Entry information : ToAPx-R
Entry ID 7455
Creation 2010-08-05 (Christophe Dunand)
Last sequence changes 2010-08-05 (Christophe Dunand)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-08-13 (Qiang Li)
Peroxidase information: ToAPx-R
Name ToAPx-R
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Taraxacum
Organism Taraxacum officinale (dandelion)    [TaxId: 50225 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ToAPx-R
start..stop
S start..stop
HaAPx-R 411 1e-145 2..292 3..284
VvAPx-R 338 6e-117 1..292 1..290
HargAPx-R 318 1e-110 105..291 1..186
LeAPx-R 318 5e-109 18..292 21..285
Literature and cross-references ToAPx-R
Literature Michelmore,R.W., Knapp,S., Rieseberg,L., Bradford,K., Kesseli,R., Boore,J., Kozik,A., Matvienko,M., Lavelle,D. and van Dijk,P. Dandelion ESTs from the Compositae Genome Project.
EST ref. GenBank:   DY820261.1 [5' end]
Protein sequence: ToAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   292
PWM (Da):   %s   31513.01  
PI (pH):   %s   7.53
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSMTGFDLSF RHLCSPYTPS RFEFPTQIRR KIHHGCTCTA IKPVLCSTSV SSTAVSDSRN ADENHVSTSY GRRMMISIIS FLLPLHVPIQ HSYANTPDDL LLLQEEIKKV LTKGKAAGVL  RLVFHDAGTY EINDNSGGMN GSICYELDRP ENKGLKKSLK ILLEAKKVVD ETQSVSVSDV IAVAGAEAVS LCGGPQIPVR IGRLDSMVPD PEGKLPEETL DAFGLKQSFK RKGFSTQELV 
ALSGAHTLGS KGFGDPFIFD NSYYxVLLEK PWSSSSGGMT SMVGLPSDRS LI 

Retrieve as FASTA  
Remarks Partial sequence from 2 ESTs (DY820261.1). Short 3' end is missing.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CACCGTCAGT TAAGATGTCC ATGACTGGAT TCGACCTATC GTTCCGGCAT CTCTGTTCTC CATACACCCC CTCGAGATTC GAATTTCCCA CTCAAATTCG CCGGAAAATT CACCATGGCT  GCACCTGCAC CGCTATTAAA CCCGTCCTTT GTTCAACATC CGTATCTTCG ACCGCCGTTT CTGATTCAAG GAATGCAGAT GAGAATCATG TTAGCACTTC ATATGGCAGG AGAATGATGA  TTTCTATAAT CTCATTTCTT TTGCCTCTTC ATGTACCAAT ACAACATTCT TATGCTAATA CTCCAGATGA TCTACTCTTA TTACAGGAAG AAATAAAAAA AGTATTGACC AAAGGCAAAG  CTGCTGGTGT CCTTCGTTTG GTATTTCATG ATGCAGGAAC TTACGAAATA AATGATAATT CAGGTGGAAT GAATGGCTCT ATATGTTATG AACTTGATAG ACCTGAAAAC AAAGGTCTAA  AAAAATCCTT AAAGATTCTT CTGGAAGCAA AAAAGGTGGT GGACGAGACA CAGTCAGTGT CAGTGTCTGA TGTGATTGCT GTTGCTGGTG CTGAAGCTGT GTCTTTATGT GGGGGCCCAC  AAATACCCGT TCGAATAGGG AGATTAGACT CCATGGTGCC TGATCCGGAG GGAAAGCTTC CGGAAGAAAC ATTGGATGCG TTTGGACTTA AACAAAGTTT CAAAAGAAAA GGTTTTTCGA  CTCAAGAACT TGTAGCATTA TCAGGGGCAC ATACTCTTGG AAGCAAGGGA TTTGGGGATC CATTTATTTT TGATAATTCA TATTACAnAG TGTTATTGGA GAAACCCTGG TCATCTTCTT 
CAGGGGGGAT GACAAGTATG GTTGGTCTTC CTTCAGACCG TTCTCTTATT C 

Retrieve as FASTA