View Redoxidase 7584

Entry information : AlyRboh06 (AlyRbohF)

Entry ID	7584
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyRboh06 (AlyRbohF)

Name (synonym)

AlyRboh06 (AlyRbohF)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyRboh06 start..stop	S start..stop
AtRboh06	1928	0	1..941	1..944
TsRboh06	1803	0	1..941	1..943
NoffRboh06-1B	1800	0	1..941	1..941
NoffRboh06-1A	1794	0	1..941	1..940

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	484383..485037	653	N° 2	484155..484314	158	N° 3	483548..483596	47	N° 4	482952..483065	112
N° 5	481856..482278	421	N° 6	480674..481060	385	N° 7	480500..480595	94	N° 8	480285..480400	114
N° 9	480044..480211	166	N° 10	479810..479969	158	N° 11	479544..479723	178	N° 12	479322..479450	127
N° 13	479106..479184	77	N° 14	478784..478893	108
complement(join(478784..478893,479106..479184,479322..479450,479544..479723,4798 10..479969,480044..480211,480285..480400,480500..480595,480674..481060,481856..4 82278,482952..483065,483548..483596,484155..484314,484383..485037))

Literature and cross-references AlyRboh06 (AlyRbohF)

DNA ref.	Phytozome 12: scaffold_2 (485037..478784)

Protein sequence: AlyRboh06 (AlyRbohF)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	941
PWM (Da):	107943.44	Transmb domain:	o385-404i463-482o523-545i566-588o592-609i745-762o
PI (pH):	9.55

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MKPFSKNDRRRWSFDSVSAGKTAVGSASTSPGTEYSINGDQEFVEVTIDLQDDDTIVLRSVEPATTAIGDISDDTTGIMTPVSISRSPTMKRTSSNRFRQFSQELKAEAVAKAKQLSQEL
KRFSWSRSFSGNLTTTSTAANQSGGGGGLVNSALEARALRKQRAQLDRTRSSAQRALRGLRFISNKQTNVDGWNDVQSNFEKFEKNGYIYRSDFAQCIGMKDSKEFALELFDALSRRRRL
KVEKINHDELYEYWSQINDESFDSRLQIFFDIVDKNEDGRITEEEVKIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGL
RKKSRIHRMSSDFVYFMQENWKRIWVLSLWIMIMIGLFLWKFFQYKQKDAFHVMGYCLLTAKGAAETLKFNMALILFPVCRNTITWLRSTRLSYFVPFDDNINFHKTIAGAIVVAVILHI
GDHIACDFPRIVRATEYDYNRYLFHYFQTKQPTYFDLVKGPEGITGILMVILMIISFTLATRWFRRNLVKLPKPFDRLTGFNAFWYSHHLFVIVYILLILHGTFLYFAKPWYVRTTWMYL
AVPILLYGGERTLRYFRSGSYSVRLLKVAIYPGNVLTLQMSKPTQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPEDDYVSIHIRQLGDWTQELKRVFSEVCEPPVAGKSGLLRADETTK
KSLPKLLIDGPYGAPAQDYRKYDVLLLVGLGIGATPFISILKDLLNNIVKMEEHDSISDFSRSSEHSTGSNGDPPRRKRILKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMH
NYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLTKLSSKHCNARIGVFYCGVPVLGKELSKLCNTFNQKGSTKFEFHKEHF

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 2, 14 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAAACCGTTCTCAAAGAACGATCGGCGACGGTGGTCATTTGATTCAGTTTCCGCCGGAAAAACCGCCGTCGGAAGTGCATCTACTTCACCGGGAACTGAATACTCCATTAACGGTGAT
CAAGAGTTCGTTGAAGTCACAATCGATCTTCAAGACGATGACACAATCGTTCTTCGTAGCGTCGAGCCAGCAACTACCGCCATTGGAGATATCTCCGACGACACAACCGGAATAATGACT
CCGGTTTCGATTTCTAGATCTCCGACGATGAAACGGACTTCATCGAATCGGTTCCGTCAATTCTCTCAAGAGCTTAAGGCGGAAGCTGTGGCCAAGGCGAAACAGTTATCCCAGGAGTTG
AAACGATTCTCGTGGTCTCGTTCTTTTTCAGGCAATTTAACCACCACCAGTACCGCCGCTAATCAAAGCGGCGGCGGTGGTGGTTTGGTAAACTCTGCTTTAGAAGCTCGAGCGTTGCGA
AAACAACGAGCTCAGTTAGATCGGACTCGGTCTAGTGCTCAAAGAGCTCTTCGTGGTTTGAGATTCATCAGCAACAAGCAAACGAACGTTGATGGTTGGAACGATGTTCAATCAAATTTC
GAAAAATTCGAAAAAAATGGTTACATCTATCGCTCCGATTTCGCTCAATGCATAGGTAAACTCCATAATCTCTAGATTTTGAATTTACTCAAATCTTGATTTGTTTTTTTTTTTTGTTCA
TAGGAGAATGAAAGATTCTAAAGAATTTGCATTGGAACTGTTCGATGCATTGAGTAGAAGAAGAAGATTAAAAGTTGAGAAAATCAATCACGATGAGCTTTATGAGTATTGGTCACAAAT
CAACGACGAAAGTTTTGATTCTCGTCTCCAGATCTTCTTCGACATGTACGTAACAGAAAAGTTACTTACACTTAATAATTAGTTTAATTTTAATTACTGATCTCCTAATCATCTTTTGTT
TCTAATAATAATGATTAGTACTCCCTCCGTTTCATAATATAAGTCGTTTTAGGTTAAAGCACGCGGATTAAGAAGTTCTACTTTTTAAAAATTCAACCAATCATAAAAGAGACTGCATAA
TATAAATAATCATAAAATATTAAAATAATATATAATTTGCATTAAAACTCGAAAACGACTTATATTATGAAACAAATTTTTTTATCTAAAACGCCTTATATTATAAAACGGAGGGAGTAT
CTTATAAAGGTTCCTTATAATCATTTTACTATAAGAAAGAACGATCCCATATTTTCAGTGTTCTTAAATAATTAAACAGTGTGGTAATTTAATTTGCATGTGTGGAGAAATTATTGTTCC
TTACTATGCGTATGTTTTAATTTTTATACTGTATTTTTTTTAATATAAACCTTTTGACTTTAATTGAAGATAATTAATACATAATTAAGAGCTAATCTCCTTTTATTTGTTGGGAATTTA
CAGAGAGTGGACAAGAATGAAGATGGGAGAATTACAGAAGAGGAAGTAAAGGAGGTAAATAAATGATGATAGCTAATCAACACAATTAGCGTTATCAATTTTCATTATTTAATTACATGT
CATAATTTTATCGTTAAATTTTAAAGTAAAATATAAACTTGGGACTGGTAGTCAAAATATAATTTTATATTTATAATCAAAGTTAGGCGGGGATTTGGTGACCTTAAATCTTATGAAATG
CTGATATACTAACCACTCCATTTATTTAAAAAAAAAAAATCAAAAGAACCAAAATACGAATTTTCTTGTCTTGATTTTAACCCATGTTCGTTAGATTCCTATCTGTAACTAATTAAGTTG
GCATTTATGTTGAAATATGTTACTATTGTTTAATTAGTTTTGACTAATAATCAACTTGTTTTAATATAATTTAATCTTTGACGGTGACACAAAATACAATAGAGATGGTTTACTTAACAT
TTTGAAGAAAAAATCCTTATTATCGTTTTTTTTTTTTTTTTCTTTGAATATTTTAGATATAATAATGTTGAGTGCATCTGCAAATAAGCTATCAAGATTAAAGGAACAAGCAGAGGAATA
