View Redoxidase 7525

Entry information : AlyAPx05

Entry ID	7525
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-08-12 (Christophe Dunand)

Peroxidase information: AlyAPx05

Name

AlyAPx05

Class

Ascorbate peroxidase [Orthogroup: APx2002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyAPx05 start..stop	S start..stop
NoffAPx05-1A	610	0	1..366	1..362
BstrAPx05	610	0	1..370	1..367
CagraAPx05	610	0	1..370	1..373
BnAPx04-1Aa_other	602	0	1..370	1..354

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7525' 'join(18534569..18534793,18534868..18535014,18535095..18535215,18535299..18535399,18535471..18535558,18535662..18535729,18535814..18535900,18536007..18536081,18536176..18536253,18536339..18536443,18536688..18536703) '

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	18534569..18534793	223	N° 2	18534868..18535014	145	N° 3	18535095..18535215	119	N° 4	18535299..18535399	99
N° 5	18535471..18535558	86	N° 6	18535662..18535729	66	N° 7	18535814..18535900	85	N° 8	18536007..18536081	73
N° 9	18536176..18536253	76	N° 10	18536339..18536443	103	N° 11	18536688..18536703	14
join(18534569..18534793,18534868..18535014,18535095..18535215,18535299..18535399 ,18535471..18535558,18535662..18535729,18535814..18535900,18536007..18536081,185 36176..18536253,18536339..18536443,18536688..18536703)

Literature and cross-references AlyAPx05

DNA ref.	Phytozome 12: scaffold_6 (18534569..18536703)

Protein sequence: AlyAPx05

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	370 (293)
PWM (Da):	40459.62 (30821.1)
PI (pH):	8.95 (6.10)	Peptide Signal:	cut: 27 range:27-319

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTERVFLTLNGTLLSRPKTTATTMSSSLRSTTAASRLLRSSSSTRSTLTLSAFTSLSFARSLVSSPLLSSSPLDFQKKYRVSSVNRSFNSTAATTKCSASDPDQLKNAREDIKELLNTKF
CHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFEIELKHAANAGLVNALNLIKDIKEKYSGITYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEEGRLPDAGPPSPANHLR
EVFYRMGLDDKDIVALSGAHTLGRSRPERSGWGKPETKYTKEGPGAPGGQSWTPEWLKFDNSYFKEIKEKRDEDLLVLPTDAAIFEDSSFKVYAEKYAADQDAFFKDYAVAHAKLSNLGA
KFDPPEGIVI

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 6, 10 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACAGAGCGTGTGTTTCTCACACTCAACGGAACCCTCCTATCTCGTCCCAAAACCACCGCAACAACAATGTCTTCTTCTCTCCGTTCTACCACCGCCGCTTCTCGTCTCCTCCGCTCC
TCCTCCTCCACCAGATCCACTCTCACTCTCTCCGCTTTCACTTCTCTCTCCTTCGCCAGATCTCTCGTCTCTTCTCCACTTCTCTCTTCTTCACCCCTTTCTCAGAGGTATATATATCCT
TCTAAAGCCTGATTTTCGAAATAATCCGATCTGATTTTTGATTCTTCTGTTGGATTTCCAGAAGAAATATCGAGTTTCGTCGGTGAATCGGAGCTTCAACTCCACCGCCGCAACTACTAA
ATGTTCAGCTTCAGATCCTGATCAGTTAAAAAATGCTAGAGAAGATATCAAAGAGCTTCTCAACACCAAATTCTGCCATCCAATTTTGTGGTTCGTTTGATTCCACTAATCACTTCTCTG
ATTCGTTTTATCGGTTTTTTGATATTATGTTGCGTTGTGTTGAATCATAGGTTCGATTAGGTTGGCATGATGCTGGTACATACAATAAGAACATTAAGGAATGGCCACAGAGAGGTGGAG
CTAATGGAAGTTTGAGATTTGAGATTGAGCTTAAGCATGCTGCGAATGCTGTGGTATAATATCACTTTATACGAATACGAATTAACGTCGTTTACTTGTGTTTGTTTCTATAAGCTTTGT
TTGTTGTGTGGTTTAGGTCTTGTGAATGCTTTAAACTTGATTAAGGATATCAAAGAGAAGTACTCTGGGATCACTTATGCTGATTTATTCCAATTGGCTAGTGCTACTGCTATAGAGAGG
TGAGGTTGATGATTCTTAACCTAGTTTTTACTGGTTATGAAAAGATTTACTAAAGTTTTGGTAGTTTTAGGAAGCTGGAGGACCTAAAATACCGATGAAATATGGAAGAGTTGATGCCTC
TGGTCCTGAGGATTGTCCTGAAGAAGGAAGGCTCCCTGTGGTAAAGTTTCTTCATTTACTGGTGTTTTCGGGCGTTCTTTGGTTATATTATTTGGGGGTATTAAAGTTGTACTGATTACA
AATATCGCATGTTTGTTCTATAGATGCTGGTCCTCCTTCACCTGCTAATCATCTCAGAGAAGTTTTTTACAGAATGGGACTAGACGACAAGAGGTGATTGCGGTCGTAATTTTATCATAG
TTATGGAAGATCAGTGAGTTAATTATCCATATTGATTTTTTTTTTTTGTAAATGCAGGACATAGTTGCGTTGTCTGGGGCTCACACGTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGG
GGGAAGCCAGAGACGAAATACACGCGGTATTATCCAGTTCTATTACGTATTGTCATGTTTGGGATTGCAGAACGTCAATGGAATAGAACATTTCGAATGTTAAGTTCTTAATGTGTTTTT
TTCGCATTATAGAAAGAGGGACCAGGCGCACCAGGAGGACAGTCATGGACACCAGAGTGGCTGAAGTTTGACAATTCTTACTTCAAGAGGTTGCATTTTCAGAAGATAACTTTTACTTTA
CACTTTGTAATAATAGTCTTCATTTTTCGATTTTGATGTCTATTAATATAATTATGATAACAGGAAATCAAGGAAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATC
TTTGAAGATTCTTCTTTCAAGAGGTAACAAACCGAGGTTGAAACATATCAATTCGAAGAAACTTTCTGAGTCTTTGCCTTTAAAACTGAAACTGCATTGCAATTGCAGGTCTATGCTGAG
AAGTATGCTGCTGATCAGGATGCATTCTTCAAGGATTACGCTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAAAATTTGACCCTCCTGAGAGGTTAGCATTCTTTAGATTTCTGTCA
TGTGAATAGCATCAAAACCATTATCACTCTTGACCTTATCATCTTTAACCGAAAACGACCTTGAAATCAATCTTTTGGTCTACATAGAGAATTTACAAATTTGGCGAATCTAGAGCTGTG
GAAATTAGATATCATCTTTTTGACATTGGATGAGTCTCCACTCCATTGATGAATAAATTTGCAGAGGCTTAAGAACTGATTATCTGAATCTTTTGTGTAGGGTATCGTTATCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA