Entry information : Os2CysPrx[P]01(LOC_Os04g33970)
Entry ID 7450
Creation 2010-08-04 (Christophe Dunand)
Last sequence changes 2016-02-17 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2022-02-28 (Christophe Dunand)
Peroxidase information: Os2CysPrx[P]01(LOC_Os04g33970)
Name Os2CysPrx[P]01(LOC_Os04g33970)
Class Typical 2-Cysteine peroxiredoxin     [Orthogroup: 2CysPrx001]*
Taxonomy Viridiplantae (green plants); Streptophyta; Angiospermae; Monocotyledons
Organism Oryza sativa ssp japonica cv Nipponbare    [TaxId: 39947 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Os2CysPrx[P]01
start..stop
S start..stop
Zm2CysPrx01 339 2.13e-120 1..177 67..260
Zm2CysPrx02 339 2.63e-120 1..177 67..260
Sb2CysPrx 337 1.03e-119 1..177 67..260
Nt2CysPrx02-1A 336 4.4e-119 1..177 74..267
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7450' 'join(20582596..20582664,20583169..20583231,20583327..20583404,20585379..20585495,20585709..20585822)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 20582596..20582664 67 N° 2 20583169..20583231 61 N° 3 20583327..20583404 76 N° 4 20585379..20585495 115
N° 5 20585709..20585822 112  
join(20582596..20582664,20583169..20583231,20583327..20583404,20585379..20585495 ,20585709..20585822)


exon

Literature and cross-references Os2CysPrx[P]01(LOC_Os04g33970)
DNA ref. GenBank:   NC_008397.2 (20582596..20585822)
Protein sequence: Os2CysPrx[P]01(LOC_Os04g33970)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   177
PWM (Da):   %s   19603.98  
PI (pH):   %s   4.53
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
PLVGNKAPDFEAEAMFDQGFIKVGKKYVVLFFYPLDFTFVCPTDITAFSDRYEEFEKINTEVLGVSIDSVFSHLAWIQTDRKSGGLGDLISKSFGVLIPDQGIALRGLFIIDKEGVIQHS
TINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKDSKEYFASI

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic (chromo 4). First exon is missing. Incorrect prediction from Phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCGTTGGTCGGGAACAAGGCGCCGGACTTCGAGGCGGAGGCCATGTTCGACCAGGGGTTCATCAAGGTATATGGCGGTAATCCGGTAACCACATGCACAGCTACATTGCGCCACGCACGC
ACGCGCGGCAGTGTTATTCGACATAGGGGATTAATTGGCCCAGGAAAAAATGGGGCCTATTTGATTGGCAGTGTAATTCACCGTGAGATTTGATAATTTAACACTCTTTTCAATGGGTTT
CGATAAATTGACATCCTAGCCCACTTTCATTCACTCATATGGTCCCACATGTCATCCTCACAAATGTCAATTAAAGTAATTGGGCAACGAAAAAAGTGTGAAATTATCAAATTTTTTTTA
CATTCATCATAGGGGATTAATTGGCTTGGGCCAGGCCAAAAGAAAAAAAAAGTGGTCTATTCGATTGGTAGTCTAGATTAGATGTTAAGTCCATATCCACGGCTGTTTAATGTAGAAGCT
GTATGGTTGATCGTGCTTCCAATTGATATCTTCGTTGGTCGTGTCCTTCACTCCTTCTGTATATGCAGGTCAGGTCAAGCTGTCTGAGTATATTGGGGAAAAAATATGTGGTTCTGTTCT
TCTACCCCCTGGACTTCACGTTCGTCTGTCCAACAGAT
ATGCGTTGACCTTGTCGTGCTCTGTCATGGAAATGCCTTTTTTTTCAGTTTTTTTTCATTCCTAAAGTCTAAATGCATGTTT
GTAAGCTCTGCAGAGATCACTGCTTTCAGCGACAGATATGAGGAGTTTGAGAAGATAAATACTGAAGTTCTCGGTGTTTCGATTGACAGTGTGTGGTATGCTAACTTTTACCCGCATGAC
TTTAGATGTTGTTACGGTGTCGTTACCTGGTCTGTTGCTCTATTGAGAATTTCGTATTTCCATTCCATCTGGACATGTAGCTTTTCTCTTGACAATATTTGTGGTTTCTTGAATGCCTTA
AGGTTGTGATCAATATTTTAGCTTTCCTCTTTATGTGATCAATATTCTATTTGTTCTTAACGTCTGAATATAGAGCATTAGATGAACCCTTGCATTAGGCCATAAGTTTTAACATAAGAT
TGCCACGTGTTGAACTTTCATTCTGTATTATAATGAAATGTGTGGTGTTTGTTATGCCTTATGGAAATATTGAATGGAAGTAAAAACCGATGCTCTCTAATATTTAGACAATAGCGTTAT
AAACATTCAATTCAGTTATTTTGAAACAACTTTGAGAAATGAGACTGATGTAACGTCTTAATACTCTGGTTTGCTTCTGCCAAGGAGATTCATTGCATACTCAAATAATTATCACAAATT
ATATCCAGTAAAAGTATTGATTTTGCTACTATTACAGTGAGTAGTTTGTAGGCAGTAGTGGTACTGTAATTTATTTTTTACTATCCTCTCTTTCTGCTTCTGCATTAAGCATTTCATTTT
TTTTATCTTATAGGTATCATTCACTGTTACTCTGTCGACTATAAATATTTAATAAGTGGCCACAACCTATGCTTCATAAGTGTCGCATACTAATTTGGCTTTGAAATATCTTTTGTTTGC
AGTTTTCCCATCTTGCATGGATTCAGACAGATAGGAAATCCGGTGGTCTTGGTGATCTAAATACCAACTGATTTCCGATGTCACCAAATCAACTAGCATAGTGGCCCGCGCAGATTGCGC
GGCTAGCATCATTATATTTTTTTCTCTTATAATAGCATATATGTTTTCTCAATGTATTATTAAAATATATTAAAATAACAACATAATTTTGTGTGTGTTCATGAGAGCGAACTTCCAATA
TTCCTTTGAATTTTAGTTATTTGTAAATTGTATTTCTATATGTACTCTAAATTCTACTTTAATTTTATTAGTTTTATTCTGAATTTTAAATTCTTATATGGATTCTATACTCTTCTTCTA
ATATTCCTTATTTTAATTCCTAATTTATATTATTTGTAAATTTTATTTCTATATATGGATTCTAAACTTATCTTTCAATATTTTTTAATTCTTAATTTTAATTATTTTTAAATTATATTT
CTATATGGACTCTATATTCTTCATCCAATATATTTTTTTAATTTCGAATTTTTTATTTCTAAATTGTATTTCTAGATGGACTCTAACCTCTATATTTAATTTTTCTTATTTTTTAATTCC
GAATTTTCATTAGTTCTATTGCCCCTAATTTCTATTATTTCTAAATTGTATTTCTATATATGGATTCTAAACTTATCTTTCAATATTTTTTAATTCTGAATTTTAATTATTTTTAAATTA
TATTTCTATATGGACTCTATATTCTTCATCCAATATATATTTTTTTATTTCGAATTTTTTTATTTCTAAATTGTATTTCTAGATGGACTCTAACCTCTATATTTAATTTTTCTTATTTTT
TAATTCCGAATTTCCATTAGTTCTATTGTATACCGACATGGACTCTAGTCTTACCTTCCTATATTCCTTATTTTTAATTCCGAATTTCAGCTATTATTAAAATTGTATTTCTATATGGAC
TCTGTTTTTTCTTTTTCTTAGATTAATGTGAGAATTTCTAGACCATGAGAGCGAACGTGGAGGCTTCTTTTTCTATTCCTTTAATAATATAATAGATTTCAAAGTCTTTTGGTGTACTAA
TCCCTGATCAGGTATACTTCAGTTATGACTGCCTGTTGGCTATATATACAATATATGTCTTTCTTCTGGATATTTACTTGTTTGTATTCAAAGTCTTTTGTCATGTATTCCTTGTTCTTA
ATCTCATAAGAGCTCATACTTTCTGCTGTCAGGGGATTGCTCTGAGAGGATTATTCATCATTGACAAGGAGGGTGTGATTCAGCATTCTACCATTAACAACCTTGCTATTGGCCGTAGCG
TGGATGAGACGCTTAGGACCCTTCAG
AGGTAGAATAGCAAGATAATAAAATTGCATCTGCAAACATGCATTTCTTTTCAATATACATGGCATCTTGGCAGTTTTTTCGTCTTGAATTTAC
CATAGTCTAGTGTCTATAACATCAAAAATTGCTCAACTAGTTATAACTGTGAGTGACAAAGTCAGATAGGAAAATTTTTTGCAAATATGCAAGTTCGTAATTTGTTTTCCTATGGTGACA
GGCCCTACAGTATGTCCAAGAAAACCCGGATGAGGTTTGCCCAGCTGGATGGAAACCTGGGGAGAAGTCAATGAAGCCTGACCCCAAGGACAGCAAGGAGTACTTTGCTTCTATT

Retrieve as FASTA