TGCAGCTTTGATTATGGAAGAGTTAGATCCTGAAAGACTTGGCTACATAGAGGTTGGTTTTTGATACACTGTACAATCTTTAATATGTTACAAAAAATAAATTAAATTTAAATACATTTC
CACAATCACATGCTTTGTTTCCGTGCTTGCATGATGTGAATATTATATTATTACAGATTTTTTTTTTTGTTCAACATATTATTGCAGAATTTTTTCAATACTTTCGTTACACAAACGGAA
TAAAGTATGTTAAACCGCCGCCCATAAATGGGAATTCAATTTTTTTATATATAATGTATGACCTCTTTTATCAAAAAAAAAAAAAAAATGTATGACTTCACATGTTATGAGGAAAAAAAG
GCCAATTTTACAATAGCATTAAATTATTTCATGTTTGCTTTTTTTCTACTCTTATCTCATCTTGCTGACACCTAGTATAGTTGTCCATTATAAAGTATAGATTCTTCTATTCAGTAGTTC
AAATATAGTATATTTTCTTTTTTTCCAATTCATTTACTTGATGGTAGGTGAAGTAGTTACAATAAACTATTTCAGCTGCTAGCGAAAATAGAAGATAGAGTTTGAAAAAAAAAAACATGT
GACTGCTACATCTTGAATGATATATAATATATTTATCTAACTCATGAGCATGTTAAGATTATGATTCATTAAGGCAAATATTTCACACTTTAATGCTATTTTTTTTGGTTTTTTTTTTTG
TGTAGCTCTATGGCAACTAGAGACTTTGCTTCTACAAAAAGACACATACCTCAATTACAGTCAAGCATTGAGCTATACAAGCCAAGCATTGAGCCAAAACCTTCAAGGGTTACGAAAAAA
GAGTCGAATACATCGAATGAGTTCGGATTTCGTATATTTCATGCAAGAGAATTGGAAAAGGATATGGGTTTTATCCTTATGGATCATGATCATGATCGGATTATTCTTATGGAAATTCTT
CCAATACAAGCAAAAAGATGCATTTCATGTGATGGGTTATTGTTTACTCACAGCAAAAGGAGCAGCTGAGACACTTAAATTCAACATGGCTCTAATACTTTTCCCGGTTTGCAGAAACAC
CATTACCTGGCTTAGATCCACAAGACTCTCTTACTTCGTTCCTTTTGATGATAATATCAATTTCCACAAGGTTAGTGAACTATAAACCCTTTTTTGTTGTTTTTTTACTTTGATTTCTAC
TTTTTAGCATTTTTTGGGGGTCCCATAAGAACTTTCTTTTGGTGCTTCTATAGAAGTCAAAACCAATACTAATTAGAGAGATACAAAATCCTCATCGAACGCAATGTGCTGTCGAAAAAG
CTGAGATTGTTGTGGGGCTCATTTTCTTTGTGCACGCACTGGAACATTGACATGACAGCTAAACAACGCTTTCTCCTCTTTTTTTTTCTTCTTCTCATTTCTTACATTTTTTTGCAAAAA
AGAAAAGTGAATAAGAAGAGTAAGCCATGTGAATTTTTGGTTCGGTTATACCGAATTCAGTTTGAAATTCTTTCATCTCGATTTTGCAATAAAAAGACAACCTCCTATGCAGTTCTTGAA
AGTTTTATATCTATTTTGGACCAAAATTTTGTTCAGTTTGAAAAGAATCAGTTTGGTTCTGTTTTGCAGAAAAGACAACTTCAGGTTCAATTTTATAAAATTAACATTATCTGTTTATTT
ACATTCTATGTAGTACATGAAATTAAATTTGTGTGTAATATTATATTTACAACAGTTTATTGCAGTTTATTTAATTTGGTTTTGTTGCATTAGCTTGGTTTCAGATGGGGTTTTTGGATA
TTTTTCGGTTTGGTATTGGTTAAGAAAAAACTTATTTATTTGATATTTTCAACGTTCATAAGCTAAGAAGCCAATGCTCAATTACTACTAATAAAACTATTTTGATGGAAATTTTTAACT
CACTACTCTTTTTTGTTCTGTGCAGACACAATTGCCGGAGCCATTGTAGTAGCTGTGATCCTTCATATTGGAGACCATATTGCTTGTGATTTCCCTAGAATTGTTAGAGCCACTGAATAC
GATTACAATCGGTATCTGTTTCATTACTTTCAAACAAAACAGCCAACATACTTCGACCTCGTTAAGGGACCTGAAGGAATCACAGGGATTTTAATGGTCATTTTGATGATTATTTCATTC
ACATTAGCAACAAGATGGTTTAGGCGTAACCTCGTCAAGCTTCCTAAGCCATTTGATCGACTTACCGGTTTTAACGCCTTTTGGTATTCGCATCATTTGTTCGTCATTGTTTATATCTTG
CTTATCCTTCACGGTACCTTCCTCTATTTCGCCAAGCCTTGGTATGTTCGCACGGTAAGTCTCTATGATCCTAATTCTAAGCTATATACCTAAGTGTTCTTGGTTTTGATTTTGAGATGT
TGTGTTTTGCAGACACATGGATGTATCTTGCGGTACCAATTTTACTCTATGGGGGAGAAAGAACACTTAGGTATTTCCGTTCTGGTTCTTATTCGGTTCGACTTCTTAAGGTAAGTGAAA
AACAAAAACTAAAACAGAGGACTCTGTTTTCTTTATTTTTACTCATTGCCTTGTAGAAAAAGCTAACTTCTTTTGATTTTTCCTTCTAGGTGTTGCTATATATCCCGGTAACGTTCTAAC
GCTGCAAATGTCGAAACCAACTCAATTTCGATACAAAAGCGGACAATACATGTTCGTCCAATGCCCTGCAGTTTCGCCATTCGAATGGTAAAAACTATTCATATCAGTTTTTGATACTAA
TCAAATAATCTGTCTTATACTAATTTGTATTTCGGTCTAGGCGCATCCATTCTCAATTACTTCAGCACCAGAAGATGATTATGTCAGCATTCACATTAGACAACTCGGAGATTGGACTCA
AGAACTCAAAAGAGTATTCTCTGAAGTTTGTGAGCCACCAGTTGCTGGTAAAAGCGGACTTCTCAGAGCCGACGAAACAACAAAGAAAAGGTATAACACGAAAACAAAACCATACACTTA
TAAGTTAACCAAATGCTGATATGTTTAGTTAAATGTTGTTTCAGTTTTTGCCAAAGCTATTGATAGATGGACCATACGGTGCACCGGCGCAAGACTATAGGAAATATGATGTTCTCTTGT
TAGTTGGTCTTGGCATTGGTGCAACTCCATTTATCAGTATCTTGAAAGATTTGCTTAACAACATTGTTAAAATGGAAGAGCATGCGGTAATAAACTAAGTCTTATCTTCTTCTCTTTTGT
GCAAACAATTATAATACAGCTGGAAATCTGATAAATGATTTTACATCTTCAGGAGATTCGATCTCGGATTTCAGTAGATCATCAGAACACAGTACAGGAAGCAACGGTGACCCGCCAAGA
CGGAAAAGAATACTAAAAACCACAAATGCTTACTTCTACTGGGTCACAAGAGAACAAGGCTCTTTTGATTGGTTCAAAGGTGTCATGAATGAAGTTGCAGAACTTGATCAACGGGTAAAA
AAGAAACTCAAAACATTTCTTGACACAATCAAAATTTTCCCAAGAAGAATCAAATTGAGAAAATCAAAGTTTTTTTTTATGGATCAGGGGGTGTGATAGAGATGCATAACTATTTAACAA
GTGTGTATGAAGAAGGTGATGCTCGTTCTGCTCTCATTACAATGGTTCAAGCTCTTAATCATGCCAAAAATGGAGTCGACATTGTCTCTGGCACTAGGGTACGTTACTTTCTTCTTTTTC
ACCATAACGAAGTCGTGATTCTTTTGATAACCCAAAACGGTCCCCCAAAATCTCAATTATGGAAAAATGAACCCACACACAAAGATATGATTCTTAAAAAATCTTCATTTTTCAGGTGTC
AGGACACACTTTGCAAGACCTAATTGGAAGAAGGTTCTCACTAAGCTAAGTTCCAAGCATTGCAATGCAAGGATAGGTAACAATCACTAACCTCCATACATTTCCAATCTTCACAAAAAG
TAAAATATTCTTTTAAGATTCAGTCAATTTAGTCCCCACAATTCATTTTCAGTATCCGTGGGCAATACGTTTCATTTTCATGCTTTATATATAGAAGCTTTCATTTTCTATCACAATCAA
GATTCGGGTTTCAATCAAAATGATTCTTAAATCTTTGATCTTTTGCAGGAGAGTGTTTTATTGCGGAGTACCGGTTTTAGGCAAAGAGCTTAGCAAACTCTGCAACACATTCAATCAAAA
AGGTTCAACCAAGTTTGAATTTCACAAGGAGCACTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA