View Redoxidase 7462

Entry information : AlyAPx-R

Entry ID	7462
Creation	2010-08-09 (Christophe Dunand)
Last sequence changes	2010-08-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyAPx-R

Name

AlyAPx-R

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyAPx-R start..stop	S start..stop
AhalAPx-R01	653	0	1..329	1..329
AtAPx-R	649	0	1..329	1..329
BstrAPx-R01	596	0	1..329	1..331
CrubAPx-R01	579	0	2..329	3..327

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3907929..3908112	182	N° 2	3907710..3907812	101	N° 3	3907474..3907589	114	N° 4	3906913..3906983	69
N° 5	3906703..3906745	41	N° 6	3906537..3906633	95	N° 7	3906360..3906443	82	N° 8	3906149..3906270	120
N° 9	3905932..3905998	65	N° 10	3905631..3905733	101
complement(join(3905631..3905733,3905932..3905998,3906149..3906270,3906360..3906 443,3906537..3906633,3906703..3906745,3906913..3906983,3907474..3907589,3907710. .3907812,3907929..3908112))

Literature and cross-references AlyAPx-R

DNA ref.	Phytozome 12: scaffold_7 (3908112..3905631)

Protein sequence: AlyAPx-R

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	329
PWM (Da):	35888.56
PI (pH):	9.02

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTTTTASLLKTCLFGCDSSSSFKFKCKFESPAKTRLLSPATGKHVVRSLRAWRIRCISDDPGSSHVFVSSRRKMVVLLSTVQLLSHLLPQNGNAAEIYPVMQNEIRKVVTKGKAAGVLRL
VFHDAGTFELDDHGGINGSIAYELERPENTGLKKPLVLAKAKIKVDEIQPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECFKRKGFSTQELVALSG
AHTIGSKGFGDPTVFDNAYYKILLQKPWTSSKMTSMVGLPSDHALVEDDECLRWVKRYAEDQDKFFEDFNNAYIKLVNSGAKWNKL

Retrieve as FASTA

Remarks

Complete sequence from genomic (9 introns)

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACGACGACGACTGCTTCTCTTTTGAAGACTTGTCTTTTTGGGTGCGACTCGTCTTCTTCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAAACGCGATTGCTCTCTCCGGCG
ACCGGGAAACATGTTGTCAGATCGTTAAGAGCCTGGCGTATTCGTTGTATCTCCGATGATCCTGGTAAGACCGGATTCTAGTATCATCGTCAATTCTACTCTATCGCTTTTCGTTTCCGT
CGATTTTCCCTGGTTTATTGAATTCGTGCTGAGATTGTTCTGTTTCTTTATAATTTATAGGTGTTCGAGTCATGTTTTCGTTTCCAGTAGAAGAAAAATGGTAGTCTTGTTGTCGACGGT
GCAACTTCTGTCTCATTTGCTTCCGCAAAACGGGAACGCAGCTGAGTGAGTTTTAAACAATCCTTAATTTTGTGTAATTCACTCTGAAATTTGGTAAATTGTTCAAGTTATAGTTTTCCC
AAATTTTTGTGTGCTAGTTATCCAAATTCATTGTTGGATTTTCAGGAGATTTATCCGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGTAAGGCTGCTGGTGTGCTTCGTTTA
GTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCATTCTGGTAAATTTCCATGACTCTATGTAATGATCAGAATTTTGCTTCAACTTTAGTATTCGACTCTTTTGTCAAGTTGCTAT
CTATTTCTACAAGTTGGATTGTTTCTTTCATTGTAAACTCATCATAGGTGAACATGGATATTAACTTTGAAAGTTCATTTATCAGTTGACTTGGTGATAGACAAGTTTGCTTATGTAAAC
ATTGTTTGTTAGATTATATTTAGAATGTGATTTCTGGATGTTTTGGGTAGCTTGTGAGTGTTTCTTGGCTTAGTTTAACAGACTGTCAAGTAGTCTGATCAGTGGCTCTCTCAGGATGTG
CTTATCATTTTACAAGTTGATATACCTCAGTTTTGGCTTTGATGAACCAAGCTTGGGTGGTTTAGATTCAGGTCTTTGCGATTTAGTATACTTCTGCTGGTGTTTTCCTTCGTTCTCATT
AAAAGATGCTACAACTATGTCTTAGTTCTTCTTGGTTATGACTTTAATTGCAGGTGTGGCATCAACGGGTCTATTGCTTATGAACTCGAGAGACCTGAAAACACAGGTTTGAAGAAACCC
TTAAAGGTACTAAATCCATCTCTTTTATTTCTGTTAGCATGAGCAAATAGAGATGTACTTTTCTCGTCTGTTTAACTGCTTTTTTTTTTGTGTCTATTTGCACTTGTTTCTCGGATTTGT
CAACTATGTTACTTTCAAAGAACTAATCTTCTTGTAGATGAATTCTTTGTTAGGTGTTCTAGCGAAAGCAAAGATTAAGGTTGATGAGATACAACCAGGTAATTGTTATTTGAAACGTGT
TCTGTTATGTGCCTTGGTGCCAGTGTTCTCATTCTATGTGATCTCAGTGTGTCTTGGGCGGATATGATCTCTGTCGCTGGATCTGAAGCAGTTTCAATATGTGGCGGCCCAACAATTCCA
GTAGTTTTGGGGAGACTTGATTCAGCGTAAGCACAACATAAACGGTTTTAGTCCTGATTCGATAGATCTCTGGTCACTGTTTCTATACTTCCAACAGGATGATTGTTTCATGTTTACAGG
CGCAACCTGATCCAGAAGGCAAGCTACCTCCAGAAACCCTGAGTGCCTCGGGCTTGAAAGAATGCTTCAAAAGAAAAGGATTTTCGTGAGTCCTTAGCTGAGAATTGTTTCAACATGTTT
TTATTATATCAACATTTTGTAATTTGACATCACTGGGTTTATGTGCCAATGCAGGAGACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGATCCG
ACAGTGTTTGATAATGCATACTACAAAATCCTTCTTCAAAAACCATGGACATCAACTTGTAAGTCTCATGACATGATTCTCATGTTCTTTTACGCATACAGTTTCAGTTTCTAACCATTG
CTCCCAATGTTTTAGCATCTAGCACGTTCTGAAGATTGACTGTAAGACTGAGATTATATATTTGCATAATTTTCTTCTTATGATGCAGCCCCAAAATGACCAGCATGGTCGGGCTTCCTT
CGGATCATGCCTTAGTGGAGGATGATGAGTGCTTAAGGTTTCAGAAAGTTCTTACCTTATCATTTCATATGTAATTTTCTCTTAATTACCAGTTAAAGTAGAGTAGAGTAATGTGCTGAA
CACTTGGACTATAGGCTCATGGATAAAAGTGGAAACTGTTGAACACTAATCTTGTCGTTTGAGCGATCTGGAAAACTATACAACTGATATAGATGTGTGGGTTGATGATTCACAGGTGTG
GGTGAAACGATATGCAGAAGACCAAGACAAGTTCTTCGAAGACTTCAACAATGCTTATATCAAACTAGTTAATTCAGGGGCCAAATGGAATAAGTTATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA