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Entry information : GmAPx-R[P]-R (Glyma04g07090 / GmAPx[P]-R)
Entry ID 7454
Creation 2010-08-05 (Christophe Dunand)
Last sequence changes 2011-12-14 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2015-03-23 (Christophe Dunand)
Peroxidase information: GmAPx-R[P]-R (Glyma04g07090 / GmAPx[P]-R)
Name (synonym) GmAPx-R[P]-R (Glyma04g07090 / GmAPx[P]-R)
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx-R[P]-R
start..stop		 S start..stop
GmAPx-R 383 5.03e-136 1..220 82..314
LjAPx-R 342 1.01e-119 1..220 80..312
MtAPx-R 340 6.49e-119 2..220 84..315
VvAPx-R 317 1.49e-109 3..220 95..325
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7454' 'join(5505338..5505481,5505774..5505831,5505898..5505997,5506303..5506386,5506680..5506801,5507270..5507336,5508095..5508206)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5505338..5505481 142 N° 2 5505774..5505831 56 N° 3 5505898..5505997 98 N° 4 5506303..5506386 82
N° 5 5506680..5506801 120 N° 6 5507270..5507336 65 N° 7 5508095..5508206 110  
join(5505338..5505481,5505774..5505831,5505898..5505997,5506303..5506386,5506680 ..5506801,5507270..5507336,5508095..5508206)


exon

Literature and cross-references GmAPx-R[P]-R (Glyma04g07090 / GmAPx[P]-R)
DNA ref. Phytozome 12:   Gm04 (5505338..5508206)
Protein sequence: GmAPx-R[P]-R (Glyma04g07090 / GmAPx[P]-R)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   229
PWM (Da):   %s   24741.86  
PI (pH):   %s   5.11
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
RPGTKEYLLIKEEVRKVLSKGKAAGVLRLVFLDAGTFDIDDSTGIILLVLQQAKTQIDVIQPNILLSVSWADMNIAVAGAEAVEVCGGPPIQVSPGRLDTLVHDPEGRLPEESLNASGLK
KCFQSKGFLTQELVALSGAHTIGSKGFGSSISFENSYYKVLLEKPWTSGGMSSMIGLPSDHALVEDDECLRWIKKYADSENLFFEDFKNAYVKLVNSGVGGIAYKFR

Retrieve as FASTA  
Remarks Pseudogene from genomic (chromo 4). 2 first exons, fragments (xxx) and stop codon are missing. ORF predicted by Phytozome. No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGGCCAGGTACAAAGGAATATCTTCTCATTAAAGAAGAGGTGAGGAAGGTCTTGTCAAAGGGAAAGGCTGCTGGCGTGCTTCGATTGGTTTTCCTCGATGCCGGAACCTTTGACATCGAT
GACAGTACAGGTATAATACTTTTATATCTCATCTGAGGGACTCCAAGTTTCTGTTTTTTTTCAATTTTCACAGTCCTTCTGCCTTTCTAGCAAAAGCCAATGGAATTTGGCTCTCTTGTA
AAATGAAAGTAAATCAATTGTTTGAAATGGTTTGACATCATCACGGTTGAAAATCAGTAAAGGCATGCTCTGTCTCACTATTTTCTCGTTTCCCTTCTGTCACCTCTCTTTCTAGTACTA
TTTGAAGATCATTAAGACAAATATCTTACATTTTAACTGCCAGCTAATATCTCAGTGGACGTATCACATATTTTTTAGGTTCTGCAACAAGCAAAGACTCAGATAGATGTTATCCAACCA
AATATTCTTCTATCTGTGGTAACTGCTGCTAATGGTAAGCGATAATTTGGTCCAGACCAACAAATTTTTGCTTATCTTTATTAGTATCTTGGGCGGACATGAATATTGCTGTGGCTGGAG
CTGAAGCAGTTGAAGTATGTGGAGGTCCACCTATCCAAGTTTCACCGGGTAGATTAGATACATTTTGTAAGATGCTTGGTTTCTGGTTGACATGTTCTCGAGTTAGTACGTATGACGTGA
CAAGAAACTGGTTTTTCTTAACAGGATGACAAACAAGCAGTTATATGTTAGTTTTGGTGCATTAGGTTCTGTGAAAATGTTTTTTAACCAATTACTGAATTTTGTCCAATCTGTTGTTTA
ATGAATGATCAACCATTTTGCAGAGAAAAAAAAAAATCCTCCATGGGAACTTAACTCATTGGTTTTCGCATAACACATGAAATCTGGTTTTGTCTTCAGTCAGATGCTATTTGCATTCAT
TTTAATGATAGGGTGCATGATCCAGAAGGGAGACTTCCTGAGGAATCTCTCAATGCTTCTGGTTTGAAGAAATGTTTCCAGAGCAAAGGCTTTTTTTGTGAGTATGAGAACAACACCTAT
TTTATAGTTTAGACTAGTGCAGCTATACATCATCTAGAAGCTGTCTGATTGTCCATAACTTAACATGAGAATCTTAACATTACAGAAGCAAGAAATATTGTGATAAAGTCCCGATTCTAA
ACCAGACTAACAAGGCAAGAAATATTGTGATTTACTGACCAAAAAATCACTGGTAATAAGCTTATTAGTTATTGTTTAAAATTTTCAACGTATTTTACTTGAATTAGTTTTGCTTATGCA
TCCTTATCATTTGGAGCTTTTCTTTTATAGAACACAAGAACTTGTGGCTTTGTCTGGAGCCCACACTATTGGAAGTAAAGGTTTTGGAAGCTCAATTTCTTTTGAAAATTCATATTATAA
GGTTCTTTTGGAGAAGCCCTGGACGTCTTCAGAGGTAAGTTAACAGCTTATTTCATCTAAACATCGTTTTTATATTTTTTGTAAACTTGCTGCCAATCATTGTTTTCTGAAGCAGTTCTC
TTAGAACAAAAACAACAAGGAAATGAATACCAAAAAAAAAAAAAAAGGAAATGCAGGAGTTGAATGCATGTCACTATGTTAAGCTTAGCCACTAGATTATCACATAATTTATGTCCAGTC
TGCTCTGGATCTTAATGTTCCAATCAAGTTTTTCAGTTTCTTTGCCATCAGTTGTGCCTTCCAATAAACTACTATAAATGACATTAATATCTGGTATAGCGGCTCAAGTGGGTTAATGCA
TAGGCTTAGGGCCAAATCAACAACTCTACTCTGGTTGCATGCTCATTTTTCTGGATAGACCCAACATAATTATTGGTTTGTTTTTGTCTTTCTTTTTTTAATAATTTGTATAATTCTCAT
CTGCCGGTTCTCTTTTATGCAGGTGGTATGTCGAGTATGATTGGCCTTCCTTCAGATCACGCTCTTGTTGAGGATGATGAATGCTTAAGAGGTTCTTTATCTCTTTCTCTTATGCTACTC
TTGATATGAAATTGGCCCCCACTTTTTTTATTTATTGGCTAAGCTAGCACTAAAATTTTAGTACAAAAGTGGTAAATCCTTTAAATAATTTGAAGTTATCTGAACAGATAAAACAATTAA
AATACGAAGCATATCGTTTTCTTATTTTTCAGAATTCTATAAAATAACAGGTAACGCAAATAATCCATCAATTGGAAACAAGTAACAACTGCATATCGATTGGTAATGAATAAGTTATGT
TCGTTAGATTTGTCTGACACTATCATTTGTGATTCAACGTGTCTTGCCATAGTAAACCATGTCCTTGTTTCTGGAGTACTAGCTTACACTTTACACACAATAGTGAAACATCAATTTTTA
AACATTTAGGTCATGATCCTGAGCCTAACGCGTGCTCCTGTTCAAATGCTTGTATTATAGTTGTTTGTTGGTCTGAGGACTCATTTTGATTCTTTTTGTCCATGTAAGCAAACAATGACG
TGCTGAAAAGAATATTGTCTTTTTAAGTAAACTTGAGTCAGTATTGTCTATCAAAAACTCCCATCAATCATGTACTTTAGGAGGGGAAAAATTTAACAAAACTTTTTAGCTGGACCATTG
TATTATATCTTATTGATGTCTAAAAATTCAATTGCATGTTACATATCCCGGTGCACCGCATGTGCATGTTTCTGCTAATTATATGTTCCTTGGTGTGCATAACTTAAGAGAGTTCCATTG
ATTGAACAGATGGATTAAAAAATACGCAGACAGTGAGAATCTGTTCTTTGAAGATTTCAAAAATGCGTATGTCAAGCTGGTGAATTCTGGTGTGGGTGGAATAGCTTATAAATTCAGGAG
T

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGGCCAGGTACAAAGGAATATCTTCTCATTAAAGAAGAGGTGAGGAAGGTCTTGTCAAAGGGAAAGGCTGCTGGCGTGCTTCGATTGGTTTTCCTCGATGCCGGAACCTTTGACATCGAT
GACAGTACAGGTATAATACTTTTAGTTCTGCAACAAGCAAAGACTCAGATAGATGTTATCCAACCAAATATTCTTCTATCTGTATCTTGGGCGGACATGAATATTGCTGTGGCTGGAGCT
GAAGCAGTTGAAGTATGTGGAGGTCCACCTATCCAAGTTTCACCGGGTAGATTAGATACATTGGTGCATGATCCAGAAGGGAGACTTCCTGAGGAATCTCTCAATGCTTCTGGTTTGAAG
AAATGTTTCCAGAGCAAAGGCTTTTTAACACAAGAACTTGTGGCTTTGTCTGGAGCCCACACTATTGGAAGTAAAGGTTTTGGAAGCTCAATTTCTTTTGAAAATTCATATTATAAGGTT
CTTTTGGAGAAGCCCTGGACGTCTTCAGGTGGTATGTCGAGTATGATTGGCCTTCCTTCAGATCACGCTCTTGTTGAGGATGATGAATGCTTAAGATGGATTAAAAAATACGCAGACAGT
GAGAATCTGTTCTTTGAAGATTTCAAAAATGCGTATGTCAAGCTGGTGAATTCTGGTGTGGGTGGAATAGCTTATAAATTCAGGAGT

Retrieve as FASTA