View Redoxidase 7575

Entry information : AlyGPx07

Entry ID	7575
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2011-01-27 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-01-27 (Christophe Dunand)

Peroxidase information: AlyGPx07

Name

AlyGPx07

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyGPx07 start..stop	S start..stop
AtGPx07	404	3.31e-145	1..236	1..233
BnGPx01_other	351	2.27e-124	8..236	11..236
AlyGPx01	343	1.83e-121	5..236	11..236
BnGPx07_other	342	6.62e-121	2..236	3..232

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	4146551..4146805	253	N° 2	4146266..4146342	75	N° 3	4146055..4146116	60	N° 4	4145841..4145959	117
N° 5	4145604..4145771	166	N° 6	4145337..4145363	25
complement(join(4145337..4145363,4145604..4145771,4145841..4145959,4146055..4146 116,4146266..4146342,4146551..4146805))

Literature and cross-references AlyGPx07

DNA ref.	Phytozome 12: scaffold_7 (4146805..4145334)

Protein sequence: AlyGPx07

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	235
PWM (Da):	25814.31	Transmb domain:	i7-29o
PI (pH):	10.12

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASFYASFATVFNGFAANPPPNSSAILVPSLRFSTGTSNTRNISGLGNGVSLKSSNNHRFLVKSRNFGVYARAAAEKTVHDFTVKYIDGNDVSLDKLKGKPLLIFNVASRCGLTSSNFSE
LSHLYEKYKNQGFEILALPCNQFGGQ*PGSNPEIKQFACTRFKVEFPIFDKVDVNGTSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKEGKVVERYPPTTSPFQNRKDIQKLLAA

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 7, 6 introns). Stop codon in frame and extra 5' intron (9 nt)(=> sequencing error!).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GCCTCCTTTTACGCATCATTCGCTACTGTCTTCAATGGTTTCGCTGCAAACCCACCTCCGAATTCTTCGGCTATTCTCGTCCCTTCATTGAGATTCTCCACCGGAACATCAAATACTCGG
AATATATCTGGGTTAGGTAATGGGGTTTCCCTGAAATCGTCGAATAATCATAGGTTTCTAGTCAAATCCAGAAATTTTGGTGTTTATGCAAGAGCTGCTGCAGAGAAAACTGTTCACGAT
TTCACTGTAAAGGTATGTTTCTCTTTCTTAATTTATCTGAAGAAGAAAATTAGGTTTTTGTTTCTTCGTTAGCTTTAAATGCTATCGAAACGGAAGAATTTGGTCTGCCATCAAAATATG
ATTTTTCTTAATCTCACTGAATTATGTAGTACTCCTTCCTAACTAAAACCTAGACTTGGAGACATAATTATGTTTTGTTTTTTAATAATGACTGGGACAGTACATATAGATGGGAATGAT
GTTTCTCTGGACAAATTGAAAGGAAAACCTCTGTTGATCTTTAACGTCGCTTCAAGATGGTGATCATTGTTTTACTATTGTTCATTCGAATGCTATTTTTTTTTTTTTTTTTTTGCCATA
CCATTCGAATGCTATTTGATAATTTGATTTTGCTTCTAAAAAAAATTTTAAAAAGTGTTTTTTTTTTTGTTTTGCTTTACTGTTTCAGTGGTTTTTGACATCATCAAATTTCTCGGAGCT
TTCTCATCTGTACGAAAAATACAAGAACCAAGGTGTGCTTTTATAGTAAGCTTTTTAATATCTAATTTAATTAAGGTAACACATTGATTGTGACCTTCTCATCATTTATTGTGTGTCTCA
ATTTTAGGATTTTTGAGATTCTTGCTCTCCCTTGCAATCAATTTGGAGGTCAATAACCCGGTTCAAACCCTGAGATCAAGCAATTTGCTTGCACCCGATTCAAAGTGGAGTTCCCTATAT
TCGACAAGGTATGTAGGAAAAAATAGAACTCTCATTTTGGAGGTTTGAGAGAGATCTTCTAATGTTGTGTTCTTCAGGTTGAGATGTCAATGGAACAAGCACAGCTCCCATCTACAAGTT
CTTGAAATCTAATGCTGGTGGTTTTCTTGGTGATATCATCAAATGGAACTTTGAGAAATTCTTGGTTGATAAGGAGGGCAAAGTTGTCGAGAGATACCCTCCCACGACTTCTCCTTTCCA
AAATCGAGGTACCAATTCAAAACTCTCTATTCAATCTGAATAACTGGATCCTTGGTTTATGTCGTTTCCGGTTTGGTCCATGGTTCATGTCGTGAACCAAACCAGTTGGACTATTCTAAT
GTACATAGAGAATCTTTCAATTGATAACATCTCTAACATATATAACATTAATTTTTCCATGTGGCACGGCGGAATGTTGAGTGAGTCGTCTTAGTATTTTAATACTAACAATTTGTTTGT
TTGGCAGAAGGAGACATCCAGAAGTTGCTTGCGGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA