View Redoxidase 7574

Entry information : AlyGPx02

Entry ID	7574
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyGPx02

Name

AlyGPx02

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyGPx02 start..stop	S start..stop
AtGPx02	341	9.42e-123	1..169	1..169
BnGPx02-2_other	333	1.38e-119	1..169	1..169
BnGPx02-1_other	326	1.3e-116	1..169	1..169
BrGPx02_other	323	1.37e-115	1..169	1..170

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	14917510..14917554	43	N° 2	14917223..14917299	75	N° 3	14916837..14916898	60	N° 4	14916633..14916751	117
N° 5	14916269..14916436	166	N° 6	14916142..14916180	37
complement(join(14916142..14916180,14916269..14916436,14916633..14916751,1491683 7..14916898,14917223..14917299,14917510..14917554))

Literature and cross-references AlyGPx02

DNA ref.	Phytozome 12: scaffold_4 (14917554..14916142)

Protein sequence: AlyGPx02

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	169
PWM (Da):	18886.73
PI (pH):	6.62

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MADESPKSIYDFTVKDIGGNDVSLNQYKGKTLLIVNVASKCGLTDANYKELNVLYEKYKEGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDVDVNGKNTAPLYKYLKAEKGG
LLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDVQTLLGQASS*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 4, 5 introns). Also found in scaffold_762.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGGATGAATCTCCAAAGTCTATCTACGACTTCACCGTCAAGGTTTTTTCTCTCAATGTTTTTTTTTTTTCATTATTGTTAGTCTTAGATTCTTAATTCAAATAAACAGAAAAACCA
TAAGGTTTGATCCAAAAATAAGATAGCGAAATTTTCAAAGTTCGATCTCAGGCAAAAGAATATAGATGAAGAATTAAGGTTTGTTATAAAAAAAAAAAACTATGTGTGTTTATATTTTAT
TCATGAAAATGGCAGGAGATATCGGAGGTAACGATGTGAGTTTGAACCAATACAAAGGCAAAACTCTTCTGATTGTCAATGTTGCTTCCAAATGGTAAAAATCCTTTTTCACTGTCAATT
TATTTATTTTTATTTTTGTTAGAAGCCATTGCCTAGTTATATATGCAAGATAGTATTTGTAATCTACCAGATTCAAAATATATATAAACGTAAGGATCTTGTGAAATTAGTAGTTGATCA
ATCCGGTTCAGTTTGGTTTGATTAGTACCTGTCCTTTGTTCTTAACTGCGATATTGCTTTGTTAAAATATAAACAAAGATTCTAGTCATATTGGTCTTCGTTTGTTCAAATTTCAAGATT
TTGCTTAAAGTCAATCAAATAGATGAAATAAAAACTGAAATTTCTTATTAACTTGCAGTGTGGTCTGACTGATGCCAACTACAAGGAACTGAATGTTCTGTACGAGAAATACAAGGAGCA
AGGTCTGTGATTTATATCTACTCTCACAAAATTTAACCCGGTTTTAATTGTGACTGGAACTAAATACATGTAACAAATTATGAATAGGGGGTTGGAGATATTAGCATTCCCTTGTAACCA
GTTCTTAGGACAAGAACCAGGTAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTTCAAAGCTGAATTCCCCATCTTTGACAAGGTAATTCATTTTGTCTTTATCACACTTCTCTA
TTTCATTGATTAATGTTTTACTAATGATTGATCTTTACAACATTATTAAGAGATGTGAGTTTGTGTATAAGTAACTTAATGAGGAATGATGATTGTCTAATAGTGAAAGAAAAAGAGTAG
TGTATATATATAAATACTTGACGGAAATGTTGATGGCAATGTAGGTGTGGATGTGAACGGGAAAAACACGGCGCCATTATACAAATACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGA
TGCCATCAAATGGAATTTCACCAAATTCTTGGTTTCTCCTGATGGCAAAGTCTTACAGAGATATTCTCCCAGAACCTCTCCTCTTCAATTCGAGGTACGTACCATCCTGGCTTTCACCTA
AACCGGAATCCATCCATACACAACCATCTTAATAATGACCGGTTTGTTTTTGGTTTATGCAGAAAAGGACGTTCAAACTCTGTTGGGACAGGCTTCTTCTTGA

Retrieve as FASTA

CDS►
Send to BLAST