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Entry information : BdiAPx-R (Bradi3g40330)
Entry ID 7459
Creation 2010-08-09 (Christophe Dunand)
Last sequence changes 2010-08-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-05-03 (Christophe Dunand)
Peroxidase information: BdiAPx-R (Bradi3g40330)
Name (synonym) BdiAPx-R (Bradi3g40330)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx-R
start..stop		 S start..stop
HvAPx-R 555 0 1..328 1..331
TaAPx-R01-1B 552 0 1..329 1..333
FarAPx-R 540 0 1..329 1..332
TaAPx-R01-1D 536 0 1..329 1..328
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 42505417..42505493 75 N° 2 42505587..42505699 111 N° 3 42506060..42506150 89 N° 4 42506424..42506551 126
N° 5 42506781..42506851 69 N° 6 42506981..42507023 41 N° 7 42507105..42507201 95 N° 8 42507335..42507418 82
N° 9 42507700..42507821 120 N° 10 42507911..42507971 59 N° 11 42508130..42508232 101  
join(42505417..42505493,42505587..42505699,42506060..42506150,42506424..42506551 ,42506781..42506851,42506981..42507023,42507105..42507201,42507335..42507418,425 07700..42507821,42507911..42507971,42508130..42508232)


exon

Literature and cross-references BdiAPx-R (Bradi3g40330)
DNA ref. Phytozome 12:   Bd3 (42505417..42508232)
Cluster/Prediction ref. UniGene:   Bdi.11061
Protein sequence: BdiAPx-R (Bradi3g40330)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (331)
PWM (Da):   %s   35331.87 (36267.4) Transmb domain:   %s   i7-29o
PI (pH):   %s   6.75 (8.21) Peptide Signal:   %s   cut: 32 range:32-362
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MELTNIPHLASSSNFFFSSCSRCSCRGRRTEKAVIAVSVAGIRCGADSACSEITEQQNLDSLGSKNSRCYRRRDFAAAALIPFLLPRVDMASAAESYDASIIQNGARNVLSKVKAAGVLRLVFHDAGTFDVAEKGGMNGSIIYEVDRPENAGLSKSLKILQKAKEGIDQIQVSWADLIAVAGAEAVALCGGPEIPVRLGRLDSSIADPVGKLPEETLDAVALKTSFRNKGFSTQEMVVLSGAHTIGGKGFGNPNVFDNSYFKVLLEKPRPTSGMPIG
LPTDWALTEDDECLRWINIYAEDQAKFFADFQDAYTKLVNSGASWRTA

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 10 introns) and 23 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCTCACCAACATCCCCCATCTCGCCTCCTCCTCCAACTTCTTCTTCTCCAGCTGCAGTCGCTGTTCCTGCAGAGGTAATGTTTTCGTCCATTATCAGGCTCTAATTCCAGCCATG
CAGTCATGAGTACATGGGATGCAAATCACCTGTGAAAATTGTGATGCTACAGGGGCAGAAGAACCGAGAAGGCGGTGATAGCAGTGTCTGTTGCTGGAATTAGGTGCGGTGCTGATTCTG
CATGTTCAGAAATCACTGAGCAGCAAAATCTAGATTCCCTTCCAGAGGTACGGCGCAGTAGATATGTTTTGTGCTTCAGTTAGAACATGAAATGTTTCCCGGCTAATTTCCTAGTAAATC
ATTCTGTAGTGTCAAGAGCAGTTAGAACAACTCTTAGGGAAGTCTGCACCTTGAAAATTATTGCTGATAAATAGTATACTTCCCACCAGGATTTCCAGAATTAAGGCTAGTAACTACAAT
TGGACATTTTTTCCATAAACTTGGTCGAACTTTACGAAAATTGAAATAAGACAAAGCTAGAACATCTTATAATTTGGAGCCGAGGGAGTAAGAATTAAGAAGTTTCTTCAAGTTTGTGCT
AGTATATTGCTGGCGAGTTGAATTTGCTTTGTGTACAATGGCCTCAGGTTCTAAAAATTCCCGCTGTTACAGAAGGAGAGACTTTGCTGCTGCTGCTCTGATCCCTTTTCTACTTCCTCG
TGTTGATATGGCAAGTGCGCGTAAGTACACTATTCGACCACTATCACTTTCCTACTTTGCACTTAGTTATAATAGCTATGAGTTCCTAACATTATTGACCTGCATTTACATGAGCATTTT
TGTCATGACTCATGATCGATTTGTTCGACTGTGCAAGCATGAACTATTAAAAAATGAAGTGGGCCTATGATAGAGATTTGCAGAGAAGAGTGACCTGATCAAAGTTGTTTCTTGCTATTA
AACACCAGTATTGAAACTTTAGAGAAGTTCCCTGATTACGATTAACTTTATAGGGCTGAGTCATATGATGCATCAATTATTCAAAATGGTGCGAGGAATGTTTTATCCAAGGTCAAAGCT
GCTGGCGTGCTTCGTTTGGTTTTCCATGATGCAGGGACTTTTGATGTTGCTGAAAAATCAGAGGTTTAGTCATGTTTGTCTTCAGCTACCAAAGTTTTCCCTAAACCAGCGACAATTCGG
ATGGGAGGGAGTAATAGTTTCTGAGCAAGGATTGCAGGTGTTTAAAAGCCTAATGATTTAAAATTGGGAAATCAAATATGCTAAAGTATGGTTCGAAGATATCGAACAGTGGATTTTTTG
CAAAGCAGAAAAAAATAGGCAAACATCGGTAATTGGTTGCACTATGTTGCAGGTGGCATGAATGGCTCTATAATTTATGAAGTTGACAGACCTGAAAATGCTGGACTAAGTAAATCTTTA
AAGAGGTTTTTTATTTTTCTGAAAGTACCTTTACAGCACATCTTTCTTCTTTGCTTGTTGTCATGTATAGTGCGATTTCCTACTGAGGAACACCTGACTTGACATGTCTGTTTGATCGCT
TTAAAACTGAATAGATACTGCAAAAAGCAAAAGAAGGAATCGATCAAATTCAGAAAGAGGTATGTTCTTTACACGTGTGTTGTCTTTATTGAACAAAGCTTTCTGTATCCTGAAGTCAAT
CTATTATTGTTCCGCTATAGTATCATGGGCAGACTTGATTGCGGTGGCTGGTGCCGAGGCAGTTGCACTCTGTGGAGGGCCTGAAATTCCAGTAAGACTAGGCCGATTAGATTCCAGAGG
TGCAACATAGTAGTTTCTTCATTTTACAATGTCCACAGAGTATTACTCAAACTTTAAGCTATTCCATGAGTTGTTTCTATTTACTCTACCTATCTGCCTGAATTCTTCTGAAAGAATGCT
TTTGCCGCGTAGCATTGCTGATCCTGTTGGCAAACTTCCTGAAGAAACATTGGATGCTGTTGCCTTGAAAACATCATTCAGAAACAAGGGTTTTTCTCGTGAGTCCTTTTATTTATTAAC
TTTCTTTATCGCTGTCCATTCTGGAATTGATATACTCCCTCCGTCCCATATTAAGTGACGAAATATAACATATATCTAGACATTTTTTTGAGTATAGATACATCCATATTTAGGCAAATT
TGAATCACTTAATATGGGACGGAGGGAGTACCAAGTTTAGCAATGGTTAACCAAAATTGTAAATTTGTATCGGTGTTTATGGTTGGCCAAAAGCACCTAGTGTCCACCCAAGACTGAAAT
TAAAATTGATACATGGCAGAACACAGGAGATGGTCGTTTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGAATCCAAATGTTTTTGACAACTCCTATTTCAAAGTACTCCTTG
AGAAGCCACGGCCCACTTCATATGTAAGTGATTGTGATATTATCATCACGCCCTTTAAATCCCTGTAAATCATATCTTGATGTAATGCACTGTGCTCTTTTTCTTTGTGAAGCCGGCATG
CCGATAGGGCTGCCCACAGATTGGGCACTCACTGAAGACGATGAGTGCTTAAGAGGTATTCTCTAGAAGCAGACGATCAGCTTTTCATAACATTCGATTGCCCATAGTGACGTTTAAAAA
TCTAGGCCAAATGGACTTTTAGCCTTTTTATTTGCATATTAAATTACATCAGTGTTCAGCTTACTGACATTGGAGATACCAAACTGCTTGCAGATGGATCAATATATATGCAGAGGACCA
GGCTAAATTTTTCGCCGATTTCCAAGATGCATACACCAAGCTTGTAAATAGCGGAGCCTCCTGGAGAACAGCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCTCACCAACATCCCCCATCTCGCCTCCTCCTCCAACTTCTTCTTCTCCAGCTGCAGTCGCTGTTCCTGCAGGGGCAGAAGAACCGAGAAGGCGGTGATAGCAGTGTCTGTTGCT
GGAATTAGGTGCGGTGCTGATTCTGCATGTTCAGAAATCACTGAGCAGCAAAATCTAGATTCCCTTCCAGGTTCTAAAAATTCCCGCTGTTACAGAAGGAGAGACTTTGCTGCTGCTGCT
CTGATCCCTTTTCTACTTCCTCGTGTTGATATGGCAAGTGCGGCTGAGTCATATGATGCATCAATTATTCAAAATGGTGCGAGGAATGTTTTATCCAAGGTCAAAGCTGCTGGCGTGCTT
CGTTTGGTTTTCCATGATGCAGGGACTTTTGATGTTGCTGAAAAATCAGGTGGCATGAATGGCTCTATAATTTATGAAGTTGACAGACCTGAAAATGCTGGACTAAGTAAATCTTTAAAG
ATACTGCAAAAAGCAAAAGAAGGAATCGATCAAATTCAGAAAGTATCATGGGCAGACTTGATTGCGGTGGCTGGTGCCGAGGCAGTTGCACTCTGTGGAGGGCCTGAAATTCCAGTAAGA
CTAGGCCGATTAGATTCCAGCATTGCTGATCCTGTTGGCAAACTTCCTGAAGAAACATTGGATGCTGTTGCCTTGAAAACATCATTCAGAAACAAGGGTTTTTCAACACAGGAGATGGTC
GTTTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGAATCCAAATGTTTTTGACAACTCCTATTTCAAAGTACTCCTTGAGAAGCCACGGCCCACTTCATCCGGCATGCCGATA
GGGCTGCCCACAGATTGGGCACTCACTGAAGACGATGAGTGCTTAAGATGGATCAATATATATGCAGAGGACCAGGCTAAATTTTTCGCCGATTTCCAAGATGCATACACCAAGCTTGTA
AATAGCGGAGCCTCCTGGAGAACAGCTTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACCACACAA GGGCATGGAT AGCAAGGTAC AGATTGGCTG ACTAGTGAGT TGTGTCTTTT TTCCTATTTC GTTTCAGTGC AGTAGAAGCC ATTACTGCAT TCAAACAAGG CAAGTAGGAA  GAAGGATGGA GCTCACCAAC ATCCCCCATC TCGCCTCCTC CTCCAACTTC TTCTTCTCCA GCTGCAGTCG CTGTTCCTGC AGGGGCAGAA GAACCGAGAA GGCGGTGATA GCAGTGTCTG  TTGCTGGAAT TAGGTGCGGT GCTGATTCTG CATGTTCAGA AATCACTGAG CAGCAAAATC TAGATTCCCT TCCAGGTTCT AAAAATTCCC GCTGTTACAG AAGGAGAGAC TTTGCTGCTG  CTGCTCTGAT CCCTTTTCTA CTTCCTCGTG TTGATATGGC AAGTGCGGCT GAGTCATATG ATGCATCAAT TATTCAAAAT GGTGCGAGGA ATGTTTTATC CAAGGTCAAA GCTGCTGGCG  TGCTTCGTTT GGTTTTCCAT GATGCAGGGA CTTTTGATGT TGCTGAAAAA TCAGGTGGCA TGAATGGCTC TATAATTTAT GAAGTTGACA GACCTGAAAA TGCTGGACTA AGTAAATCTT  TAAAGATACT GCAAAAAGCA AAAGAAGGAA TCGATCAAAT TCAGAAAGTA TCATGGGCAG ACTTGATTGC GGTGGCTGGT GCCGAGGCAG TTGCACTCTG TGGAGGGCCT GAAATTCCAG  TAAGACTAGG CCGATTAGAT TCCAGCATTG CTGATCCTGT TGGCAAACTT CCTGAAGAAA CATTGGATGC TGTTGCCTTG AAAACATCAT TCAGAAACAA GGGTTTTTCA ACACAGGAGA  TGGTCGTTTT ATCTGGAGCA CACACAATTG GAGGTAAAGG ATTCGGGAAT CCAAATGTTT TTGACAACTC CTATTTCAAA GTACTCCTTG AGAAGCCACG GCCCACTTCA TCCGGCATGC  CGATAGGGCT GCCCACAGAT TGGGCACTCA CTGAAGACGA TGAGTGCTTA AGATGGATCA ATATATATGC AGAGGACCAG GCTAAATTTT TCGCCGATTT CCAAGATGCA TACACCAAGC  TTGTAAATAG CGGAGCCTCC TGGAGAACAG CTTAATCAGA TTTACCATGT TTGTATAAGA TTCGGTCAAA AAAAATTGTC CACACCTTGG TGTTTGCGCA TTATTTACTG ATGAAGTGGC 
TCGTTTGGTA ATGGGAACTT ATATGAATCT TCAGAAAACA GAACATGCTC GTTTGGACTA ACAAACGGCT GAATAAAACT AAAAGCATCG AGTTTATTTT AC 

Retrieve as FASTA