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Entry information : AlyRboh06 (AlyRbohF)
Entry ID 7584
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyRboh06 (AlyRbohF)
Name (synonym) AlyRboh06 (AlyRbohF)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyRboh06
start..stop		 S start..stop
AtRboh06 1928 0 1..941 1..944
TsRboh06 1803 0 1..941 1..943
NoffRboh06-1B 1800 0 1..941 1..941
NoffRboh06-1A 1794 0 1..941 1..940
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7584' 'complement(join(478784..478893,479106..479184,479322..479450,479544..479723,479810..479969,480044..480211,480285..480400,480500..480595,480674..481060,481856..482278,482952..483065,483548..483596,484155..484314,484383..485037))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 484383..485037 653 N° 2 484155..484314 158 N° 3 483548..483596 47 N° 4 482952..483065 112
N° 5 481856..482278 421 N° 6 480674..481060 385 N° 7 480500..480595 94 N° 8 480285..480400 114
N° 9 480044..480211 166 N° 10 479810..479969 158 N° 11 479544..479723 178 N° 12 479322..479450 127
N° 13 479106..479184 77 N° 14 478784..478893 108  
complement(join(478784..478893,479106..479184,479322..479450,479544..479723,4798 10..479969,480044..480211,480285..480400,480500..480595,480674..481060,481856..4 82278,482952..483065,483548..483596,484155..484314,484383..485037))


exon

Literature and cross-references AlyRboh06 (AlyRbohF)
DNA ref. Phytozome 12:   scaffold_2 (485037..478784)
Protein sequence: AlyRboh06 (AlyRbohF)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   941
PWM (Da):   %s   107943.44 Transmb domain:   %s   o385-404i463-482o523-545i566-588o592-609i745-762o
PI (pH):   %s   9.55
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKPFSKNDRRRWSFDSVSAGKTAVGSASTSPGTEYSINGDQEFVEVTIDLQDDDTIVLRSVEPATTAIGDISDDTTGIMTPVSISRSPTMKRTSSNRFRQFSQELKAEAVAKAKQLSQEL
KRFSWSRSFSGNLTTTSTAANQSGGGGGLVNSALEARALRKQRAQLDRTRSSAQRALRGLRFISNKQTNVDGWNDVQSNFEKFEKNGYIYRSDFAQCIGMKDSKEFALELFDALSRRRRL
KVEKINHDELYEYWSQINDESFDSRLQIFFDIVDKNEDGRITEEEVKIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGL
RKKSRIHRMSSDFVYFMQENWKRIWVLSLWIMIMIGLFLWKFFQYKQKDAFHVMGYCLLTAKGAAETLKFNMALILFPVCRNTITWLRSTRLSYFVPFDDNINFHKTIAGAIVVAVILHI
GDHIACDFPRIVRATEYDYNRYLFHYFQTKQPTYFDLVKGPEGITGILMVILMIISFTLATRWFRRNLVKLPKPFDRLTGFNAFWYSHHLFVIVYILLILHGTFLYFAKPWYVRTTWMYL
AVPILLYGGERTLRYFRSGSYSVRLLKVAIYPGNVLTLQMSKPTQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPEDDYVSIHIRQLGDWTQELKRVFSEVCEPPVAGKSGLLRADETTK
KSLPKLLIDGPYGAPAQDYRKYDVLLLVGLGIGATPFISILKDLLNNIVKMEEHDSISDFSRSSEHSTGSNGDPPRRKRILKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMH
NYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLTKLSSKHCNARIGVFYCGVPVLGKELSKLCNTFNQKGSTKFEFHKEHF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, 14 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAACCGTTCTCAAAGAACGATCGGCGACGGTGGTCATTTGATTCAGTTTCCGCCGGAAAAACCGCCGTCGGAAGTGCATCTACTTCACCGGGAACTGAATACTCCATTAACGGTGAT
CAAGAGTTCGTTGAAGTCACAATCGATCTTCAAGACGATGACACAATCGTTCTTCGTAGCGTCGAGCCAGCAACTACCGCCATTGGAGATATCTCCGACGACACAACCGGAATAATGACT
CCGGTTTCGATTTCTAGATCTCCGACGATGAAACGGACTTCATCGAATCGGTTCCGTCAATTCTCTCAAGAGCTTAAGGCGGAAGCTGTGGCCAAGGCGAAACAGTTATCCCAGGAGTTG
AAACGATTCTCGTGGTCTCGTTCTTTTTCAGGCAATTTAACCACCACCAGTACCGCCGCTAATCAAAGCGGCGGCGGTGGTGGTTTGGTAAACTCTGCTTTAGAAGCTCGAGCGTTGCGA
AAACAACGAGCTCAGTTAGATCGGACTCGGTCTAGTGCTCAAAGAGCTCTTCGTGGTTTGAGATTCATCAGCAACAAGCAAACGAACGTTGATGGTTGGAACGATGTTCAATCAAATTTC
GAAAAATTCGAAAAAAATGGTTACATCTATCGCTCCGATTTCGCTCAATGCATAGGTAAACTCCATAATCTCTAGATTTTGAATTTACTCAAATCTTGATTTGTTTTTTTTTTTTGTTCA
TAGGAGAATGAAAGATTCTAAAGAATTTGCATTGGAACTGTTCGATGCATTGAGTAGAAGAAGAAGATTAAAAGTTGAGAAAATCAATCACGATGAGCTTTATGAGTATTGGTCACAAAT
CAACGACGAAAGTTTTGATTCTCGTCTCCAGATCTTCTTCGACATGTACGTAACAGAAAAGTTACTTACACTTAATAATTAGTTTAATTTTAATTACTGATCTCCTAATCATCTTTTGTT
TCTAATAATAATGATTAGTACTCCCTCCGTTTCATAATATAAGTCGTTTTAGGTTAAAGCACGCGGATTAAGAAGTTCTACTTTTTAAAAATTCAACCAATCATAAAAGAGACTGCATAA
TATAAATAATCATAAAATATTAAAATAATATATAATTTGCATTAAAACTCGAAAACGACTTATATTATGAAACAAATTTTTTTATCTAAAACGCCTTATATTATAAAACGGAGGGAGTAT
CTTATAAAGGTTCCTTATAATCATTTTACTATAAGAAAGAACGATCCCATATTTTCAGTGTTCTTAAATAATTAAACAGTGTGGTAATTTAATTTGCATGTGTGGAGAAATTATTGTTCC
TTACTATGCGTATGTTTTAATTTTTATACTGTATTTTTTTTAATATAAACCTTTTGACTTTAATTGAAGATAATTAATACATAATTAAGAGCTAATCTCCTTTTATTTGTTGGGAATTTA
CAGAGAGTGGACAAGAATGAAGATGGGAGAATTACAGAAGAGGAAGTAAAGGAGGTAAATAAATGATGATAGCTAATCAACACAATTAGCGTTATCAATTTTCATTATTTAATTACATGT
CATAATTTTATCGTTAAATTTTAAAGTAAAATATAAACTTGGGACTGGTAGTCAAAATATAATTTTATATTTATAATCAAAGTTAGGCGGGGATTTGGTGACCTTAAATCTTATGAAATG
CTGATATACTAACCACTCCATTTATTTAAAAAAAAAAAATCAAAAGAACCAAAATACGAATTTTCTTGTCTTGATTTTAACCCATGTTCGTTAGATTCCTATCTGTAACTAATTAAGTTG
GCATTTATGTTGAAATATGTTACTATTGTTTAATTAGTTTTGACTAATAATCAACTTGTTTTAATATAATTTAATCTTTGACGGTGACACAAAATACAATAGAGATGGTTTACTTAACAT
TTTGAAGAAAAAATCCTTATTATCGTTTTTTTTTTTTTTTTCTTTGAATATTTTAGATATAATAATGTTGAGTGCATCTGCAAATAAGCTATCAAGATTAAAGGAACAAGCAGAGGAATA
TGCAGCTTTGATTATGGAAGAGTTAGATCCTGAAAGACTTGGCTACATAGAGGTTGGTTTTTGATACACTGTACAATCTTTAATATGTTACAAAAAATAAATTAAATTTAAATACATTTC
CACAATCACATGCTTTGTTTCCGTGCTTGCATGATGTGAATATTATATTATTACAGATTTTTTTTTTTGTTCAACATATTATTGCAGAATTTTTTCAATACTTTCGTTACACAAACGGAA
TAAAGTATGTTAAACCGCCGCCCATAAATGGGAATTCAATTTTTTTATATATAATGTATGACCTCTTTTATCAAAAAAAAAAAAAAAATGTATGACTTCACATGTTATGAGGAAAAAAAG
GCCAATTTTACAATAGCATTAAATTATTTCATGTTTGCTTTTTTTCTACTCTTATCTCATCTTGCTGACACCTAGTATAGTTGTCCATTATAAAGTATAGATTCTTCTATTCAGTAGTTC
AAATATAGTATATTTTCTTTTTTTCCAATTCATTTACTTGATGGTAGGTGAAGTAGTTACAATAAACTATTTCAGCTGCTAGCGAAAATAGAAGATAGAGTTTGAAAAAAAAAAACATGT
GACTGCTACATCTTGAATGATATATAATATATTTATCTAACTCATGAGCATGTTAAGATTATGATTCATTAAGGCAAATATTTCACACTTTAATGCTATTTTTTTTGGTTTTTTTTTTTG
TGTAGCTCTATGGCAACTAGAGACTTTGCTTCTACAAAAAGACACATACCTCAATTACAGTCAAGCATTGAGCTATACAAGCCAAGCATTGAGCCAAAACCTTCAAGGGTTACGAAAAAA
GAGTCGAATACATCGAATGAGTTCGGATTTCGTATATTTCATGCAAGAGAATTGGAAAAGGATATGGGTTTTATCCTTATGGATCATGATCATGATCGGATTATTCTTATGGAAATTCTT
CCAATACAAGCAAAAAGATGCATTTCATGTGATGGGTTATTGTTTACTCACAGCAAAAGGAGCAGCTGAGACACTTAAATTCAACATGGCTCTAATACTTTTCCCGGTTTGCAGAAACAC
CATTACCTGGCTTAGATCCACAAGACTCTCTTACTTCGTTCCTTTTGATGATAATATCAATTTCCACAAGGTTAGTGAACTATAAACCCTTTTTTGTTGTTTTTTTACTTTGATTTCTAC
TTTTTAGCATTTTTTGGGGGTCCCATAAGAACTTTCTTTTGGTGCTTCTATAGAAGTCAAAACCAATACTAATTAGAGAGATACAAAATCCTCATCGAACGCAATGTGCTGTCGAAAAAG
CTGAGATTGTTGTGGGGCTCATTTTCTTTGTGCACGCACTGGAACATTGACATGACAGCTAAACAACGCTTTCTCCTCTTTTTTTTTCTTCTTCTCATTTCTTACATTTTTTTGCAAAAA
AGAAAAGTGAATAAGAAGAGTAAGCCATGTGAATTTTTGGTTCGGTTATACCGAATTCAGTTTGAAATTCTTTCATCTCGATTTTGCAATAAAAAGACAACCTCCTATGCAGTTCTTGAA
AGTTTTATATCTATTTTGGACCAAAATTTTGTTCAGTTTGAAAAGAATCAGTTTGGTTCTGTTTTGCAGAAAAGACAACTTCAGGTTCAATTTTATAAAATTAACATTATCTGTTTATTT
ACATTCTATGTAGTACATGAAATTAAATTTGTGTGTAATATTATATTTACAACAGTTTATTGCAGTTTATTTAATTTGGTTTTGTTGCATTAGCTTGGTTTCAGATGGGGTTTTTGGATA
TTTTTCGGTTTGGTATTGGTTAAGAAAAAACTTATTTATTTGATATTTTCAACGTTCATAAGCTAAGAAGCCAATGCTCAATTACTACTAATAAAACTATTTTGATGGAAATTTTTAACT
CACTACTCTTTTTTGTTCTGTGCAGACACAATTGCCGGAGCCATTGTAGTAGCTGTGATCCTTCATATTGGAGACCATATTGCTTGTGATTTCCCTAGAATTGTTAGAGCCACTGAATAC
GATTACAATCGGTATCTGTTTCATTACTTTCAAACAAAACAGCCAACATACTTCGACCTCGTTAAGGGACCTGAAGGAATCACAGGGATTTTAATGGTCATTTTGATGATTATTTCATTC
ACATTAGCAACAAGATGGTTTAGGCGTAACCTCGTCAAGCTTCCTAAGCCATTTGATCGACTTACCGGTTTTAACGCCTTTTGGTATTCGCATCATTTGTTCGTCATTGTTTATATCTTG
CTTATCCTTCACGGTACCTTCCTCTATTTCGCCAAGCCTTGGTATGTTCGCACGGTAAGTCTCTATGATCCTAATTCTAAGCTATATACCTAAGTGTTCTTGGTTTTGATTTTGAGATGT
TGTGTTTTGCAGACACATGGATGTATCTTGCGGTACCAATTTTACTCTATGGGGGAGAAAGAACACTTAGGTATTTCCGTTCTGGTTCTTATTCGGTTCGACTTCTTAAGGTAAGTGAAA
AACAAAAACTAAAACAGAGGACTCTGTTTTCTTTATTTTTACTCATTGCCTTGTAGAAAAAGCTAACTTCTTTTGATTTTTCCTTCTAGGTGTTGCTATATATCCCGGTAACGTTCTAAC
GCTGCAAATGTCGAAACCAACTCAATTTCGATACAAAAGCGGACAATACATGTTCGTCCAATGCCCTGCAGTTTCGCCATTCGAATGGTAAAAACTATTCATATCAGTTTTTGATACTAA
TCAAATAATCTGTCTTATACTAATTTGTATTTCGGTCTAGGCGCATCCATTCTCAATTACTTCAGCACCAGAAGATGATTATGTCAGCATTCACATTAGACAACTCGGAGATTGGACTCA
AGAACTCAAAAGAGTATTCTCTGAAGTTTGTGAGCCACCAGTTGCTGGTAAAAGCGGACTTCTCAGAGCCGACGAAACAACAAAGAAAAGGTATAACACGAAAACAAAACCATACACTTA
TAAGTTAACCAAATGCTGATATGTTTAGTTAAATGTTGTTTCAGTTTTTGCCAAAGCTATTGATAGATGGACCATACGGTGCACCGGCGCAAGACTATAGGAAATATGATGTTCTCTTGT
TAGTTGGTCTTGGCATTGGTGCAACTCCATTTATCAGTATCTTGAAAGATTTGCTTAACAACATTGTTAAAATGGAAGAGCATGCGGTAATAAACTAAGTCTTATCTTCTTCTCTTTTGT
GCAAACAATTATAATACAGCTGGAAATCTGATAAATGATTTTACATCTTCAGGAGATTCGATCTCGGATTTCAGTAGATCATCAGAACACAGTACAGGAAGCAACGGTGACCCGCCAAGA
CGGAAAAGAATACTAAAAACCACAAATGCTTACTTCTACTGGGTCACAAGAGAACAAGGCTCTTTTGATTGGTTCAAAGGTGTCATGAATGAAGTTGCAGAACTTGATCAACGGGTAAAA
AAGAAACTCAAAACATTTCTTGACACAATCAAAATTTTCCCAAGAAGAATCAAATTGAGAAAATCAAAGTTTTTTTTTATGGATCAGGGGGTGTGATAGAGATGCATAACTATTTAACAA
GTGTGTATGAAGAAGGTGATGCTCGTTCTGCTCTCATTACAATGGTTCAAGCTCTTAATCATGCCAAAAATGGAGTCGACATTGTCTCTGGCACTAGGGTACGTTACTTTCTTCTTTTTC
ACCATAACGAAGTCGTGATTCTTTTGATAACCCAAAACGGTCCCCCAAAATCTCAATTATGGAAAAATGAACCCACACACAAAGATATGATTCTTAAAAAATCTTCATTTTTCAGGTGTC
AGGACACACTTTGCAAGACCTAATTGGAAGAAGGTTCTCACTAAGCTAAGTTCCAAGCATTGCAATGCAAGGATAGGTAACAATCACTAACCTCCATACATTTCCAATCTTCACAAAAAG
TAAAATATTCTTTTAAGATTCAGTCAATTTAGTCCCCACAATTCATTTTCAGTATCCGTGGGCAATACGTTTCATTTTCATGCTTTATATATAGAAGCTTTCATTTTCTATCACAATCAA
GATTCGGGTTTCAATCAAAATGATTCTTAAATCTTTGATCTTTTGCAGGAGAGTGTTTTATTGCGGAGTACCGGTTTTAGGCAAAGAGCTTAGCAAACTCTGCAACACATTCAATCAAAA
AGGTTCAACCAAGTTTGAATTTCACAAGGAGCACTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAACCGTTCTCAAAGAACGATCGGCGACGGTGGTCATTTGATTCAGTTTCCGCCGGAAAAACCGCCGTCGGAAGTGCATCTACTTCACCGGGAACTGAATACTCCATTAACGGTGAT
CAAGAGTTCGTTGAAGTCACAATCGATCTTCAAGACGATGACACAATCGTTCTTCGTAGCGTCGAGCCAGCAACTACCGCCATTGGAGATATCTCCGACGACACAACCGGAATAATGACT
CCGGTTTCGATTTCTAGATCTCCGACGATGAAACGGACTTCATCGAATCGGTTCCGTCAATTCTCTCAAGAGCTTAAGGCGGAAGCTGTGGCCAAGGCGAAACAGTTATCCCAGGAGTTG
AAACGATTCTCGTGGTCTCGTTCTTTTTCAGGCAATTTAACCACCACCAGTACCGCCGCTAATCAAAGCGGCGGCGGTGGTGGTTTGGTAAACTCTGCTTTAGAAGCTCGAGCGTTGCGA
AAACAACGAGCTCAGTTAGATCGGACTCGGTCTAGTGCTCAAAGAGCTCTTCGTGGTTTGAGATTCATCAGCAACAAGCAAACGAACGTTGATGGTTGGAACGATGTTCAATCAAATTTC
GAAAAATTCGAAAAAAATGGTTACATCTATCGCTCCGATTTCGCTCAATGCATAGGAATGAAAGATTCTAAAGAATTTGCATTGGAACTGTTCGATGCATTGAGTAGAAGAAGAAGATTA
AAAGTTGAGAAAATCAATCACGATGAGCTTTATGAGTATTGGTCACAAATCAACGACGAAAGTTTTGATTCTCGTCTCCAGATCTTCTTCGACATAGTGGACAAGAATGAAGATGGGAGA
ATTACAGAAGAGGAAGTAAAGGAGATAATAATGTTGAGTGCATCTGCAAATAAGCTATCAAGATTAAAGGAACAAGCAGAGGAATATGCAGCTTTGATTATGGAAGAGTTAGATCCTGAA
AGACTTGGCTACATAGAGCTATGGCAACTAGAGACTTTGCTTCTACAAAAAGACACATACCTCAATTACAGTCAAGCATTGAGCTATACAAGCCAAGCATTGAGCCAAAACCTTCAAGGG
TTACGAAAAAAGAGTCGAATACATCGAATGAGTTCGGATTTCGTATATTTCATGCAAGAGAATTGGAAAAGGATATGGGTTTTATCCTTATGGATCATGATCATGATCGGATTATTCTTA
TGGAAATTCTTCCAATACAAGCAAAAAGATGCATTTCATGTGATGGGTTATTGTTTACTCACAGCAAAAGGAGCAGCTGAGACACTTAAATTCAACATGGCTCTAATACTTTTCCCGGTT
TGCAGAAACACCATTACCTGGCTTAGATCCACAAGACTCTCTTACTTCGTTCCTTTTGATGATAATATCAATTTCCACAAGACAATTGCCGGAGCCATTGTAGTAGCTGTGATCCTTCAT
ATTGGAGACCATATTGCTTGTGATTTCCCTAGAATTGTTAGAGCCACTGAATACGATTACAATCGGTATCTGTTTCATTACTTTCAAACAAAACAGCCAACATACTTCGACCTCGTTAAG
GGACCTGAAGGAATCACAGGGATTTTAATGGTCATTTTGATGATTATTTCATTCACATTAGCAACAAGATGGTTTAGGCGTAACCTCGTCAAGCTTCCTAAGCCATTTGATCGACTTACC
GGTTTTAACGCCTTTTGGTATTCGCATCATTTGTTCGTCATTGTTTATATCTTGCTTATCCTTCACGGTACCTTCCTCTATTTCGCCAAGCCTTGGTATGTTCGCACGACATGGATGTAT
CTTGCGGTACCAATTTTACTCTATGGGGGAGAAAGAACACTTAGGTATTTCCGTTCTGGTTCTTATTCGGTTCGACTTCTTAAGGTTGCTATATATCCCGGTAACGTTCTAACGCTGCAA
ATGTCGAAACCAACTCAATTTCGATACAAAAGCGGACAATACATGTTCGTCCAATGCCCTGCAGTTTCGCCATTCGAATGGCATCCATTCTCAATTACTTCAGCACCAGAAGATGATTAT
GTCAGCATTCACATTAGACAACTCGGAGATTGGACTCAAGAACTCAAAAGAGTATTCTCTGAAGTTTGTGAGCCACCAGTTGCTGGTAAAAGCGGACTTCTCAGAGCCGACGAAACAACA
AAGAAAAGTTTGCCAAAGCTATTGATAGATGGACCATACGGTGCACCGGCGCAAGACTATAGGAAATATGATGTTCTCTTGTTAGTTGGTCTTGGCATTGGTGCAACTCCATTTATCAGT
ATCTTGAAAGATTTGCTTAACAACATTGTTAAAATGGAAGAGCATGCGGATTCGATCTCGGATTTCAGTAGATCATCAGAACACAGTACAGGAAGCAACGGTGACCCGCCAAGACGGAAA
AGAATACTAAAAACCACAAATGCTTACTTCTACTGGGTCACAAGAGAACAAGGCTCTTTTGATTGGTTCAAAGGTGTCATGAATGAAGTTGCAGAACTTGATCAACGGGGTGTGATAGAG
ATGCATAACTATTTAACAAGTGTGTATGAAGAAGGTGATGCTCGTTCTGCTCTCATTACAATGGTTCAAGCTCTTAATCATGCCAAAAATGGAGTCGACATTGTCTCTGGCACTAGGGTC
AGGACACACTTTGCAAGACCTAATTGGAAGAAGGTTCTCACTAAGCTAAGTTCCAAGCATTGCAATGCAAGGATAGGAGTGTTTTATTGCGGAGTACCGGTTTTAGGCAAAGAGCTTAGC
AAACTCTGCAACACATTCAATCAAAAAGGTTCAACCAAGTTTGAATTTCACAAGGAGCACTTCTAA

Retrieve as FASTA