Entry information : SbPrxII06 (Sobic.003G124300.1 [2.1] / Sb03g010530 [1.4] / SbPrxIIF)
Entry ID 7419
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrxII06 (Sobic.003G124300.1 [2.1] / Sb03g010530 [1.4] / SbPrxIIF)
Name (synonym) SbPrxII06 (Sobic.003G124300.1 [2.1] / Sb03g010530 [1.4] / SbPrxIIF)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrxII06
start..stop
S start..stop
ZmPrxII06 370 1.71e-133 1..193 1..193
OsPrxII06 319 6.2e-113 28..193 33..198
EgrPrxII02 309 4.4e-109 1..193 1..196
EguPrxII02 306 3.6e-108 1..193 1..196
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7419' 'complement(join(11360612..11360717,11361176..11361270,11362132..11362290,11363016..11363045,11363164..11363355))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11363164..11363355 190 N° 2 11363016..11363045 28 N° 3 11362132..11362290 157 N° 4 11361176..11361270 93
N° 5 11360612..11360717 104  
complement(join(11360612..11360717,11361176..11361270,11362132..11362290,1136301 6..11363045,11363164..11363355))


exon

Literature and cross-references SbPrxII06 (Sobic.003G124300.1 [2.1] / Sb03g010530 [1.4] / SbPrxIIF)
DNA ref. Phytozome 12:   chromosome_3 (11363355..11360612)
Protein sequence: SbPrxII06 (Sobic.003G124300.1 [2.1] / Sb03g010530 [1.4] / SbPrxIIF)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   193
PWM (Da):   %s   20570.67  
PI (pH):   %s   8.67
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPLARRAGRSAAAALWGAARGFASVGSDIVSAAPGVSLQKARSWDEGVATKFATTPLKDIFYGKKVVIFGLPGAYTGVCSQAHVPSYKKNIDKLKAKGIDSVICVAVNDPYVLNGWAE
KLEAKDA
IEFYGDFDGSFHKSLDLEIDLSAALLGRRSHRWSAFVDNGKIKSFNVEEVPSDFKVSSAEVILDQI

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 4 introns) and 4 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGCCGCTGGCGAGGAGGGCGGGGCGCTCCGCGGCGGCGGCGCTATGGGGCGCGGCTAGGGGCTTCGCGTCGGTGGGGTCCGACATCGTCTCGGCCGCGCCCGGCGTGTCGCTG
CAGAAGGCGCGGTCCTGGGACGAGGGCGTCGCCACCAAGTTCGCCACCACGCCTCTCAAGGACATCTTCTAC
GTGCGCAGCGCTGCTCTTCCCACATCGCCCATGTCTTCTTCTTCTTCT
AGATAGTCCATACCGGCCGATTCAGTTGTGTTGACCCGGGATTCTTTGCTTGCTGTCCTTTTGCTTGCAGGGGGGAAGAAGGTGGTCATCTTCGGCTTGCCCGTAAGTTCGCCTCCTCAC
TACTTCCATTCCGCTCTCCATGTAGATGTTTGGCCATTTTAGGGTCGCTAGATGAGGCCGTTGTTTGCATTGGTGCGGAATTATTTCGTTAGGTTTGCTAGGTCTGAATTTGCATTTGGG
GATTAGGGATGCCTCAGTAGAACGTTGTTTATGGGTGTTTAAACGTGATATTTGCAATGGCATGTATCCAATTAACCCTCTTTTTTATTGTTAAGACGTTGATTTGGTAAATAGACGTAA
GAATTGGGAATGGGAAGTTATGTTGTAATGTTGTTTCAGTGACCATGGTGAAATCTGAATGCTGTATCTTATATATTGGATGGTGTTTCTACAAACTAGAGGTGTTCATCTCTGATGCCT
AGGAGAAAACATTACATTTCATTCGTCTCATCTGATAGGGCAATAAGGATAGGTGTACTCCATGATACTCGAGGACAATGTTGTAAGAGCATAACACAGAATCCATGTTCCATTTTTCTA
AGCCATGAAAAAACATTGTGATTGTGACACATTACACCCTACTCCCAGAGTTTCTAGTCATTGTTGTTTCCTTGGCAATTCAGTACATTGGAATTTGTAAACTTACACCTTTGGTATTGT
TCTTTGTATTGTCTTTCTCCATCTTTTATTCTGAAAGGCAGAATTCTCTCACTTCAAATGTTCTAATGACCATATGGTTTGGCAACTATCTTTTCAATTTATTGCAGGGGGTGCATATAC
AGGGGTTTGTTCACAAGCACATGTTCCTAGTTACAAGAAGAATATTGACAAGTTGAAAGCAAAAGGAATCGACTCTGTTATCTGTGTAGCTGTGAATGATCCATATGTCCTGAATGGATG
GGCAGAAAAGCTAGAGGCCAAAGATGCA
GTAAGTAACTACCCTTCAATCTTTATTCTTTACTTGATTACCAAGTTATTAGCACATAATCTGAAATATAATGAGGGCATATAACGTATGTA
TCCAAGTAATTGTGCTATTATCAATGTGATATGACTATCTGCCTTTTGCTGTCCGGTGTTATTACTTGTTTGGTGTTCTCAACTACATAAATGTTTGTCATCATTATATTCCCATCATTT
GTTGCTATTGACAATTGTCCTATATGCAGTCAACCTGTGATGTTTTCCTTGTTCTCCCACCTGCCCTTGTTTAGTTCCAAATTTTTTTGCAAAATGGACATTGCAGCATTTTTGTTTGTA
TTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTAGCAAATTACAGGCAAACTGTGCAATTCGTTATTTTTTTATCTATATTTAATACTCCATGCATGTGCCG
CAAGATTCGATGTGACGGGGAATCTGAAAACCTAGCAAACCTAATGCAGCATTTTTGCAATTTTTTTTGGACCTAGCAAACCTAACGAAATAATTCAGATGTGGTGCTTTTTTTTATACT
TCTGCTGCACTCTGTTCACCTTGGTGCATTAAACTACAAAATGCAAATTTCATGTCATGTCTCGTAAAGCTCACCCCAATTTCTCTATACTGATGAATGATTGAATGATCTAATTTAGAT
ATAAAATTTATGGGAAACATGTTTCAGATGTATCATCTTAGGATCTTAGCCAAAAAAACCTGCAAATTTGAGTACGTGCAGTTGCTAGTTATTTGTAACTTTATATTAATTCCCTTGAGA
TCATATGCATATTCATATTTTTCCTATGTGCAATGATTGGAAAATATAGATATTGAGTTCTACGGTGACTTTGATGGGAGTTTCCACAAAAGCTTGGATTTGGAGATAGACCTTTCTGCT
GCTTTGCTTGGCCGCCGTTCTCACAG
GTTATTGGATTTAACTTGCAGTCATTCTTAAACTTGTGCCCTTATATTACAGTTGAAGATTGGTGTTATGTAGTTTAATACTGAATTACTGCCT
GATTAGTAAAGCTCTTCTGAGTTCTGACAAAATTGTCCTTGTTTAGTTGAATGTCTCTTTGGACACCTTTATGTAATTTATTTCCAGCCATGCCCTTGTCAGCTGAACCACATGCTATAG
CTGCATACAAAATTGTGAATGACCACCATATAGTGAAGTGTTGCTTTCATTCACTAGGTTCATAATACTATAGAGGACATCCCTGTCTAACATGATAACAACCGTTCTTAGAGTATCTTT
TACATTTCCCCATTAATAATCAAGGAAAGTATACTTCATTTCCAGTGCTCATGAGTAACAACAATACATCTTATGCTTGGTTTATGTCTTCTGGTCTAAATCTTGACAACATTGTCATTT
TTAGGTGTGGTCAGCCTTTGTTGACAATGGTAAGATCAAGTCTTTCAATGTTGAGGAAGTACCGTCCGACTTTAAGGTTTCTAGTGCAGAGGTGATCCTGGACCAGATCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGCCGCTGGCGAGGAGGGCGGGGCGCTCCGCGGCGGCGGCGCTATGGGGCGCGGCTAGGGGCTTCGCGTCGGTGGGGTCCGACATCGTCTCGGCCGCGCCCGGCGTGTCGCTG
CAGAAGGCGCGGTCCTGGGACGAGGGCGTCGCCACCAAGTTCGCCACCACGCCTCTCAAGGACATCTTCTAC
GGGAAGAAGGTGGTCATCTTCGGCTTGCCCGGTGCATATACAGGGGTT
TGTTCACAAGCACATGTTCCTAGTTACAAGAAGAATATTGACAAGTTGAAAGCAAAAGGAATCGACTCTGTTATCTGTGTAGCTGTGAATGATCCATATGTCCTGAATGGATGGGCAGAA
AAGCTAGAGGCCAAAGATGCA
ATTGAGTTCTACGGTGACTTTGATGGGAGTTTCCACAAAAGCTTGGATTTGGAGATAGACCTTTCTGCTGCTTTGCTTGGCCGCCGTTCTCACAGGTGG
TCAGCCTTTGTTGACAATGGTAAGATCAAGTCTTTCAATGTTGAGGAAGTACCGTCCGACTTTAAGGTTTCTAGTGCAGAGGTGATCCTGGACCAGATCTGA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATTTTCTAAC TCGACTATTG TGGGAGAGAG ACACAGAATC GGAAAAGGAA TCCATGGCGG CGCCGCTGGC GAGGAGGGCG GGGCGCTCCG CGGCGGCGGC GCTATGGGGC GCGGCTAGGG  GCTTCGCGTC GGTGGGGTCC GACATCGTCT CGGCCGCGCC CGGCGTGTCG CTGCAGAAGG CGCGGTCCTG GGACGAGGGC GTCGCCACCA AGTTCGCCAC CACGCCTCTC AAGGACATCT  TCTACGGGAA GAAGGTGGTC ATCTTCGGCT TGCCCGGTGC ATATACAGGG GTTTGTTCAC AAGCACATGT TCCTAGTTAC AAGAAGAATA TTGACAAGTT GAAAGCAAAA GGAATCGACT  CTGTTATCTG TGTAGCTGTG AATGATCCAT ATGTCCTGAA TGGATGGGCA GAAAAGCTAG AGGCCAAAGA TGCAATTGAG TTCTACGGTG ACTTTGATGG GAGTTTCCAC AAAAGCTTGG  ATTTGGAGAT AGACCTTTCT GCTGCTTTGC TTGGCCGCCG TTCTCACAGG TGGTCAGCCT TTGTTGACAA TGGTAAGATC AAGTCTTTCA ATGTTGAGGA AGTACCGTCC GACTTTAAGG  TTTCTAGTGC AGAGGTGATC CTGGACCAGA TCTGAGCTTG TCAATGAACT TGGGCTATCT ATCTTCAGTT TGTGGGGCAT ACTTCCTCTG CAGCTGCGAA TAAATTAAAT CTCTTACGAC 
CCGTGTAAGA TGTTTAGATA CACTGCGCCC AGACTAAGGA ATCAGAGTGT ATGACATCTG TTTTTCTGGA ATGAATTAAT CGGTGTTCA 

Retrieve as FASTA