCTAATGTTTATTTGTCTTCAAGGTGCAAATTTGGCACACCAAAAACTAAAATACAAACAAAATGCTGATGCAATATTGGAAGTAGAGGATGTAAATACAGCCCT
GGCTAACTTTAATGGTATCCCTTTTCATTCCACCAGTGTTTGTTGGGTTATCTGTAGTGCCTCCAAATTCAGCTTTTGAGATGCTTAGGACAGATTAATCTATATTCTTTTGGAATTTAA
TTAGTAAGATATGAAGGTAGAAACAAGCTAAAGTCATAGAACAGTGTTATGTGATCTGTAAAGCATAAGTCTTTTTAAAGAATTACCTTTGTGGGATTTACAGTCTGGTCAAATCAAATG
GCTGAACATGCAGAGTGCACAGGGTAAATTGTTTCAAGTTCCCACATCCTACAATGTAACAAAATATTGAGAAGCTGCGCTACCTAGAATAGAATCATGTTCATACAGTTGTCTTATGGT
CATAGAATTCAAAATGACACTGCACATTATCTTCCTAAGCATTGCAATTTTCTTGTTTCAAACACCCCTATCCAGTGGTTCCTGATTGATCTCTTCATGCCATATAATTATTTAAGTTGA
CAGTTCAACACTATACTGCCAATGCTTTGTTTCTGTACAGAAGATTTTATTCCAAGGTTACTCATATTTCTATTTTCTCACCCATGCAGCTGCTGGCCCACCTTCACCTGCGGAACATTT
GCGTGAAGTATTCTACAGAATGGGCCTGAATGACAAG
GTGTGAAGTGTGAACTGAATGCTGTGTTTAAATTAGACTCGGCATAATTCTATATTTGCTAGTTACAACTATTTCCGTTCTGT
AGGAAATTGTTGCACTGTCAGGAGCTCATACACTTGGACGGGCAAGACCAGAGCGTAGTGGCTGGGGTAAACCAGAAACAAAGTACACTGTATGTAACCTACAGATTTAATCATGTGCTG
TCCTTTTTTTCAGTTATTGCATTTGCATGCCTGTCCCTGTCCTTCATAATTTACTTATTATATTAGGGAGTAAAATGTGAGTGTAACCAGTATTTTTTATTCGTGCTAGACTGCTAGTTA
ATTTCTTGTTTGGCTTTGTCCTACTGATTGGTCCTTGCTTATACATTTGCTGCATGGACACCATATTTGATTACTTGTCTGTGCTGTTATCTGATAAGACATTATTGTCTACTCTGCCCG
CTTTTCACTATATTGTGGTGTGTCTGCTAGCTTTCTCCTCTATGGATCTTATCTATATTCTCTCCACCATTATTCTTGTAAAGATGCTCTTTGTGTGATTAGTACACTAATAGCACCTTC
ACATTTATACAGTCTTGTTTGCTGAATGGTGATGGAGTGGTGTTACCTCACTCATTTGTTAATTGTTCTTTTGTTTGATACTTTGATATGCCAGAAAGATGGACCTGGTGCACCTGGGGG
GCAATCTTGGACATCTCAATGGCTCAAGTTTGACAACAGCTATTTCAAG
GTATTGTCCATAAGTTTGCCATAGGATACCTTTCAATCATGTAGCTTTAACAAAAATGTGGGCATAACAAT
TCAGGCTATCAAAGAAAGGCGAGATGAGGACCTCCTAGTTCTGCCTACTGACGCTGTGCTGTTTGAGGATTCCTCATTCAAGGTTAGTGAAGGTCCTCATGTTGCAAAAAACTGCACATA
TCTAGCTTTTCTCTTGGACCAAGTCTCATGATGACTTTTCATACTTGAAGATCTATGCTGAGAAATACGCCACGGATCAGGATGCATTTTTCGAGGACTATGCTGAAGCTCATGCCAAAT
TAAGCAATCTTGGGGCAAAATTTGACCCGCCAAAG
GTAAAAGGATTCATGACACTTTCCAGTCTTGAGAGGTGGTCAGGTACTCAGGTCATGTAACATGCTTTTCATTGAAATGTTTGCA
GGGCATCTCACTTGAGTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCCGTCCACCACCTTCTCCGCCGCGGGGTCTCCAGCGGCTCACCGATCCACCCTCTCCGCGGCCTCTTCCTCGCCTCCAAGGAGCTTGGGCGGCACCCGTTGAGCTCGGCGGCGGCGG
GAGACGCAGCGGCCGAGCTGAGGAGCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGGCAACCTCCTGCCATCCCATCCTG
GTTCGATTAGGTTGGCATGATGCTGGTACCTATGACAAGA
ACATTCCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAGTCGAGTTAAAACATGGGGCCAATGCTG
GTCTTGTGAATGCTCTGAAGCTGATCCAATCGATCAAGG
ACAAGTTTTCAGGTGTTACGTATGCAGATCTGTTTCAGCTTGCCAGCGCCACAGCCATTGAG
GAAGCAGGTGGCCCCAAAATTCCGATGATCTATGGAAGGGTTGACGTTACTGCCCCTG
AACAATGCCCACCAGAGGGGAGGCTTCCTG
CTGCTGGCCCACCTTCACCTGCGGAACATTTGCGTGAAGTATTCTACAGAATGGGCCTGAATGACAAGGAAATTGTTGCACTGTCAGGAG
CTCATACACTTGGACGGGCAAGACCAGAGCGTAGTGGCTGGGGTAAACCAGAAACAAAGTACACT
AAAGATGGACCTGGTGCACCTGGGGGGCAATCTTGGACATCTCAATGGCTCAAGT
TTGACAACAGCTATTTCAAG
GCTATCAAAGAAAGGCGAGATGAGGACCTCCTAGTTCTGCCTACTGACGCTGTGCTGTTTGAGGATTCCTCATTCAAGATCTATGCTGAGAAATACGCCA
CGGATCAGGATGCATTTTTCGAGGACTATGCTGAAGCTCATGCCAAATTAAGCAATCTTGGGGCAAAATTTGACCCGCCAAAG
GGCATCTCACTTGAGTAG

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCTACTGGAT TGCTATTGGT CCATGGTTCC ATTCCCTTCT CCAGCCTCCA CTGACGCGGA CCATTCTTCC TCTAAACCCC TCCTCTCCCC CGCCGCCGGT GCACCGACAT GGCCGTCCAC  CACCTTCTCC GCCGCGGGGT CTCCAGCGGC TCACCGATCC ACCCTCTCCG CGGCCTCTTC CTCGCCTCCA AGGAGCTTGG GCGGCACCCG TTGAGCTCGG CGGCGGCGGG AGACGCAGCG  GCCGAGCTGA GGAGCGCGCG GGAGGACGTC AGGCAGCTGC TCAAGGCAAC CTCCTGCCAT CCCATCCTGG TTCGATTAGG TTGGCATGAT GCTGGTACCT ATGACAAGAA CATTCCTGAG  TGGCCCAAGT GCGGTGGAGC TAATGGTAGC TTGAGATTTG AAGTCGAGTT AAAACATGGG GCCAATGCTG GTCTTGTGAA TGCTCTGAAG CTGATCCAAT CGATCAAGGA CAAGTTTTCA  GGTGTTACGT ATGCAGATCT GTTTCAGCTT GCCAGCGCCA CAGCCATTGA GGAAGCAGGT GGCCCCAAAA TTCCGATGAT CTATGGAAGG GTTGACGTTA CTGCCCCTGA ACAATGCCCA  CCAGAGGGGA GGCTTCCTGC TGCTGGCCCA CCTTCACCTG CGGAACATTT GCGTGAAGTA TTCTACAGAA TGGGCCTGAA TGACAAGGAA ATTGTTGCAC TGTCAGGAGC TCATACACTT  GGACGGGCAA GACCAGAGCG TAGTGGCTGG GGTAAACCAG AAACAAAGTA CACTAAAGAT GGACCTGGTG CACCTGGGGG GCAATCTTGG ACATCTCAAT GGCTCAAGTT TGACAACAGC  TATTTCAAGG CTATCAAAGA AAGGCGAGAT GAGGACCTCC TAGTTCTGCC TACTGACGCT GTGCTGTTTG AGGATTCCTC ATTCAAGATC TATGCTGAGA AATACGCCCC GGATCAGGAT  GCATTTTTCG AGGACTATGC TGAAGCTCAT GCCAAATTAA GCAATCTTGG GGCAAAATTT GACCCGCCAA AGGGCATCTC ACTTGAGTAG ATGTGGATGA AGGCGACTCG ACAGGGTCAT  GTTCCTTTGC ACGACCATTT TCGAAGGTTT TGCATGGAAA ACTTGTTCGA GTTCATTGAC GGCCCCAGAA GAAGGATTCA CTGATTAAAG GAAGATTTTT GTGCTGAGCA TGCTCTATTT  GAGTAGTATG CTACACTAGA ATAAAGAGGC ATCCGTCATT TCAGGATAAA TATTTGTCAC ACTAACCGAC GTTTACCTTG GTTGCATGGT ACTGCATTCA GCTTACCAAA TGAATGTTCC  CACCGAATTG AACCAAATTT TGTTCTTCCA TGTGTCCTGT TTGTCATTTA TGCTAGATTA CATGCGCAAA TCTTATGACA CTCAAATTTG AGTTTTATTG AGATGACATA TACTCTCTCC 
GTCCT 

Retrieve as FASTA