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Entry information : TnPxd01
Entry ID 7618
Creation 2010-09-28 (Marcel Zamocky)
Last sequence changes 2010-09-28 (Marcel Zamocky)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2010-10-06 (Christophe Dunand)
Peroxidase information: TnPxd01
Name TnPxd01
Class Peroxidasin     [Orthogroup: Pxd001]*
Taxonomy Eukaryota Metazoa Chordata Actinopterygii Tetraodontidae Tetraodon
Organism Tetraodon nigroviridis    [TaxId: 99883 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TnPxd01
start..stop		 S start..stop
TrubPxd01 2259 0 32..1379 135..1470
TrubPxd01 280 5.82e-77 1..152 32..183
GacPxd01 2180 0 32..1373 104..1434
GacPxd01 269 1.21e-73 1..156 1..160
OlaPxd01 2132 0 32..1379 138..1475
OlaPxd01 228 1.3e-60 5..521 39..518
DrPxd01 2055 0 32..1374 134..1464
DrPxd01 265 3.66e-72 1..152 31..182
Literature and cross-references TnPxd01
Literature Jaillon O., Aury J.-M., Brunet F., Petit J.-L., Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S., Roest Crollius H. (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431:946-957
Protein ref. UniProtKB:   Q4SMF3
DNA ref. GenBank:   CAAE01014551.1 (297889..326181)
Protein sequence: TnPxd01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1379
PWM (Da):   %s   154578.22 Transmb domain:   %s   i7-29o
PI (pH):   %s   7.3
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CPSRCLCFRT TVRCMHLNLE TVPAVSPQTT ILDLRFNKIK DLQLGSFRQL KNLNTLLLNN NRIRRIPRGA FEDLENLKYL YLYKNEIQSI DRQAFKGLVS LEQLYLHFNN IESLEPESFS  HLPKLERLFL HNNRISHLVP GTFSHLEAMK RFNALNMRDD SRLNLLEDGT LMIQDTRETD QGIYQCMAKN VAGQVKTSQV TLRYFGAPCK CLCLLNSLLM SIHRLIIEYL CKYVCTNLST  SFSHGPSSAC ASAPPARPSF VIQPQNTEVL VGESVTLECS ATGQPQPRVS WTKGDRSPLP SDARINITPS GGLYIQNVVQ ADGGEYTCFA SNNVDTVHAT AHIIVQAIPH FTVKPQDQSV  LEGQTVDFLC EASGYPQPVI AWTRGGSPLP LDRRHVVLSS GALRITRVEA HDEGEYECQA VSPVGTVRTS AQLNIQQRVT PVFTNTPKDL EVESGEDVHI PCKAEGQPEP VITWNKRVAS  STSVLMAIWR LRDVGTADAG RYECVARNPI GYRVASMVLT VTVLPVSREG DTFVSTSIEQ AIRNVDSAIE STRRRLFDGQ PRTPGELLAL FRYPRDPYTV EQARAGEIFE QTLLLIQNHV  NQGLTVDTNG TAFRYNDLVS PHFLDVIANL SGCTAHRRFN NCSDICFHQK YRSHDGTCNN LQHPMWGASL TAFDRLLKSV YDNGFNLPRG ATEGPHNGYR LPLPRLVSTT MIGTETITPD  DRYTHMLMQW GQFLDHDLDA TVAALSQSRF SDGQLCTQVC TNDPPCFPIQ FPPNDPRQLR TGANCMFFVR SSPVCGSGMT SLLMNSVYPR EQINQLTSYI DASNVYGSSR HESEEIRDLA  SQRGLLRQGI IQRTGKPLLP FATGPPTECM RDENESPIPC FLAGDHRANE QLGLTAMHTV WFREHNRIAT ELLRLNPHWD GDTIYHEARK IVGAQMQHVT YSHWLPKILG EAGMRMMGSY  TGYNPNINAG IFNAFATAAF RFGHTLINPI LYRLDEDFQP IPQGHVSLHR AFFSPFRIVN EGGIDPLLRG LFGVAGKMRV STQLLNTELT ERLFSMAHAV ALDLAAMNIQ RGRDHGIPPY  NDYRTFCNLT SAQTFDDLRN EIKNPTVREK IQRLYGTPLN VDLFPALMAE DLVPGSRLGP TLMCLLATQF KRLRDGDRFW YENPGVFTPA QLTQLKQASL ARVLCDNGDN ITRVQKDGFR  VAEHPHGYSS CDDIPHIDLR MWQDCCEDCR TKGQFNALSY HFRGRRSAEH SYSEETFAPS IPQNRESLGN ITVTSGKSTK PSINDFQDFV SEMQQTITSL RKQIKQLEKR VSKTECTDST 
GQERTDGERW EKDPCTLCEC KDAQVTCLVQ SCPPVGCKQP VKLKGICCPV CLQHTVVDK 

Retrieve as FASTA  
Remarks Partial from genomic (chromo undetermined, 19 introns), no EST found.