View Redoxidase 7573

Entry information : AlyGPx01

Entry ID	7573
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyGPx01

Name

AlyGPx01

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyGPx01 start..stop	S start..stop
AtGPx01	470	2.42e-171	1..236	1..236
BnGPx01_other	413	5.92e-149	4..236	1..236
ThasGPx01	371	2.97e-132	9..236	2..235
AtGPx07	357	5.84e-127	10..236	4..233

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3674746..3675000	253	N° 2	3675282..3675358	75	N° 3	3675470..3675531	60	N° 4	3676051..3676169	117
N° 5	3676239..3676406	166	N° 6	3676496..3676525	28
join(3674746..3675000,3675282..3675358,3675470..3675531,3676051..3676169,3676239 ..3676406,3676496..3676525)

Literature and cross-references AlyGPx01

DNA ref.	Phytozome 12: scaffold_4 (3674746..3676525)

Protein sequence: AlyGPx01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	236
PWM (Da):	26006.29
PI (pH):	9.94

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVSMTTSSSSYAPFSTVFNSSRPNSSATFLVPSFKFSTGISNFANLSNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSE
LSHLYEKYKSGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLLAA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 4, 5 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTTTCCATGACTACTTCTTCTTCTTCATACGCACCATTCTCTACAGTCTTCAACAGTTCCAGACCTAATTCATCTGCAACCTTTCTCGTCCCTTCCTTCAAATTCTCCACCGGAATA
TCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAATCTCCAATTAATCCTGGGTTTCTCTTCAAGTCCCGTCCTTTCACTGTTCAAGCTAGAGCTGCTGCAGAAAAGACCGTTCAC
GACTTCACCGTTAAGAGGTTTGGTTCTTTTTCTTTTACCCAATTCAGACCAAAAAACTAGGGTTCTCTAAAATCTGTCTGCTCTTTACTAAATTGGGAATCTTCAAATTTGCAATGAAGT
TCATAGTGATTTCAATTGGTGACGTATATAAAAATCTGAACTTTGAGACATAAGTGTATAGTAAAAGCTCAAGCTCAAGTATTTTAGGTTCATATTTTTATTGAATTTCGTAGTGTATAT
ATATACTTAGGTTAGTGATTTCAATTAGAGACATAATTGGATTCTTTTTTGGAGGCAGGACATTGATGGGAAAGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGATTGTCAA
TGTTGCTTCAAGATGTGGTAAAGCTTCTCCTTCTTCATCCTCTGTGATGCGATTTTTAGAAGTCGTTTTTGATGATAGTTCATGTAGAGGTTTTTGAGCTTAAAGATTGTGTTTTCATGA
ATATACAGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAAGCCAAGAGGTGAGCTCTAACTAGCTTCTACACATTGTGATCTATTCGTTGCAATCG
ATTTGCAACCAGTGGGGTCTTTTGTTTAATCTTGTTCTTGGAGTTTATTTGTGTATTCGCATTATCCCATTTTGATGGTTCGTTCATTTTTCAGTGCCGTTTTGGGCATTTTGGTGTTTG
GTTACTTACTGAAAATTCCTCTTGTTTTGTGTTCAGTTAATTGTTCTGTAGATCTTTATATCATTCTTGGTGTCAATATGATTTGGTCCTATTGTTGCTCCTACTACGGCGATGTTACTA
GGTTGTGGTTTAACTTAATTTATGGAAATTAATTGTTCTGCAATTTTGAACTGGAAGCGAATTCAGCATCTTTGTTGGATTGATGATAATCGCACTCATCCGTTCTCCATAGCTAAAAGA
ATTTTCTTGAAATTACGGATCTTTTCATTAATCATTTAGGGGGCAATAAGCCAATGTACGTGTATTTTTCATGCATTTGCAGTTAATAACACTAACTTGTTTGGATTACAGGATTTGAGA
TTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCGGAGATCAAACAATTCGCTTGCACTCGGTTTAAAGCAGAGTTCCCTATATTTGATAAGAGGTATAAAT
AATCCAAAACATTCACCCTTGTTTTCAGGTTGCAGATTAGAATAAAGTTTAAATCCGACAGGTTGACGTAAATGGACCAAGCACAGCGCCCATCTACGAATTCTTGAAATCAAACGCAGG
AGGATTCTTGGGTGGTCTCATTAAATGGAACTTTGAGAAGTTTTTGATTGATAAAAAGGGAAAGGTCGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAGAGGTACAGTTA
AGGGACTACTTCCAATTCGGTTCATAGCGGTTTGATTCCCGGCTTGTAACCAAATCGTATTTGTTTCGGCTGTTTTGCAGAAAGACATCCAGAAGTTGCTTGCCGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST