RedOxiBase: View Perox 7577

Entry information : AlyRboh09 (AlyRbohI)

Entry ID	7577
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2015-12-10 (Catherine Mathe)

Peroxidase information: AlyRboh09 (AlyRbohI)

Name (synonym)

AlyRboh09 (AlyRbohI)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyRboh09 start..stop	S start..stop
AtRboh09	1665	0	1..934	1..941
TsRboh09	1642	0	1..934	1..938
ThasRboh09	1217	0	1..934	1..918
CclRboh01	1138	0	8..934	5..946

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	20872885..20873494	610	N° 2	20872644..20872809	166	N° 3	20872517..20872562	46	N° 4	20872017..20872136	120
N° 5	20871172..20871579	408	N° 6	20870696..20871082	387	N° 7	20870515..20870610	96	N° 8	20870294..20870409	116
N° 9	20869996..20870163	168	N° 10	20869754..20869913	160	N° 11	20869463..20869672	210	N° 12	20869256..20869384	129
N° 13	20869088..20869166	79	N° 14	20868899..20869008	110
complement(join(20868899..20869008,20869088..20869166,20869256..20869384,2086946 3..20869672,20869754..20869913,20869996..20870163,20870294..20870409,20870515..2 0870610,20870696..20871082,20871172..20871579,20872017..20872136,20872517..20872 562,20872644..20872809,20872885..20873494))

Literature and cross-references AlyRboh09 (AlyRbohI)

DNA ref.	Phytozome 12: scaffold_6 (20873494..20868899)

Protein sequence: AlyRboh09 (AlyRbohI)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	934
PWM (Da):	106609.02	Transmb domain:	o367-384i501-523o549-571i580-597o
PI (pH):	8.44

Sequence 1268
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSMSFSGGTHDDRWGSDLTSAGEFTQSFPSFPATYSPSDGEELVEVTIEFPSGVLLNIESVTSTDPEITSCSASDSGSKSHSFGWSASSSRRISEFHTVEKAKKFSRDLKEKLQRISLGYSSRSAPEPVVPNVVDFTDPAVLCRSLTQRLTKSNGSCTERAINALKFISSKDNRIANWRDVQNNFANLSKDGYLCRSDFANCIGLENENSKEFADELFDAMCRRRRLMVDKINLQELYEFWYQITDESFDSRLQIFFDMVKNGDGRITENEVKIIILSASANNLLRLRERAEEYAALIMEELAPDGLYSQYIELKDLEMLLLEKDISHSYSQPFSQTSRALSQNLKDTRWGISRNLLYSLQDNWKRIWVLTLWLVIMGWLFMWKCYQYKRKDAFHVMGYCLVMAKGAAETLKFNMALILLPVCRNTITYLRSTALCHSVPFDDCINFHKTISVAIIIAMLLHASSHLACDFPRILTSTETDYKRYLVKYFGITRPTYFDLVNSPVGITGFIMVAFMVIAFILASRRCRRNLTKLPKPFDKLTGYNAFWYSHHLLLTVYVLLVIHGVSLYLEHKWYRKTIWMYLAVPVLLYIGERILRFFRSRLYTVEICKVVIYPGNVVVLRMTKPTSFDYKSGQYVFVQCPAVSKFEWHPFSITSSPGDDYLSIHIRQRGDWTEGIKKAFSVVCQAPEAGKSGLLRADGPNQRSFPELLIDGPYGAPAQDHWKYDVVLLVGLGIGATPFVSILRDLLNTIVKQQEQECLSGSCSNSNISSDHSFSCLNSEARSRIPQTQRKTLNTKNAYFYWVTREQGSFDWFKDIMNEIADSDRKGVIEMHNYLTSVYEEGDTRSNLLTMIQTLNHAKNGVDIFSGTKVRTHFGRPKWKKVLSKISTKHRNARIGVFYCGVPSLGKELSTLCHEFNQTGISRFEFHKEQF

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 6, 12 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCAATGTCATTTTCCGGCGGGACTCACGACGATCGTTGGGGTTCCGATTTGACTTCCGCCGGAGAATTTACCCAAAGCTTTCCATCGTTTCCAGCAACTTACTCACCTTCCGACGGC
GAAGAGCTCGTAGAAGTAACAATCGAATTCCCAAGCGGCGTACTATTAAACATCGAATCTGTTACCAGCACCGATCCAGAGATTACCTCTTGCTCTGCTTCTGATTCAGGATCAAAATCG
CATAGTTTCGGATGGAGCGCGTCGTCGAGTCGTCGGATCTCAGAGTTTCATACGGTGGAGAAGGCGAAAAAGTTCTCTAGAGATCTGAAAGAAAAGCTTCAAAGGATCTCATTGGGATAT
TCGTCTCGGTCTGCACCGGAGCCGGTGGTTCCTAATGTAGTAGATTTTACGGATCCTGCTGTTCTCTGTCGCTCTTTAACACAACGATTAACAAAGTCTAATGGATCGTGTACAGAGAGA
GCGATTAATGCTTTGAAATTCATAAGCAGCAAAGACAATCGAATCGCTAATTGGAGAGATGTTCAAAACAATTTCGCTAATCTTTCTAAAGATGGTTATCTTTGTCGAAGTGATTTTGCT
AATTGCATAGGTTCGACATTATTTCACATTTCTGATGAGTATATTGATTGATTAGTTTGACATTTGGTTGTTTTGTGTTTGAAAGGTTTGGAGAATGAAAATTCGAAAGAATTCGCAGAT
GAGTTGTTCGACGCAATGTGTAGGAGAAGAAGATTAATGGTTGATAAGATCAATCTTCAAGAACTATATGAGTTTTGGTACCAAATTACTGACGAAAGCTTCGATTCTCGTCTCCAAATC
TTCTTCGACATGTATTGATCATTTAATTAATATACTGATACACTTCTTCAACATGTAGTTAAGTTCTTGATTTGTTTTCTTGAAAATTGCAGGGTTAAAAATGGAGATGGTCGAATCACA
GAGAATGAAGTAAAAGAGGTGACTTATTTAGTATTCTAATCAGCATTGACTACGTATAACTAATGAATCTTACATGAGTGCCATTATCTTATATTTTTAGTATTGTATTATCCCTCTTGC
TGAATTTTTTAGTTGGTTATGTTGGTCTTGATATGATTACATCTTATGTATTCTTTCTAAACCAATTAATGCAAGAATAGAAAACATAAGTTGCAATTGTTTTTTCTGCATAATATTTGA
TTGACCTTGTAGTATCTTTTCTTAATTTAAGGAAGTGTTCTAACTACCAATGAGAAGATATTGTTTTTCTATATAACCACTAAGTTTACGTTGAATCTTTCTAATAGAAGCTTCCTTTGG
GCATTAACTTCTTTTTGTATGATTTTGACAACATATAGATCATTATACTAAGTGCATCAGCAAATAATCTATTGAGGTTAAGAGAACGAGCAGAGGAATATGCAGCACTGATCATGGAAG
AACTTGCACCGGATGGGCTCTATTCTCAGTACATAGAGGTGGTTCCATCACTTTTTAAGTAATATCACAATCTTGTAGATCAGTCTCTTTCTATGAGAGAGAGTAGAAGGGTTCTTTGTT
AAGTTTGACCTTAGTAATTGATGACGTTGAGCTCTCTTACCTTCCAAGTACTCTGATGATAGAGACATTTGACCGAGTCAAAAACCAATGAGCTTAAAGTTATGTGCTATGCAAGTTTCT
TTTTGTATGGAATTAATATAAGAAAAGGTTGACGAAGACAAAAAAAGTAGAGGTCCACATATAGAGCTTGAACAAATATTGTTCTCAAAATAATTTCTAGTGGTATAGTGGCGTTTCAGT
TATAGTAACAAATATTGTCAGAGAGAGTGCCCACTTGTTTGAATATTTTTCTCCTGCTTGAGACTGAAACAACATTCTAATATGTTGTCTTTGTTATGGATTTGGAATGATGCAGTTAAA
GGACCTAGAGATGCTACTACTAGAGAAGGACATATCTCATAGTTACAGCCAACCGTTCAGTCAGACGAGCCGAGCCTTAAGCCAAAACCTAAAGGATACAAGATGGGGAATAAGTAGGAA
CTTGCTTTACTCTTTGCAAGACAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTAGTGATCATGGGCTGGTTGTTTATGTGGAAATGCTATCAGTACAAACGCAAAGACGCATTCCA
TGTAATGGGTTACTGCCTTGTCATGGCGAAAGGTGCAGCTGAGACACTGAAATTCAATATGGCTCTTATCCTTTTGCCGGTCTGTAGAAATACCATCACCTATCTCAGATCCACCGCTTT
GTGCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGGTTAATCAAAAACCATTTTGTCTTGCCTTTCTTATGAAAGACAATATGTTTCAGCTGAATCTTACTTTCCGGTTTTT
GCTTAAGCGCAGACGATCTCTGTAGCAATCATTATTGCAATGCTTCTTCATGCATCCAGCCACCTCGCTTGTGACTTCCCGAGGATTCTAACATCTACTGAGACTGATTACAAAAGATAC
TTGGTTAAGTACTTTGGTATTACCAGACCCACATACTTTGACTTGGTGAATAGTCCTGTAGGAATCACTGGTTTTATAATGGTTGCTTTTATGGTAATTGCATTCATATTAGCCAGTCGA
AGATGCAGGCGGAACCTTACTAAGTTGCCAAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTTCTAACTGTTTACGTCCTTTTAGTCATCCACGGT
GTTTCCCTCTATCTCGAGCATAAATGGTACCGCAAAACGGTAAATTCCATAAACTTTTTACCATTACTTTTTGCATTCTTACATAATTTTCTGTAAAAACAATAACATATACTGCCTCCT
TCAGATATGGATGTATCTTGCTGTACCAGTTTTACTCTATATTGGTGAAAGGATCCTTAGATTTTTTCGTTCCAGGCTTTACACCGTTGAAATCTGCAAGGTAAAGTCTCACTACAATTA
CATTTTGAACTGAATCACATGGAAAGACACATTGTCAATCATCTTCCGCTATCTTTATATATCAATTCAAATGATTTGGTCTTAGGTTGTAATTTATCCCGGAAACGTTGTTGTACTACG
CATGACTAAGCCTACATCATTTGATTACAAGAGCGGACAATATGTATTTGTTCAGTGTCCTGCAGTGTCAAAATTTGAGTGGTGAGTGTTTTTATAGTGAGCCAACACAAGCCTAATAGC
TTATTTTGCAATCTAAGAATATATACAAACTCTGTTCTTTGACACCACAAAGAGTAACTTAAAGATTCTTGGTCCTAAACTCCATCTCCAGGCATCCATTTTCTATTACGTCTTCCCCTG
GAGATGATTATCTCAGCATTCACATTCGCCAGCGTGGTGATTGGACAGAAGGGATTAAGAAGGCATTCTCAGTGGTATGTCAAGCCCCTGAAGCTGGAAAAAGCGGACTTCTCAGAGCAG
ACGGACCAAACCAAAGAAGGTACATACATTTTATAGATTTCCATATACTATTAACTTGCATTCTCAGAATGTGAATTTTGATATTATCTCTTGTAATTTAGTTTTCCAGAGCTGTTGATA
GATGGACCTTATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTACTACTCGTTGGCCTTGGAATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAACACCATT
GTTAAGCAACAAGAACAAGCTGTGAGTATAAACTTTAAAAATCCCTGTTGTTGAGTAACAGACTCTTAACTAACTTTTTTTTGTGTTATGTTATATTTTCAGGAATGCCTCTCAGGTAGT
TGTAGTAACAGCAACATCTCATCTGATCACAGTTTCAGTTGCTTAAACTCGGAAGCTCGGAGTCGGATTCCCCAAACTCAACGGAAGACGTTGAATACTAAGAACGCTTACTTTTATTGG
GTAACACGAGAACAAGGCTCGTTCGATTGGTTCAAAGATATCATGAACGAAATTGCTGATTCAGATAGAAAGGTAATATACACTTATTCATGTAAATTCAAAAGATTGAAGTTAGTCACT
GACATATTTGTCTTTGTGAACAAATAAAAGGGTGTTATTGAGATGCACAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACCATGATCCAAACGCTAAAC
CACGCTAAAAATGGCGTCGACATATTTTCTGGAACCAAGGCAATTAATAATCTTTAACGATTACATTTATGATCTTATACAAACAACAATTGATTTCTGATCTTGTATACAACTTTTGGT
TATTTTAGGTAAGGACACATTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGAACGCAAGAATTGGTACGTTACACAAGAATCAACTCAAAGAAATTA
TAATCGAGTCGGTATTTGCCTTGTCTAAAGAATTTGTTTTGATTAGGAGTGTTCTATTGTGGAGTACCGAGTTTGGGGAAGGAACTTTCTACACTCTGCCATGAATTTAACCAGACGGGA
ATTTCCAGGTTCGAGTTCCACAAAGAACAGTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA