Entry information : AlyGPx01
Entry ID 7573
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyGPx01
Name AlyGPx01
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyGPx01
start..stop
S start..stop
AtGPx01 470 2.38e-171 1..236 1..236
BnGPx01_other 413 5.83e-149 4..236 1..236
ThasGPx01 371 2.92e-132 9..236 2..235
AtGPx07 357 5.76e-127 10..236 4..233
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7573' 'join(3674746..3675000,3675282..3675358,3675470..3675531,3676051..3676169,3676239..3676406,3676496..3676525)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3674746..3675000 253 N° 2 3675282..3675358 75 N° 3 3675470..3675531 60 N° 4 3676051..3676169 117
N° 5 3676239..3676406 166 N° 6 3676496..3676525 28  
join(3674746..3675000,3675282..3675358,3675470..3675531,3676051..3676169,3676239 ..3676406,3676496..3676525)


exon

Literature and cross-references AlyGPx01
DNA ref. Phytozome 12:   scaffold_4 (3674746..3676525)
Protein sequence: AlyGPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   236
PWM (Da):   %s   26006.29  
PI (pH):   %s   9.94
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVSMTTSSSSYAPFSTVFNSSRPNSSATFLVPSFKFSTGISNFANLSNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSE
LSHLYEKYKS
GFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLLAA*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 5 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCCATGACTACTTCTTCTTCTTCATACGCACCATTCTCTACAGTCTTCAACAGTTCCAGACCTAATTCATCTGCAACCTTTCTCGTCCCTTCCTTCAAATTCTCCACCGGAATA
TCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAATCTCCAATTAATCCTGGGTTTCTCTTCAAGTCCCGTCCTTTCACTGTTCAAGCTAGAGCTGCTGCAGAAAAGACCGTTCAC
GACTTCACCGTTAAG
AGGTTTGGTTCTTTTTCTTTTACCCAATTCAGACCAAAAAACTAGGGTTCTCTAAAATCTGTCTGCTCTTTACTAAATTGGGAATCTTCAAATTTGCAATGAAGT
TCATAGTGATTTCAATTGGTGACGTATATAAAAATCTGAACTTTGAGACATAAGTGTATAGTAAAAGCTCAAGCTCAAGTATTTTAGGTTCATATTTTTATTGAATTTCGTAGTGTATAT
ATATACTTAGGTTAGTGATTTCAATTAGAGACATAATTGGATTCTTTTTTGGAGGCAGGACATTGATGGGAAAGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGATTGTCAA
TGTTGCTTCAAGATG
TGGTAAAGCTTCTCCTTCTTCATCCTCTGTGATGCGATTTTTAGAAGTCGTTTTTGATGATAGTTCATGTAGAGGTTTTTGAGCTTAAAGATTGTGTTTTCATGA
ATATACAGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAAGCCAAGAGGTGAGCTCTAACTAGCTTCTACACATTGTGATCTATTCGTTGCAATCG
ATTTGCAACCAGTGGGGTCTTTTGTTTAATCTTGTTCTTGGAGTTTATTTGTGTATTCGCATTATCCCATTTTGATGGTTCGTTCATTTTTCAGTGCCGTTTTGGGCATTTTGGTGTTTG
GTTACTTACTGAAAATTCCTCTTGTTTTGTGTTCAGTTAATTGTTCTGTAGATCTTTATATCATTCTTGGTGTCAATATGATTTGGTCCTATTGTTGCTCCTACTACGGCGATGTTACTA
GGTTGTGGTTTAACTTAATTTATGGAAATTAATTGTTCTGCAATTTTGAACTGGAAGCGAATTCAGCATCTTTGTTGGATTGATGATAATCGCACTCATCCGTTCTCCATAGCTAAAAGA
ATTTTCTTGAAATTACGGATCTTTTCATTAATCATTTAGGGGGCAATAAGCCAATGTACGTGTATTTTTCATGCATTTGCAGTTAATAACACTAACTTGTTTGGATTACAGGATTTGAGA
TTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCGGAGATCAAACAATTCGCTTGCACTCGGTTTAAAGCAGAGTTCCCTATATTTGATAAG
AGGTATAAAT
AATCCAAAACATTCACCCTTGTTTTCAGGTTGCAGATTAGAATAAAGTTTAAATCCGACAGGTTGACGTAAATGGACCAAGCACAGCGCCCATCTACGAATTCTTGAAATCAAACGCAGG
AGGATTCTTGGGTGGTCTCATTAAATGGAACTTTGAGAAGTTTTTGATTGATAAAAAGGGAAAGGTCGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAG
AGGTACAGTTA
AGGGACTACTTCCAATTCGGTTCATAGCGGTTTGATTCCCGGCTTGTAACCAAATCGTATTTGTTTCGGCTGTTTTGCAGAAAGACATCCAGAAGTTGCTTGCCGCTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCCATGACTACTTCTTCTTCTTCATACGCACCATTCTCTACAGTCTTCAACAGTTCCAGACCTAATTCATCTGCAACCTTTCTCGTCCCTTCCTTCAAATTCTCCACCGGAATA
TCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAATCTCCAATTAATCCTGGGTTTCTCTTCAAGTCCCGTCCTTTCACTGTTCAAGCTAGAGCTGCTGCAGAAAAGACCGTTCAC
GACTTCACCGTTAAG
GACATTGATGGGAAAGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGATTGTCAATGTTGCTTCAAGATGTGGTTTGACATCATCAAATTACTCAGAG
CTTTCACATCTGTACGAGAAATACAAAAGCCAAG
GATTTGAGATTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCGGAGATCAAACAATTCGCTTGCACT
CGGTTTAAAGCAGAGTTCCCTATATTTGATAAG
GTTGACGTAAATGGACCAAGCACAGCGCCCATCTACGAATTCTTGAAATCAAACGCAGGAGGATTCTTGGGTGGTCTCATTAAATGG
AACTTTGAGAAGTTTTTGATTGATAAAAAGGGAAAGGTCGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAG
AAAGACATCCAGAAGTTGCTTGCCGCTTAA

Retrieve as FASTA