RedOxiBase: View Perox 7578

Entry information : AlyRboh08 (AlyRbohH)

Entry ID	7578
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyRboh08 (AlyRbohH)

Name (synonym)

AlyRboh08 (AlyRbohH)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyRboh08 start..stop	S start..stop
AtRboh08	1842	0	1..886	1..886
TsRboh08	1725	0	1..886	1..889
ThasRboh10	1520	0	5..886	7..900
TsRboh10	1508	0	1..886	1..892

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	19358438..19358891	454	N° 2	19359087..19359249	163	N° 3	19359334..19359496	163	N° 4	19359647..19360450	804
N° 5	19360538..19360636	99	N° 6	19360772..19360887	116	N° 7	19360970..19361072	103	N° 8	19361238..19361344	107
N° 9	19361465..19361624	160	N° 10	19361728..19361901	174	N° 11	19362019..19362147	129	N° 12	19362354..19362432	79
N° 13	19362542..19362651	110
join(19358438..19358891,19359087..19359249,19359334..19359496,19359647..19360450 ,19360538..19360636,19360772..19360887,19360970..19361072,19361238..19361344,193 61465..19361624,19361728..19361901,19362019..19362147,19362354..19362432,1936254 2..19362651)

Literature and cross-references AlyRboh08 (AlyRbohH)

DNA ref.	Phytozome 12: scaffold_8 (19358438..19362651)

Protein sequence: AlyRboh08 (AlyRbohH)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	886
PWM (Da):	100482.43	Transmb domain:	i316-333o400-419i455-477o497-519i692-709o
PI (pH):	9.57

Sequence 1195
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MKNNIPTEDSTKWMLESVEIDSMGEGSSKEPEINLNKNEGGLKKNASRNLGVGSIIRTLSVSNWRKSGNLGSPSTRKSGNLGPPTNAVPKKTGPQRVERTTSSAARGLQSLRFLDRTVTGRERDAWRSIENRFNQFSVDGKLPKEKFGVCIGMGDTMEFAAEVYEALGRRRQIETENGIDKEQLKLFWEDMIKKDLDCRLQIFFDMCDKNGDGKLTEEEVKEVIVLSASANRLGNLKKNAAAYASLIMEELDPDHKGYIMWQLEILLTGMVTNADTEKMKKSQTLTRAMIPERYRTPMSKYVSVTAELMHENWKKLWVLALWAIINVYLFMWKYEEFMRNPLYNITGRCVCAAKGAAETLKLNMALILVPVCRKTLTILRSTFLNRVVPFDDNINFHKVIAYMIAFQSLLHTALHIFCNYPRLSSCSYDVFLTYAGAALGNTQPSYLGLMMTSVSITGVLMIFFMGFSFTLAMHYFRRNIVKLPKPFNVLAGFNAFWYAHHLLVLAYILLIIHGYYLIIEKPWYQKTTWMYLAVPMLFYASERLFSRLLQEHSHRVNVIKAIVYSGNVLALYVTKPPGFRYKSGMYMFVKCPDLSKFEWHPFSITSAPGDDYLSVHIRALGDWTTELRSRFATCEPPQAAAKPKPNSLMRMETRAAGVNPHIEESQVLFPKIFIKGPYGAPAQNYQKFDILLLVGLGIGATPFISILKDMLNHLKPGIPRGQKYEGSVGGESIGGDSVSGGGGKKFPQRAYFFWVTREQASFDWFKGVMDDIAEYDKTHVIEMHNYLTSMYEAGDARSALIAMVQKLQHAKNGVDIVSESRIRTHFARPNWRKVFSELSSKHEACRIGVFYCGSPTLVRPLKELCQEFSLESSTRFTFHKENF

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 8, 12 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAAAAATAACATTCCTACCGAGGATTCGACAAAATGGATGTTAGAGAGTGTAGAGATCGATTCAATGGGTGAAGGTTCGTCCAAAGAACCCGAAATTAACCTCAACAAGAATGAAGGT
GGTCTGAAGAAGAATGCGTCAAGAAATCTCGGCGTGGGATCGATAATCCGAACGTTAAGCGTTTCAAACTGGAGAAAGAGCGGGAATCTAGGCTCTCCGAGCACAAGGAAAAGTGGGAAC
CTGGGGCCTCCGACCAATGCCGTGCCCAAGAAGACAGGTCCACAAAGAGTGGAGAGGACAACATCTAGCGCCGCTAGGGGACTTCAGAGCTTACGGTTCCTTGATCGGACAGTCACCGGA
CGAGAACGAGATGCATGGAGGTCGATTGAGAATCGATTTAATCAGTTTTCTGTCGATGGCAAATTGCCTAAAGAGAAATTCGGCGTCTGCATTGGTAATTGATAGAAGTACTAATAGTTT
AAAAGTGTTCCACATATTATATGTCAGATCCTTTTTGATTCATCGTGATTTTTTTTGGAAACGATGACTCTTTTTGACATAGGTATCTTCAAGTTGGATTATTAACGACGATTTTTTTTG
TATTGTTGGTTTAAAAATAAAATTTAACGTTGATGGTATACATTACTAGGAATGGGAGACACGATGGAGTTTGCTGCAGAAGTTTATGAGGCATTGGGTCGGAGAAGACAAATAGAGACA
GAAAACGGTATCGACAAAGAACAACTCAAGCTGTTTTGGGAAGACATGATCAAGAAAGACCTTGATTGTCGTCTTCAGATCTTTTTCGACATGTAATTTACTTAATCTTATATGTTTCCA
TATATATACAAGTGCGCTTAATTGATTTAGGCATTATGGTTGTGGTTGTTGTTTAGGTGTGACAAGAACGGAGATGGTAAGCTCACAGAAGAGGAAGTGAAAGAGGTCATAGTCTTGAGC
GCCTCCGCGAACCGCCTAGGGAATTTGAAAAAGAACGCTGCGGCTTACGCGTCTTTGATCATGGAAGAACTCGACCCCGATCACAAAGGATACATAGAGGTTCACTTTTTCTTTCTATTT
TTAATATCCGTTTGATATAACAGTCGAATATATAATATTCTTTCAAAATTCAAACGATTTTTTTTTATACCTTATCCAGACAAATATAGAGATTTATGTTCTAACCATTTCGTAGTTTAT
ATCTACCAGATGTGGCAGTTAGAGATACTATTAACAGGAATGGTGACAAACGCTGATACAGAGAAGATGAAGAAATCTCAAACGCTGACACGCGCAATGATCCCAGAGCGTTACAGAACG
CCGATGAGCAAATACGTTTCAGTAACCGCAGAACTGATGCACGAGAATTGGAAAAAATTATGGGTACTCGCTTTGTGGGCCATCATCAACGTCTATCTATTCATGTGGAAGTACGAAGAG
TTTATGAGAAACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCAGCTAAAGGTGCGGCCGAAACGCTGAAACTCAACATGGCTCTGATTTTGGTCCCGGTCTGTAGAAAAACCCTA
ACGATCCTTAGGTCAACGTTTTTGAACCGTGTGGTCCCATTCGACGACAACATAAACTTCCACAAGGTGATTGCGTATATGATCGCGTTCCAGTCTTTGCTTCACACGGCACTTCACATC
TTCTGTAACTACCCTAGGTTAAGCTCGTGCTCTTACGACGTGTTCTTGACGTACGCGGGAGCTGCCTTGGGAAACACGCAACCGAGTTACCTAGGTTTAATGATGACGTCAGTGTCGATC
ACGGGAGTTTTAATGATATTCTTCATGGGATTCTCGTTTACACTGGCCATGCATTATTTTAGAAGGAACATAGTGAAATTGCCTAAACCGTTTAACGTTCTTGCTGGGTTTAATGCGTTT
TGGTATGCTCATCATTTGTTGGTTCTTGCTTATATTCTTCTCATCATCCATGGTTACTATCTTATCATCGAGAAGCCTTGGTACCAGAAGACGGTAAGTAAGATGTATTTTTTTAATATA
GAATATTTGTGCATTATCATTTTTAAAATCCTTTTTTTTTGTTGGTAAATTGAAATGCAGACATGGATGTATTTGGCCGTGCCGATGCTGTTCTACGCGAGTGAGAGGCTATTCTCACGT
CTCCTTCAAGAACACAGCCATCGTGTCAACGTTATTAAGGTACTAAAAAAGGCTAATTAATTCATCAAAATATTTACGATAACATTTCGTAATGACTAATTTTGGGCCTATATATAGTAG
TTTTTAATAAATTTGTTTTTTTTTTCCATGTTTTCTGTCACTTTTATTATGTAGGCTATTGTATATTCGGGCAACGTTCTTGCACTTTACGTAACCAAACCTCCAGGGTTCAGATACAAA
AGTGGCATGTACATGTTTGTCAAGTGTCCTGATCTCTCAAAATTTGAATGGTAATCTAAATAATACTAAATACTTGATTAAAGTTCATACTTTAAGTAACTAGTGATATTTATTTTACTT
TATTATTATTAGGCATCCGTTCTCAATCACTTCTGCACCAGGAGATGATTATTTAAGTGTTCACATTAGAGCCTTGGGAGATTGGACCACTGAACTTAGGAGCAGATTCGCAAAGGTAAT
TGTCACTCTTTATTTTTCTAATTAAAATTTTCACTGTACTTGTAATATTGGTCTTTCATGGTAATTATCCTAGCTAACATAAATCTTATTTTATCAGAGGTTAGAAAACATAAAATTTAA
TTTAAGTGTAAATTATTAAAAAAATTCTGTTTGATTGTAGACATGCGAGCCTCCTCAAGCAGCCGCAAAACCTAAACCAAACAGTCTTATGAGGATGGAAACAAGAGCTGCGGGTGTGAA
TCCTCACATTGAAGAATCACAAGTCTTGTAAGTGAATACTAAACTAATAACTACCAACTAAATGCATATTATTTTGCAAGAAGATGAGTATGTTCATATAAACGGTGTTTTTAAATTGGA
TCTGATCGAGTCGTTTTTTCGTAACAGATTCCCAAAAATATTCATCAAAGGACCTTATGGAGCTCCGGCACAAAATTATCAGAAGTTCGATATCCTCTTACTAGTTGGACTAGGGATAGG
GGCAACTCCATTCATAAGCATTTTGAAAGACATGTTAAACCATCTAAAACCTGGGATTCCCAGAAGTGTAAGTAGTATGAACATTTTTGTCTTCATATTTGAGGTTGCATATGAAGGAAA
AGAATCATAATGGGGGTCTACATTTTTTGAATATTGGGAAATATATATAGGGGCAAAAGTACGAAGGAAGTGTAGGAGGAGAGAGTATAGGAGGTGATAGTGTTAGTGGTGGAGGAGGAA
AGAAGTTTCCGCAAAGAGCATATTTTTTTTGGGTGACAAGAGAACAAGCTTCCTTTGATTGGTTCAAGGGAGTTATGGATGACATCGCCGAGTATGATAAAACCGTAAGTTTATTGATTC
ATTTTACTACATTCTTGTTTTTTTCATAATGGGGTTTATGAATTGCTATAACAAAATAATACGTTTTACAAGTTTCCCAAATAATGTTTTTATTTTGGCAGCATGTGATAGAAATGCATA
ACTACTTAACAAGCATGTACGAAGCGGGAGATGCAAGATCTGCCCTAATCGCCATGGTTCAGAAACTTCAACATGCCAAGAACGGTGTTGATATTGTCTCCGAAAGCCGGGTAAGTTTTA
GTTAATAACCAAAACCATTATATGAGTTCTCCACTTTAGATTTCGGTTTAAGAACATATTGAATCATTTTGGAGTTAACGTTAAGCACTCCTAAAGGACTTACAAGTATCTTACTTATAT
TAGCACTCCTTAAGGAGTTACAAGTATTTTAATTATATAATTAATTAATCTTATGTATCCTATAAAAACAAATCAGATACGAACACATTTCGCAAGACCTAATTGGAGGAAGGTTTTTTC
TGAGTTATCAAGCAAACACGAAGCTTGTCGAATAGGTAATTATATATTAAATAGTTATTGTCAACCTTTCTTTTACTCTGTAAACGATCTTAATTTGCTTAAAGCTTTCTACTTTCAAAT
AATTCTTACCTTGTGTATTTTCAGGTGTATTCTACTGTGGAAGTCCAACACTGGTTCGACCACTTAAAGAACTTTGTCAGGAGTTTAGTCTCGAGTCTTCCACTCGTTTTACTTTCCACA
AGGAAAACTTTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA