Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
251 |
PWM (Da): |
25545.4 |
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PI (pH):
| 10.11 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MASAIASKVS AVGAVARREL APSVASKASV ASLVAARKAC LGTSQSLSSV SWVASRVGLK KPAARFVSSS SSSSSRSGAG QVVATISVGD KLPEAQLSYF DKDGNVQSVS VSELTKGKKV
VLFAVPGAFT PTCSSKHLPG FVAKADELRK AGVDTLACVS VNDAFVMQAW GKSAGVGDSV LMLSDGLAKF TQALGTAVDL TDKVEGLGIR SRRYSMLVED GVVKVLNLEV GGAFTNSSAE
EILSSLQKAN A
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Retrieve as FASTA
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Remarks |
Complete sequence from genomic (no intron) and 60 ESTs. Incorrect prediction from Phytozome (large 5'end is missing) confirmed by ESTs |
DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCGTCCG CAATTGCAAG CAAGGTCTCA GCAGTGGGAG CCGTGGCGAG GCGAGAATTG GCGCCGAGCG TGGCTTCCAA AGCCTCGGTT GCATCGCTCG TCGCCGCCAG GAAGGCTTGC
CTCGGCACCA GCCAGTCTCT GTCGAGCGTC TCATGGGTCG CGTCCCGCGT AGGGTTGAAG AAGCCCGCCG CTAGATTTGT nnnnnnnnnn nnnnnnnnnn nnnnCCGATC AGGGGCGGGG
CAAGTGGTGG CCACGATTTC CGTGTAA
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCGTCCG CAATTGCAAG CAAGGTCTCA GCAGTGGGAG CCGTGGCGAG GCGAGAATTG GCGCCGAGCG TGGCTTCCAA AGCCTCGGTT GCATCGCTCG TCGCCGCCAG GAAGGCTTGC
CTCGGCACCA GCCAGTCTCT GTCGAGCGTC TCATGGGTCG CGTCCCGCGT AGGGTTGAAG AAGCCCGCCG CTAGATTTGT nnnnnnnnnn nnnnnnnnnn nnnnCCGATC AGGGGCGGGG
CAAGTGGTGG CCACGATTTC CGTGTAA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
AGCCACCTTC AAGCCCTCTC CTTCAAACCC CGCCCCACCC TCCCGCTCCA CTACGCCTCA TCCTTGCTTA AGCCGCAGAC GATCGTGTTT TTTGTTGTGT TTTTATTCTC TGGGTCTTCA
TTCCCAACCG GAAATCATCA ACAATGGCGT CCGCAATTGC AAGCAAGGTC TCAGCAGTGG GAGCCGTGGC GAGGCGAGAA TTGGCGCCGA GCGTGGCTTC CAAAGCCTCG GTTGCATCGC
TCGTCGCCGC CAGGAAGGCT TGCCTCGGCA CCAGCCAGTC TCTGTCGAGC GTCTCATGGG TCGCGTCCCG CGTAGGGTTG AAGAAGCCCG CCGCTAGATT TGTGTCCTCG TCGTCGTCGT
CGTCGTCCCG ATCAGGGGCG GGGCAAGTGG TGGCCACGAT TTCCGTGGGG GACAAACTCC CCGAGGCGCA GCTCTCGTAT TTCGACAAGG ATGGCAATGT GCAGTCCGTG AGTGTGTCGG
AACTCACAAA AGGTAAGAAA GTGGTGCTCT TTGCTGTTCC TGGTGCCTTC ACCCCTACTT GCTCGTCCAA GCATTTGCCC GGGTTCGTGG CCAAGGCCGA CGAGCTCCGG AAGGCGGGCG
TGGACACCTT GGCTTGCGTC TCGGTGAACG ATGCCTTCGT GATGCAGGCG TGGGGGAAGA GCGCCGGCGT TGGCGACAGC GTGTTGATGC TGTCTGATGG TTTGGCCAAG TTTACCCAGG
CTTTGGGTAC AGCTGTTGAT TTGACTGATA AGGTAGAGGG GTTGGGCATT CGGTCGCGGA GATATTCCAT GCTTGTGGAG GACGGCGTAG TGAAGGTATT GAACTTGGAG GTGGGTGGCG
CCTTCACGAA CAGCAGTGCT GAGGAGATTT TGAGCAGTCT GCAGAAGGCC AATGCCTAAA ATGCAACTTT CATGCTTCGG TTTTCTGGGA GCTGCGTGCA TGCTTGGAAT TACACTGTTG
AGTCAGTTTG TAGACGTGTC AAACAGTGTT CGAGGGTTCA TGGCGTAGGG TAAGGCAGGT GCCTCCTGAT GTGAGTTAAG CGTGTTCGGT GCGTTGTACA TTCGGGAAAG AAACAGCGAA
GCAGGCTCGT GCGGATTGCT CCAGGCACGT AGGCATTAAT TACTCGCTGG ATTTTTGTAG TATCACAAAC AGGCACTTGC AGTAGTTCTG TTTATATCTG TTTTCCAGAA TGTATTTCGG
AGCTTAAGTC TATAATTGA
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Retrieve as FASTA
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