View Redoxidase 7515

Entry information : AlyAPx06

Entry ID	7515
Creation	2010-08-10 (Christophe Dunand)
Last sequence changes	2010-08-10 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyAPx06

Name

AlyAPx06

Class

Ascorbate peroxidase [Orthogroup: APx2002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyAPx06 start..stop	S start..stop
AhalAPx08	852	0	1..429	1..424
AtAPx06	790	0	1..429	1..426
CagraAPx06	750	0	1..429	1..430
CrubAPx06	749	0	1..429	1..430

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	17662708..17662899	190	N° 2	17662975..17663109	133	N° 3	17663245..17663365	119	N° 4	17663449..17663549	99
N° 5	17663635..17663722	86	N° 6	17663827..17663894	66	N° 7	17663969..17664055	85	N° 8	17664140..17664214	73
N° 9	17664297..17664374	76	N° 10	17664475..17664579	103	N° 11	17664712..17664771	58	N° 12	17664871..17665050	178
join(17662708..17662899,17662975..17663109,17663245..17663365,17663449..17663549 ,17663635..17663722,17663827..17663894,17663969..17664055,17664140..17664214,176 64297..17664374,17664475..17664579,17664712..17664771,17664871..17665050)

Literature and cross-references AlyAPx06

DNA ref.	Phytozome 12: scaffold_2 (17662708..17665050)

Protein sequence: AlyAPx06

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	429 (297)
PWM (Da):	46394.75 (33003.7)	Transmb domain:	o400-422i
PI (pH):	7.92 (8.88)	Peptide Signal:	cut: 23 range:23-319

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAVSLSAASHLLCSSTRVSLFPAVTSSSSPVVALSSSASPHSLSS
LRSVASSSLFPCTTSFVLQRKHPINGTSTRMVSPKCAASDAAQLRSAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPQRGGANGSLRFEAELKHAANAGLLNALKLIQPIKDKYPNISYADLFQLASATAVEA
GGPEIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDEIVALSGAHTLGRARPDRSGWGKPETKYTKTGPGEAGGQSWTVKWLKFDNSYFKDIKEKRDEDLLVLPTDA
VLFEDPSFKNYAEKYAEDPAAFFKDYAEAHAKLSNLGAKFDPPEGIIIDNAPEKFVAAKYSTGKKELSDSMKKKIRAEYEAIGGSPDKPLPTNYFLNIIIAIGVLVLLSTLFGGNNNSDF
SGF*

Retrieve as FASTA

Remarks

complete sequence from genomic (chromo 2, 11 introns)

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGTTTCTCTCTCCGCCGCCTCTCACTTACTCTGTTCCTCCACCAGAGTATCTCTTTTCCCCGCCGTCACCTCCTCCTCGTCCCCTGTCGTTGCTCTTTCTTCCTCTGCATCGCCA
CATTCTCTGTCTTCTCTTCGAAGCGTCGCGTCTTCTTCTCTGTTTCCTTGCACCACCTCCTTCGTTCTTCAGAGGTATTCTTCCTTCAGTTGCGAGATTCATACTTTTGTAAATTTCTCT
CTGAACATAACATTTTCTGTTGATTTTAGAGAAAACATCCGATCAATGGGACGAGCACGAGGATGGTTTCACCAAAATGTGCGGCTTCTGATGCAGCTCAATTGAGAAGCGCTAAAGAAG
ATATCAAAGTTCTTCTCCGGACTAAGTTTTGTCATCCCATTTTGTGGTAAAGTATCTTTCTCTTCTTTTGCAGCTGGATCACGATTCTACGGCATTGGTACTACAGATATTGGAGGAAGA
GAATTGAATTTTGTGAGTCATGTTGCTTTGTGTTTGACAAGGGTAACATGTTTCAATGCAGGTTAGATTGGGATGGCACGATGCTGGTACATATAACAAGAACATTGAGGAGTGGCCACA
GAGAGGTGGAGCTAATGGAAGTCTTAGGTTTGAGGCTGAGCTTAAGCATGCTGCAAATGCCGCGGTACTGTTTCCAACACAATTCACCTGCGTTGTGGGCTTGAGACTTTGTTTTTGGTC
TTTATATTCTACTTTTGACTTTTCCAGGTCTGCTTAATGCTTTAAAGCTTATTCAGCCTATCAAAGACAAGTATCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTGCCACTG
CAGTAGAGAGGTTCTGAAATCCTGATGAAATTATGTTGGGCTTGGCTTAGCAGGAAACTACGTAGGTCTAAAAACTTTACTGCTTTTAACTTCAGGAGGCTGGTGGTCCTGAAATCCCGA
TGAAATATGGGAGAGTTGATGTCGTAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGTGGTTAACTAATCCTTTCCATTGTCTGTTTCATGGCTTCAATGAGTTTGTTTCAGAT
TCTATTATGGACTAATTAAGTTAACGAGGTCATATGTGCTGTGTTTTAGATGCTGGACCTCCCTCACCAGCTGATCATTTGAGAGATGTATTTTACAGAATGGGACTAGATGACAAGAGG
TGGTTTTGATTCTGTTCCATGTCAAACATGAATATTCTCAATTTCTGACAGTCGAGGTTGTTTTGTCAAGCAGGAAATAGTTGCCTTGTCTGGTGCACATACCTTAGGAAGAGCCAGACC
AGACCGTAGCGGTTGGGGAAAACCTGAGACAAAGTACACGCGGTATAATAAACGACAAAATGAACTCCCTTATGTTGTTGTTGCAATGATAGTGTAGAGATGTTATGGAAACGTTCAACA
TGGCAGAAAACTGGACCAGGAGAAGCAGGAGGACAGTCATGGACAGTGAAATGGCTTAAGTTCGACAATTCTTACTTCAAGAGGTCTAACTCTCTATCTTTCTTAGTAACTTGGTTTGAG
ACTGAAGAAGAGTTTTCTGAATCATTGACTTCTATGACTTTGCAGGATATCAAAGAAAAGAGGGATGAAGATCTTCTGGTGTTACCCACTGATGCTGTACTATTCGAAGATCCTTCATTC
AAGAGGTATAAAGTATAAACAACAGTGATTGCTAGAAAGATGCCTCAGAAGTAGTAGTTCAGTGTTAATTAAGAGGAAATGTTTTCAAAAAAATCTGTTTTACAGAACTATGCGGAGAAG
TATGCTGAAGATCCGGCTGCATTTTTCAAGGATTACGCTGAAGCTCATGCCAAGCTCAGCAATCTCGGCGCAAAATTTGATCCTCCCGAGAGGTACAAGGAAAGAGAGAAAATCTAATCT
CTTCGCACTTGTGTTAACCTTTATGAACCATTCGTTAAAATCCAGTTCAGTGACTTAAACCATATAGTCTAAAACAGCTAATGTGTTACTACAATACTAAACAGGGCATTATCATTGACA
ACGCTCCAGAGAAGTTTGTAGCTGCGAAGTATTCCACGGGAAAGAGGTTTGTCCTTTCTAAACAAAAATGTGTTTGTGTAGCTTATTCTAATATACATGTTGAGGAAACGAGTCTTGTTT
TTAATTTTCCAGTAATATTTTGCAGAAGGAGCTTTCGGATTCGATGAAAAAGAAGATAAGAGCAGAGTATGAAGCAATTGGAGGAAGCCCAGATAAGCCATTACCCACAAATTACTTCCT
TAACATCATAATTGCCATTGGCGTTTTGGTCCTCTTGTCCACTCTCTTTGGTGGTAATAACAATTCCGATTTCTCTGGTTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA