Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
335 |
PWM (Da): |
34879.19 |
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PI (pH):
| 4.76 |
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Sequence
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MAVTNLPTCDGLFIIGLIVIVSSMFRTSSAQLNATFYSGTCPNASAIVRSTIQQALQSDARIGASLIRLHFHDCFVNGCDASILLDDSGSIQSEKNAGPNANSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDGLTANLAGANSSIPSPVESLSNITSKFSAVGLNMNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSVSTITNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGENRLDCKKVNGS |
Retrieve as FASTA
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Remarks |
Complete sequence from genomic (chromo 6, 3 introns). Probable sequencing error between GNI and SPL (3'end) => extra 4 nt (agtc) which induce a shift and incorrect prediction from Phytozome. |
DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCTGTAACAAATCTTCCTACTTGTGATGGTTTGTTCATCATCGGTCTTATTGTTATCGTTTCTTCAATGTTTAGGACATCATCTGCGCAACTAAACGCAACGTTTTACTCTGGGACT TGCCCTAACGCCTCTGCCATCGTACGTAGCACTATTCAGCAAGCTCTTCAATCTGATGCAAGAATTGGAGCCAGCCTAATCCGCCTTCATTTTCACGATTGCTTTGTTAATGTATACTAA TCTTTTTCGATGCAACTCTTTTAACATAAAACCCGATTGTTCTGTTTCGCCCTAAACCGCTACTTTGCTTCTTTATTATTCTAAAGGGCTGTGATGCATCGATCTTGCTTGACGACAGTG GAAGCATCCAGAGCGAGAAGAACGCTGGTCCGAATGCAAACTCAGCTAGAGGATTCAACGTTGTCGATAATATCAAGACTGCCCTTGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTG ACGTTTTAGCCCTTGCCTCAGAGGCCTCTGTATCTTTGGTAATTACATGTTCTTTGTGAACATATGAAACAAAACATAACTAAAAATTATTGTGGTATAATTCTGTTTTAGTAACAATTA AAACACGTATATATTTATTAACATATACGTTTGATTATCTTCAGGCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATGGTCTCACTGCAAACCTAGCCGGGGCAAATTCGT CCATTCCTTCTCCGGTCGAAAGTCTTAGCAACATCACATCTAAATTTTCGGCTGTCGGGCTAAATATGAACGATCTAGTTGCCTTATCTGGTGAGTTCATCTACATATTTAGTTACTTGT GGCTCAAGTTGAAACAAAACCCTAACGCCAACTTTTGTGGATCGACGTAGGTGCGCATACATTCGGGCGTGCTCGATGTGGAGTGTTCAACAACAGACTATTTAACTTCAGCGGGACAGG AAATCCCGACCCTACTCTAAACTCAACGCTTCTCAGCACTCTTCAACAACTATGTCCTCAAAACGGCAGCGTATCAACGATCACCAATCTCGATCTGAGCACACCAGATGCGTTCGATAA CAATTACTTCACCAACCTTCAGAGCAACAATGGGCTTCTTCAGTCAGACCAAGAGCTGTTCTCTACCACCGGTTCATCCACCATCGCGATTGTTACTTCATTTGCAAGTAACCAGACTCT GTTTTTTCAGGCCTTTGCTCAGTCCATGATCAACATGGGGAATATTAGTCCCTTGACTGGGAGTAATGGAGAGAATAGATTAGACTGTAAGAAGGTTAATGGAAGTTGA |
Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCTGTAACAAATCTTCCTACTTGTGATGGTTTGTTCATCATCGGTCTTATTGTTATCGTTTCTTCAATGTTTAGGACATCATCTGCGCAACTAAACGCAACGTTTTACTCTGGGACT TGCCCTAACGCCTCTGCCATCGTACGTAGCACTATTCAGCAAGCTCTTCAATCTGATGCAAGAATTGGAGCCAGCCTAATCCGCCTTCATTTTCACGATTGCTTTGTTAATGGCTGTGAT GCATCGATCTTGCTTGACGACAGTGGAAGCATCCAGAGCGAGAAGAACGCTGGTCCGAATGCAAACTCAGCTAGAGGATTCAACGTTGTCGATAATATCAAGACTGCCCTTGAAAACGCT TGCCCTGGTGTTGTCTCTTGCTCTGACGTTTTAGCCCTTGCCTCAGAGGCCTCTGTATCTTTGGCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATGGTCTCACTGCAAAC CTAGCCGGGGCAAATTCGTCCATTCCTTCTCCGGTCGAAAGTCTTAGCAACATCACATCTAAATTTTCGGCTGTCGGGCTAAATATGAACGATCTAGTTGCCTTATCTGGTGCGCATACA TTCGGGCGTGCTCGATGTGGAGTGTTCAACAACAGACTATTTAACTTCAGCGGGACAGGAAATCCCGACCCTACTCTAAACTCAACGCTTCTCAGCACTCTTCAACAACTATGTCCTCAA AACGGCAGCGTATCAACGATCACCAATCTCGATCTGAGCACACCAGATGCGTTCGATAACAATTACTTCACCAACCTTCAGAGCAACAATGGGCTTCTTCAGTCAGACCAAGAGCTGTTC TCTACCACCGGTTCATCCACCATCGCGATTGTTACTTCATTTGCAAGTAACCAGACTCTGTTTTTTCAGGCCTTTGCTCAGTCCATGATCAACATGGGGAATATTAGTCCCTTGACTGGG AGTAATGGAGAGAATAGATTAGACTGTAAGAAGGTTAATGGAAGTTGA |
Retrieve as FASTA
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