Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
461 |
| PWM (Da): |
49473.5 |
Transmb domain: |
o443-460i |
| PI (pH): |
7.12 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MTAIAAQGLT LRGEALGALS SSVGDGRECC PKTTSVVYGL GNADILKARA VTAVTPVTAI TAVAALSSRK LSSEFLPLLS VPQQQQQLKA TRRRTFKKVR ASQGDAATTT TTNATSTELS
LVEQLRGARE GIKEIIQSKH CNPILVRLGW HDSGTYNKEV EGWPKAAGAT GSIRFKPEID HGANAGLINA LELVKPIKEK YPAVSYADLF QLASATAIEV AGGPKIPMRY GRVDASSPED
CALDGNLPDA APPSPADHLR KVFYRMGLTD KDIVALSGAH TIGRARLGRS GFGKESTKYT EKGPGNPGGQ SWTPEWLVFD NSYFKEVKTK RDEDLLVLPT DAALFEDEGF KVYAEKYAAD
QEAFFKDYAE SHAKLSELGS KFDPPEGITI DEATPAADAG VEKFVAAKYS TTAAELSPEM REKMRREYVS WGGTPNEPAA NNFLYAIIIV GVLALVTRLF T
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Retrieve as FASTA
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| Remarks |
Complete sequence from ESTs (nhya_Contig3673 (in cDNA window) is very close to nhya_lrc2749_c(in DNA window) with a few mismatchs and close to nhya_lrc1663_c and nhya_lrc55453_c (not displayed) with short contaminations). |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACTGCCA TCGCCGCGCA AGGGCTCACG CTACGCGGGG GGGCACTTGG GGCTCTTTCT TCTAGCGTTG GCGATGGCCG CGAGTGCTGT CCAAAGACGA CCAGCGTGGT GTATGGCCTG
GGAAATGCCG ACATTCTGAA AGCGAGAGCT GTCACAGCTG TCACACCTGT CACAGCTGTC ACAGCTGTTG CAGCTTTGCC AAGTCGAAAG CTTTCGTCGG AGTTCTTGCC TCTTCTCAGT
GCTCCGCAGC AGCAGCAGCA GCAGCTCAAA GCAACCGGGA GGAGAACGTT TAAGAAAGCG AGAGCGATTC AAGGAGACGC TGCCACCACC ACCACCACGA ATGCAGCGTC CACAGAGTTA
TCTCTTGTGG AGCAGCTAAG AGGAGCTAGA GAGGGAATCA AAGAGATTAT TCAGAGCAAG CACTGCAACC CAATTCTAGT GCGACTTGGG TGGCATGACT CTGGGACTTA CAATAAGGAG
GTTGAAGGCT GGCCCAAAGC TGCGGGTGCC ACAGGAAGCA TAAGGTTCAA GCCGGAGATT GACCATGGTG CAAATGCAGG GCTCATAAAT GCACTCAAGC TCGTCGAGCC AATCAAGGAA
AAGTATCCAG CTGTCAGCTA TGCTGACCTG TTTCAGCTTG CAAGTGCAAC TGCAATTGAG GTTGCTGGTG GGCCCAAGAT TCCCATGAGG TATGGCCGTG TCGATGCCAG CTCTCCTGAG
GACTGCGCTC CCGATGGAAA TCTCCCAGAT GCTGCACCCC CATCTCCAGC AGACCACCTT CGCAAAGTCT TCTATCGCAT GGGTTTGACA GATAAGGATA TTGTTGCACT TTCCGGTGCC
CACACAATAG GACGTGCTCG CCCGGACCGG AGTGGCTTCG GAAAGGAGTC AACGAAATAC ACAGAAAAAG GGCCTGGCAA TCCTGGTGGG CAATCTTGGA CCCCAGAGTG GCTGGTATTT
GACAACAGCT ATTTCAAGGA GGTTAAGGCA AAGCGGGATG AGGACCTACT CGTCTTGCCG ACAGATGCTG CTTTGTTTGA AGATGAAGGC TTCAAGGTAT ATGCGGAAAA GTATGCCGCA
GATCAAGAAG CGTTTTTCAA GGATTACGCA GAATCACATG CGAAGCTGAG TGAGCTTGGT TCCAAGTTTG ACCCGGCAGA GGGCATCACG ATCGATGAGG TCACGCCTGC AGCAGATGCG
GGCGTTGAGA AATTTGTTGC GGCAAAGTAT TCCACCACTG CAGCAGAAGA GACACCAAAG AAGGTTTAAA TTATTTTTTG AGAAAGTTTT TTATTTACCT TAATCAGCTG CAAGATTTTG
AGGATGGATT ATCCCCTGAG ATGAGAGAGA AGATGCGGAG AGAGTACGTC TCATGGGGTG GAACGCCAAA CGAGCCAGCT GCAAATAATT TTCTTTATGC TATCATCATC GTCGGGGTCC
TTGCTCTTGT CACCAGGCTC TTCACTTAA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACTGCCA TCGCCGCGCA AGGGCTCACG CTACGCGGAG AGGCACTTGG GGCTCTTTCT TCTAGCGTTG GCGATGGCCG TGAGTGCTGT CCAAAGACGA CCAGCGTGGT ATATGGCCTG
GGAAATGCTG ACATTCTGAA GGCGAGAGCT GTCACAGCTG TCACACCTGT CACAGCTATC ACAGCTGTTG CAGCTTTGTC AAGTCGGAAG CTTTCGTCGG AGTTCTTGCC TCTTCTCAGT
GTTCCGCAGC AGCAGCAGCA GCTCAAAGCA ACAAGGAGGA GAACGTTTAA AAAAGTGAGA GCGAGTCAAG GAGACGCTGC CACGACCACC ACCACGAATG CAACCTCCAC AGAGTTATCT
CTTGTGGAGC AGCTAAGAGG AGCTAGAGAG GGAATCAAAG AGATTATTCA GAGCAAGCAC TGCAACCCAA TTCTAGTGCG CCTTGGGTGG CATGATTCTG GGACTTACAA TAAGGAGGTT
GAAGGTTGGC CCAAAGCTGC GGGTGCCACA GGAAGCATAA GGTTCAAGCC GGAGATTGAC CATGGTGCAA ATGCAGGGCT CATCAATGCA CTCGAGCTCG TCAAGCCAAT CAAAGAAAAA
TATCCAGCTG TCAGCTATGC TGACCTGTTT CAGCTTGCAA GTGCAACTGC AATTGAGGTT GCTGGTGGGC CCAAGATTCC CATGAGGTAT GGCCGTGTCG ATGCCAGCTC TCCTGAGGAC
TGCGCTCTCG ATGGAAATCT CCCAGATGCT GCACCCCCAT CTCCAGCAGA CCACCTTCGC AAAGTCTTCT ATCGCATGGG TTTGACAGAT AAGGATATTG TTGCACTTTC CGGTGCCCAC
ACAATAGGAC GTGCTCGCCT GGGCCGGAGT GGATTCGGAA AGGAGTCAAC GAAATACACA GAAAAAGGCC CTGGCAATCC TGGTGGGCAA TCTTGGACCC CAGAGTGGCT GGTATTTGAC
AACAGCTATT TCAAGGAGGT TAAGACAAAG CGGGATGAGG ACCTACTCGT CTTGCCGACA GATGCCGCTT TGTTTGAAGA TGAAGGCTTC AAGGTGTATG CGGAAAAGTA TGCCGCAGAT
CAAGAAGCGT TTTTCAAGGA TTACGCAGAA TCACATGCGA AGCTGAGTGA GCTCGGTTCC AAGTTTGACC CGCCAGAGGG CATCACAATC GATGAGGCCA CGCCTGCAGC AGATGCGGGC
GTTGAGAAAT TTGTTGCGGC AAAGTATTCG ACCACTGCAG CAGAATTATC CCCTGAGATG AGAGAGAAGA TGAGGAGAGA GTACGTCTCA TGGGGTGGAA CGCCAAACGA GCCAGCTGCA
AATAATTTTC TTTATGCTAT CATCATTGTC GGGGTCCTTG CTCTTGTCAC CAGGCTCTTC ACTTAA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
GTCCTTGTTC TTCTGTCTCA ACGTCACCAT GACTGCCATC GCCGCGCAAG GGCTCACGCT ACGCGGAGAG GCACTTGGGG CTCTTTCTTC TAGCGTTGGC GATGGCCGTG AGTGCTGTCC
AAAGACGACC AGCGTGGTAT ATGGCCTGGG AAATGCTGAC ATTCTGAAGG CGAGAGCTGT CACAGCTGTC ACACCTGTCA CAGCTATCAC AGCTGTTGCA GCTTTGTCAA GTCGGAAGCT
TTCGTCGGAG TTCTTGCCTC TTCTCAGTGT TCCGCAGCAG CAGCAGCAGC TCAAAGCAAC AAGGAGGAGA ACGTTTAAAA AAGTGAGAGC GAGTCAAGGA GACGCTGCCA CGACCACCAC
CACGAATGCA ACCTCCACAG AGTTATCTCT TGTGGAGCAG CTAAGAGGAG CTAGAGAGGG AATCAAAGAG ATTATTCAGA GCAAGCACTG CAACCCAATT CTAGTGCGCC TTGGGTGGCA
TGATTCTGGG ACTTACAATA AGGAGGTTGA AGGTTGGCCC AAAGCTGCGG GTGCCACAGG AAGCATAAGG TTCAAGCCGG AGATTGACCA TGGTGCAAAT GCAGGGCTCA TCAATGCACT
CGAGCTCGTC AAGCCAATCA AAGAAAAATA TCCAGCTGTC AGCTATGCTG ACCTGTTTCA GCTTGCAAGT GCAACTGCAA TTGAGGTTGC TGGTGGGCCC AAGATTCCCA TGAGGTATGG
CCGTGTCGAT GCCAGCTCTC CTGAGGACTG CGCTCTCGAT GGAAATCTCC CAGATGCTGC ACCCCCATCT CCAGCAGACC ACCTTCGCAA AGTCTTCTAT CGCATGGGTT TGACAGATAA
GGATATTGTT GCACTTTCCG GTGCCCACAC AATAGGACGT GCTCGCCTGG GCCGGAGTGG ATTCGGAAAG GAGTCAACGA AATACACAGA AAAAGGCCCT GGCAATCCTG GTGGGCAATC
TTGGACCCCA GAGTGGCTGG TATTTGACAA CAGCTATTTC AAGGAGGTTA AGACAAAGCG GGATGAGGAC CTACTCGTCT TGCCGACAGA TGCCGCTTTG TTTGAAGATG AAGGCTTCAA
GGTGTATGCG GAAAAGTATG CCGCAGATCA AGAAGCGTTT TTCAAGGATT ACGCAGAATC ACATGCGAAG CTGAGTGAGC TCGGTTCCAA GTTTGACCCG CCAGAGGGCA TCACAATCGA
TGAGGCCACG CCTGCAGCAG ATGCGGGCGT TGAGAAATTT GTTGCGGCAA AGTATTCGAC CACTGCAGCA GAATTATCCC CTGAGATGAG AGAGAAGATG AGGAGAGAGT ACGTCTCATG
GGGTGGAACG CCAAACGAGC CAGCTGCAAA TAATTTTCTT TATGCTATCA TCATTGTCGG GGTCCTTGCT CTTGTCACCA GGCTCTTCAC TTAATTGTTT AGATTTTGTA AATGGCAAAA
CCTCTCAAAC TGCAAATCTC CACAAAAGAA CGAGACAACT TTCTAACTGG TGAAGTGTCA TCATACTCAT CACTGTGAAG CGGAGTACGG TTTGATnTTT
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Retrieve as FASTA
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