View Redoxidase 7571

Entry information : AlyGPx06

Entry ID	7571
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyGPx06

Name

AlyGPx06

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyGPx06 start..stop	S start..stop
AtGPx06	461	3.81e-168	1..235	1..232
ThasGPx06-1	357	9.49e-127	1..235	1..242
ThasGPx06-2	353	4.95e-125	1..235	1..241
BnGPx06-2_other	345	5.43e-123	67..235	1..169

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	21316827..21317072	244	N° 2	21316654..21316730	75	N° 3	21316494..21316555	60	N° 4	21316292..21316410	117
N° 5	21315707..21315874	166	N° 6	21315572..21315607	34
complement(join(21315572..21315607,21315707..21315874,21316292..21316410,2131649 4..21316555,21316654..21316730,21316827..21317072))

Literature and cross-references AlyGPx06

DNA ref.	Phytozome 12: scaffold_6 (21317072..21315572)

Protein sequence: AlyGPx06

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	235 (310)
PWM (Da):	25890.38 (32352.3)
PI (pH):	9.71 (8.15)	Peptide Signal:	cut: 30 range:27-336

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MLRSSIRLLYIRRTSPLLRSLSSSSSSSSSSSSKRFDSAKPLFNS
HRIISLPISTTGAKLSRSEHSMATSSEPKSIYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKDGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDVDVNGDKAAPIYKFLKSSKGGLFGDGIKWNFAKFLV
DKDGNVVDRYAPTTSPLSIEKDLKKLLGVTA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 4, 5 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCTTCGATCCTCAATTCGACTTCTCTATATAAGAAGAACCAGTCCTCTCCTTCGAAGTTTATCATCATCATCATCATCATCATCATCATCTTCATCAAAACGATTCGATTCTGCGAAA
CCACTTTTCAATTCTCATCGGATTATTTCTCTTCCAATCTCTACAACGGGTGCTAAACTTTCTAGATCGGAACATTCAATGGCTACTTCTTCCGAACCCAAATCTATCTACGATTTCACC
GTCAAGGTTCGATTTTAATTTCTTTTATTAGATCGGAAATTTGTGTTTGTTGATTGGATTTGTGATCCGATTTTGAACGATTTGAGTCTGGAATTGAATTAGGAGATGCTAAGGGAAACG
ATGTTGATCTAAGCATCTACAAGGGGAAGGTTCTTTTGATTGTGAACGTTGCTTCTCAATGGTAAAACTTCGATATTTGTGTAACACACAGGCTTGATTTGTGATCATAAATTCATTGGT
TAGTGACTTAGTTTCTTTGGTGTTTGAATTTTCATGCAGTGTGGCTTGACTAATTCGAACTATACTGAGCTTGCACAGCTTTATGAGAAGTACAAAGACCATGGTATATAATTACTAGTT
GTTTGTTTGTTTGTAATCATGGGTTGTGATTTTGTTTGTTGTTGATGGTTACGATTTTTGATTCAGGGGGTTTGAGATTCTTGCGTTCCCGTGTAATCAGTTTGGGAATCAAGAGCCTGG
TACAAATGAAGAGATTGTTCAGTTTGCTTGTACTCGTTTCAAGGCTGAGTACCCGATTTTCGACAAGGTAGCAACTTTTCTTGTTCTGTGATTCTTTCTAGTTCAGTCGTATTTTAACAT
CTTGGGATATACTAGTTCTTCGTTTTAGTTTGAAACAAGAGTAATCCCATTTTGAATGAAGAAGTTATTTAGTTTCGATTTCGTAGTTTTTCGCATTTCTTGAGTAAACCCTCGAGATGA
GGTAGCACTTTTCAATTGTCCACTATCTCAAATTCATTCAGACATGATATGTGAGAATGTTGCAAGCTCTAATAGTATCATTGAACCATTTTTGGATCATGTAGTTGAAACTAATAACTT
TTTCGTTCAAAATGGGTGACTCTGTGTTTCAAACTACAACCAAGAATTCAAGCTCTTTCAGTATCAGTGAATCATTTTCAGATCTCTACTTGGACTTGATTCTTTTACCTTTGCACTAAT
ACAGGTGTTGATGTGAACGGTGACAAAGCTGCTCCAATCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTTTTTGGAGACGGCATCAAGTGGAACTTCGCTAAGTTCTTGGTTGACAAA
GATGGAAATGTTGTTGACCGTTACGCGCCAACTACTTCTCCTCTCAGTATTGAGGTAATAATGTCTCTATCACATATAATCATCAAATACTTGAGTTTTGTTTAGAGCCTCAGTTTCTAA
TTGCTTTGTTACATCGTTGTTTCGCAATTGCAGAAAAGGACCTGAAGAAACTGTTGGGAGTTACTGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA