RedOxiBase: View Perox 7579

Entry information : AlyRboh05 (AlyRbohE)

Entry ID	7579
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2015-12-10 (Catherine Mathe)

Peroxidase information: AlyRboh05 (AlyRbohE)

Name (synonym)

AlyRboh05 (AlyRbohE)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyRboh05 start..stop	S start..stop
AtRboh05	1756	0	16..925	16..952
TsRboh05	1641	0	16..925	16..951
ThasRboh05	1376	0	1..925	27..946
VvRboh07	1246	0	4..925	5..917

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	8134541..8135213	673	N° 2	8135300..8135459	160	N° 3	8136391..8136439	49	N° 4	8136519..8136632	114
N° 5	8136716..8136800	85	N° 6	8136879..8137141	263	N° 7	8137251..8137634	384	N° 8	8137727..8137822	96
N° 9	8137906..8138021	116	N° 10	8138104..8138277	174	N° 11	8138360..8138513	154	N° 12	8138592..8138783	192
N° 13	8138865..8138993	129	N° 14	8139075..8139153	79	N° 15	8139345..8139454	110
join(8134541..8135213,8135300..8135459,8136391..8136439,8136519..8136632,8136716 ..8136800,8136879..8137141,8137251..8137634,8137727..8137822,8137906..8138021,81 38104..8138277,8138360..8138513,8138592..8138783,8138865..8138993,8139075..81391 53,8139345..8139454)

Literature and cross-references AlyRboh05 (AlyRbohE)

DNA ref.	Phytozome 12: scaffold_1 (8134541..8139454)

Protein sequence: AlyRboh05 (AlyRbohE)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	925
PWM (Da):	104466.15	Transmb domain:	o363-385i504-526o546-568i727-744o
PI (pH):	8.37

Sequence 1282
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MKLSPLSFSTSSSFSHADGIDDGVELRSSPFAGGAMLPVFLNGLSRNSGESGSSSWERELVEVTLELDVGDDSILVCGMSEAASVDSRPRSVDLVTARLSRNLSNASTRIRQKLGKLLRSESWKTTTSSTAGERDRDLERQTAETSGIMTARDRRREDAILQRSTSSAQRALKGLQFINKTTRGNSCDCDWDCNCDQMWKKVEKRFESLAKEGLLARDDFGECVGMVDSKEFAVSVFDALARRRRQKLEKITRDELHDFWLQISDQSFDARLQIFFDMADSNEDGKITREEIKLLMLSASANKLAKLKEQAEEYASLIMEELDPENFGYIELWQLETLLLQRDAYMNYSRPLSTTSAGVNNWQRSWVLLLWIMLMAILFVWKFLEYREKAAFKVMGYCLTTAKGAAETLKLNMALVLLPVCRNTLTWLRSTRARACVPFDDNINFHIIACAIAIGILVHAGTHLACDFPRIINSSPEEFALIASAFNGTKPTFKDLMTGAEGITGISMVILTTIAFTLASTHFRRNRVRLPAPLDRLTGFNAFWYTHHLLVVVYIMLIVHGTFLFFADKWYQKTTWMYISVPLVLYVAERSLRACRSKHYSVKILKVSMLPGEVLSLIMSKPPGFKYKSGQYIFLQCPTISRFEWHPFSITSAPGDDQLSVHIRTLGDWTEELRRVLTVGKDLSTCVIGRSKFSAYCNIDTINRPKLLVDGPYGAPAQDYRSYDVLLLIGLGIGATPFISILKDLLNNSRDEQDNEFSRSDFSWNSYTSSYTTTTPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVMEEISDMDCRGQIELHNYLTSVYDEGDARSTLIKMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSSIARKHPNSTVGVFYCGIPTVAKELKKQAQDMSQKTTTRFEFHKEHF

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 1, 14 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAAGTTATCGCCTCTGAGTTTCTCTACGAGTTCGAGTTTCAGTCACGCCGATGGAATCGATGACGGTGTTGAGTTAAGATCATCTCCATTTGCCGGCGGCGCAATGCTGCCGGTTTTT
CTCAACGGTTTGAGTCGTAACAGTGGAGAATCCGGAAGTAGTAGCTGGGAAAGAGAGCTCGTGGAGGTGACGTTGGAGCTTGACGTCGGCGATGACTCCATACTCGTTTGCGGAATGTCG
GAGGCGGCGTCTGTTGATTCTCGGCCGAGATCGGTGGATTTAGTAACCGCGAGATTGTCGAGGAATCTATCGAATGCATCTACGAGAATCCGGCAGAAACTGGGGAAATTACTGAGGTCG
GAATCTTGGAAAACGACGACGTCTTCTACCGCCGGCGAGAGAGATAGAGATCTCGAACGTCAGACGGCGGAGACTTCGGGAATTATGACGGCGAGGGATAGACGGAGAGAAGACGCGATA
TTACAGCGATCAACGTCGAGTGCGCAAAGAGCGTTAAAAGGATTACAATTTATCAATAAAACCACGAGAGGAAACAGCTGCGACTGCGATTGGGATTGCAATTGCGATCAGATGTGGAAA
AAAGTTGAGAAACGATTCGAATCGCTTGCTAAAGAAGGACTACTCGCGCGAGACGATTTTGGCGAGTGCGTTGGTAAGTCAAAGAAAAATCGAATATGGACCAATCCACTCATTGCCAAA
TTAATATAACAAACTATATATGTTTTGAAATTTTTAAAGGGATGGTGGATTCGAAGGAATTCGCGGTCAGTGTATTCGACGCTTTGGCTCGAAGAAGGAGACAGAAACTGGAGAAGATAA
CGAGAGATGAACTTCATGACTTCTGGTTACAGATTTCTGACCAAAGCTTCGACGCCCGTCTTCAAATTTTCTTCGACATGTACGTGTCTTTGATTCTCTCTTTCTATTTTATTTTAAAGT
CAAGTTTTGTTTTGTCTTTACGTTTATAACTGTTACGGGAATAACGCATTGCAATTAGCAAAAGCATAAGAAAACAAGTGTATTGATCCAAGTGCAACGAATATTAATCAGTTGACGTTA
ATCATTGAAGAAAACTTTATCTGTAATTGATAATTAGTTTTTTAGTATTCCGAATTCTGAATAATGTAGATGAAGTTTGATCAACTTGCAGTTTTATAAGATTGGACTAATTTTTGTTTT
TTGTGGTATTTTATCAAGTTTAGCTGATTAAATCAAATATTGAGTAAAAAATTAATGTTGTTGATTAAAGATAATGTTAGCTTACCAATCATTTCTTTGATTGGAATTTGTTATCTCTTT
AGTGAGAACTACCGCAACTTCACAATAATTTTCTACAATTTTGGGAATTATTAGGCATAAATTAAAAACATGTGTTGGTTAAGCTGAATTGTGATTGTTTCAAGGCAAATGTTTCACTGA
TATCATATTTTTGTAGAGAGATAGATACATCATTTAAATCACGTGGTGTTTTTAGCCGTTGGATCTGGTAGTTCACGCAATCAACGGTGAAAATGGTCTAATGTGTTTAAAGAATGGGCT
GTAGTTTACTTGGCCCAGTAAAACCAACTTTTACCAAATTTCCAAAAAAGTTTTCTTCTTTCAGCTTTCTCCCCGCAATAAGTTACTTGCAAGTCTTAAACTACACACCAGATGCCAAAA
TGAGTTTTCAATTTTTTTTTGCCAAACATTTAATTCAGTAAAATTATGGTTACTCAATTCATTTCGTTATTCTGTCATTTTTTTTGGTTTAACGATTATACAATTCTGTTATAATTGCAG
TGTTACTAATACAAAAAAGATGCTAATATCTAGTACCGGTTTTGTCACAGGGCTGATAGCAACGAAGATGGGAAGATCACTAGAGAAGAAATCAAAGAAGTAACTTTCTTTTTCAACACC
GAAAATTACGTTTGAAACAATCATATGTCTCTAACAACTCTTATGATTTGAAACGCAGCTTTTGATGCTAAGTGCATCAGCAAACAAGTTAGCAAAACTCAAGGAACAAGCAGAAGAGTA
CGCATCTCTGATCATGGAAGAACTTGATCCAGAGAATTTTGGATACATTGAGGTTCAAAACATTATATGTCATCACTCTTCAAACACACTATCGATGATTTTGTTTTGTTTTCTAACCTT
TTTGTGTTGTTTCAGTTATGGCAACTCGAGACACTCTTACTTCAGAGAGACGCATACATGAATTACAGTAGACCGCTTAGCACAACAAGCGCTGGAGTGAGTACACCAAGACGGAATCTA
ATCAGACCTCGTCATGTGGTTCGAAAATGTAGAAAAAAACTTCAGTGTCTGGTTCTAGATAACTGGCAAAGAAGCTGGGTTCTTTTGCTGTGGATCATGCTTATGGCCATCCTATTCGTC
TGGAAGTTTCTTGAGTACAGAGAGAAAGCTGCGTTTAAGGTCATGGGGTATTGTTTAACCACTGCTAAAGGAGCTGCAGAGACTCTTAAGCTCAATATGGCTCTGGTTTTATTACCTGTC
TGCAGAAACACATTGACTTGGCTAAGATCTACACGCGCTCGAGCTTGTGTTCCTTTTGATGACAACATCAATTTCCATAAGGTAAAAGTACAATACAACCTTCCTTCAGTCTTTCGATTT
CTCAGTTTTCATCAATACAACACTTGAGATCAACTCTTTCTCTCTCTCTGTTGTCCCGTTTGTGTGCCAGATTATTGCTTGTGCCATAGCGATTGGGATACTTGTTCATGCTGGTACTCA
TTTGGCGTGTGATTTCCCCCGGATTATAAACTCGAGTCCAGAAGAATTCGCCTTGATTGCTTCTGCCTTCAATGGTACTAAGCCCACATTCAAAGACCTGATGACAGGTGCAGAAGGAAT
CACTGGGATCTCGATGGTGATCTTGACAACCATCGCATTCACATTAGCATCAACTCATTTCAGGAGAAACCGTGTGAGGCTTCCGGCACCACTTGATCGGTTGACTGGCTTTAACGCATT
CTGGTACACTCATCACCTTCTAGTGGTTGTCTACATCATGCTCATTGTCCACGGTACCTTCCTGTTCTTTGCTGATAAGTGGTATCAGAAAACTGTAAGCATCAGCAAACATAATCGCTC
TTTACTTTAAACCGAAATGCCAAATTTCTAGAAACCTAAATTATTGTTGATTACCGGTGTCCTCAGACTTGGATGTACATCTCGGTTCCTTTGGTGCTCTATGTGGCAGAACGAAGTCTG
CGAGCTTGTAGGTCAAAGCATTACTCTGTCAAAATCCTCAAGGCAACTACCACAAACCCAGCAAATTCATTCCTGTTAAAAGGTGTTTTAATAACAAAATAGACCTTTCAATATGATCTC
TGCAGGTTTCTATGCTACCTGGAGAAGTACTCAGCTTAATCATGTCAAAGCCTCCTGGATTCAAGTACAAGAGCGGTCAATACATATTCTTGCAGTGTCCAACTATCTCTCGATTTGAAT
GGTGAGTACTGATACCGACTTCCCATAGTGTTAACAAACATCTCAGGTTCCACTCAAAAAAGATATTCCCTAAACTTTTCCAGGCACCCATTTTCTATTACCTCTGCACCAGGAGATGAC
CAACTTAGTGTTCACATCCGAACACTCGGAGACTGGACAGAGGAGCTACGACGAGTTCTAACTGTGGGCAAAGATCTTTCAACATGCGTGATTGGGCGTTCAAAATTCTCTGCCTATTGC
AATATTGATACAATAAAGTATATTTCCAGACACCTTTGCTTTCTCTTTTCTACACTTGGAAACCTAGTATTAACATGCTTGTTGATCTTGCATTGGCAGCCGACCGAAATTACTAGTAGA
CGGCCCATATGGAGCTCCAGCACAGGACTACAGAAGCTATGATGTCTTACTCCTCATTGGATTGGGAATAGGAGCTACTCCTTTCATAAGTATCCTGAAGGATCTCCTGAACAATTCAAG
AGACGAACAAACAGTAAGTCCAATTCAGTGCACCAGAAAAGTTAGTCTTTTCAAGAACCAAATACATATCTCTTAACTTTCAATGGCACAGGACAATGAATTCAGCAGATCGGATTTCAG
CTGGAATAGCTATACCTCTTCATATACCACAACAACCCCAACTTCAACACATGGAGGGAAAAAGAAAGCAGTGAAGGCTCACTTTTACTGGGTCACAAGGGAGCCAGGATCCGTTGAATG
GTTTAGAGGAGTAATGGAAGAAATATCAGACATGGACTGCAGAGTAATAACACCAGCATATCATTCATTTTCATCACCACTTTAACGTTGATCGATATTCTAACATACTCATCTCGTAAT
ACAGGGCCAGATTGAGTTGCACAACTACCTTACAAGCGTATATGATGAAGGTGATGCAAGATCAACCCTGATAAAAATGGTTCAGGCTTTGAACCATGCCAAACATGGAGTTGATATTCT
ATCCGGAACACGGGTAAGAACTGTTGCAGGGCATATAACCAGAAACTATTTCCCAATACTACCTATAACTGACAAGATAACATCATTCCAACAGGTGAGAACACATTTTGCAAGGCCCAA
CTGGAAGGAAGTCTTCAGTAGCATAGCAAGAAAGCATCCAAATTCGACAGTCGGTAAATATTCTATACAATCAGCTGCTTACCAACAAGACATCTGATAAACCTCTCTTCTAGGACTAAT
GAATTAGTACCATTGGAAAAGAAAGAAAATTTAGCAATAAGAATTAATGACACAGGCAAACACATGAACCTATTTAGGCCAGGTATTACGAAGGATATGTGAAAACCATTTATTAACTGT
GCAGGCGTGTTTTACTGCGGCATACCAACCGTGGCAAAGGAGTTGAAGAAGCAAGCACAAGACATGAGTCAAAAAACAACCACACGGTTCGAATTCCATAAGGAGCATTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA