The peroxidases and oxidases database
Entry information : AlyPrxII05 (AlyPrxIIE)
Entry ID 7474
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrxII05 (AlyPrxIIE)
Name (synonym) AlyPrxII05 (AlyPrxIIE)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrxII05
start..stop		 S start..stop
AtPrxII05 446 7e-162 1..231 1..234
ThasPrxII02 343 3e-121 19..231 22..232
LuPrxII02 289 3e-100 1..231 1..230
CclPrxII04 285 1e-98 1..231 1..232
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16379531..16380226 696  
join(16379531..16380226)


exon

Literature and cross-references AlyPrxII05 (AlyPrxIIE)
DNA ref. Phytozome 12:   scaffold_5 (16379531..16380226)
Protein sequence: AlyPrxII05 (AlyPrxIIE)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   231
PWM (Da):   %s   24315.67  
PI (pH):   %s   9.18
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATSLSVSRF ISSSSAIAKP LLSPTVSFTA PLSFTRSLAP DLSLKFRNRR TNSFSATTRS FATTPVTASI SVGDKLPDST LSYLDPSTGD VKTVTVSSLT AGKKTILFAV PGAFTPTCSQ 
KHVPGFVSKA GELRSKGIDV IACISVNDAF VMEAWRKDLG INDEVMLLSD GNGEFTGKLG VELDLRDKPV GLGVRSRRYA ILADDGVVKV LNLEEGGAFT NSSAEDMLKA L 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, no intron).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACTT CTCTCTCCGT TTCTAGATTC ATCTCCTCCT CCTCCGCCAT CGCTAAGCCG TTACTATCCC CCACCGTCTC CTTCACCGCG CCGCTCTCCT TCACACGCTC TCTCGCTCCT  GATCTCTCCC TCAAATTCCG CAACCGCCGC ACCAATTCCT TCTCCGCCAC CACCAGATCC TTCGCCACAA CACCCGTCAC CGCCTCCATA TCCGTCGGAG ACAAACTCCC AGACTCCACC  CTCTCCTACC TCGATCCATC CACCGGAGAC GTCAAAACAG TAACCGTCTC ATCCCTAACC GCCGGAAAGA AAACAATCCT ATTCGCCGTA CCCGGAGCAT TCACACCAAC CTGCTCACAA  AAACACGTCC CTGGATTCGT ATCTAAAGCT GGAGAACTCA GATCTAAAGG CATCGATGTA ATCGCATGTA TCTCCGTCAA CGACGCGTTT GTCATGGAAG CGTGGAGGAA AGATCTGGGA  ATCAACGATG AGGTAATGTT GCTTTCCGAT GGTAACGGTG AATTCACAGG GAAGCTTGGA GTTGAATTGG ATTTGAGGGA TAAGCCTGTA GGACTTGGAG TTAGGTCAAG AAGATATGCG 
ATATTGGCTG ATGATGGTGT TGTGAAAGTT CTGAATCTTG AAGAAGGAGG TGCTTTTACT AATAGTAGTG CTGAGGATAT GCTTAAAGCT CTCTGA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACTT CTCTCTCCGT TTCTAGATTC ATCTCCTCCT CCTCCGCCAT CGCTAAGCCG TTACTATCCC CCACCGTCTC CTTCACCGCG CCGCTCTCCT TCACACGCTC TCTCGCTCCT  GATCTCTCCC TCAAATTCCG CAACCGCCGC ACCAATTCCT TCTCCGCCAC CACCAGATCC TTCGCCACAA CACCCGTCAC CGCCTCCATA TCCGTCGGAG ACAAACTCCC AGACTCCACC  CTCTCCTACC TCGATCCATC CACCGGAGAC GTCAAAACAG TAACCGTCTC ATCCCTAACC GCCGGAAAGA AAACAATCCT ATTCGCCGTA CCCGGAGCAT TCACACCAAC CTGCTCACAA  AAACACGTCC CTGGATTCGT ATCTAAAGCT GGAGAACTCA GATCTAAAGG CATCGATGTA ATCGCATGTA TCTCCGTCAA CGACGCGTTT GTCATGGAAG CGTGGAGGAA AGATCTGGGA  ATCAACGATG AGGTAATGTT GCTTTCCGAT GGTAACGGTG AATTCACAGG GAAGCTTGGA GTTGAATTGG ATTTGAGGGA TAAGCCTGTA GGACTTGGAG TTAGGTCAAG AAGATATGCG 
ATATTGGCTG ATGATGGTGT TGTGAAAGTT CTGAATCTTG AAGAAGGAGG TGCTTTTACT AATAGTAGTG CTGAGGATAT GCTTAAAGCT CTCTGA 

Retrieve as FASTA