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Entry information : PmargPrx01
Entry ID 7751
Creation 2010-11-04 (Qiang Li)
Last sequence changes 2010-12-23 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-14 (Qiang Li)
Peroxidase information: PmargPrx01
Name PmargPrx01
Class Class III peroxidase     [Orthogroup: Prx073]*
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargPrx01
start..stop		 S start..stop
PmargPrx02 229 2.22e-76 1..146 174..324
PmargPrx04 214 1.3e-72 1..146 27..178
PmargPrx05 213 7.72e-70 1..146 200..350
PmargPrx06 153 3.47e-47 1..146 144..293
Literature and cross-references PmargPrx01
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO603926.1
Protein sequence: PmargPrx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   146
PWM (Da):   %s   15986.14  
PI (pH):   %s   9.66
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
LIANFAQVGL DLVDVVALSG AHTIGHAHCK SVGDRLPPNK DPTMARQLHS KLTKVCNHGT DRLVHPMAEF DNDLRTPVTF DNQYYKNFTS DMALLxxHRS LPFVRLYAQN QNAFFKQFRL 
SMLKMGDxLP LTGSQGEIRR TCSRVN 

Retrieve as FASTA  
Remarks Partial sequence from EST (HO603926.1). 5' end and 3' end are missing.
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTCATCGCCA ACTTTGCGCA AGTGGGCCTC GACCTCGTCG ACGTCGTCGC TCTCTCTGGT GCGCACACGA TCGGGCACGC GCACTGCAAG AGCGTGGGGG ACCGTCTGCC GCCGAACAAG  GACCCCACCA TGGCGCGCCA GCTGCACTCG AAGCTCACCA AGGTGTGCAA CCACGGCACC GACCGCCTCG TCCACCCCAT GGCTGAGTTC GACAACGACC TGCGCACGCC CGTCACGTTC  GACAACCAGT ACTACAAGAA CTTCACGTCG GACATGGCGC TGCTCCAYGA YCACCGCTCG CTGCCRTTCG TGCGCCTGTA CGCACAGAAC CAGAACGCCT TCTTCAAGCA GTTCAGGCTG 
TCGATGCTGA AGATGGGCGA CATYCTCCCG CTCACAGGCA GCCAGGGTGA GATCCGCCGC ACCTGCAGCC GAGTSAAC 

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cDNA►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCCTCATCGC CAACTTTGCG CAAGTGGGCC TCGACCTCGT CGACGTCGTC GCTCTCTCTG GTGCGCACAC GATCGGGCAC GCGCACTGCA AGAGCGTGGG GGACCGTCTG CCGCCGAACA  AGGACCCCAC CATGGCGCGC CAGCTGCACT CGAAGCTCAC CAAGGTGTGC AACCACGGCA CCGACCGCCT CGTCCACCCC ATGGCTGAGT TCGACAACGA CCTGCGCACG CCCGTCACGT  TCGACAACCA GTACTACAAG AACTTCACGT CGGACATGGC GCTGCTCCAY GAYCACCGCT CGCTGCCRTT CGTGCGCCTG TACGCACAGA ACCAGAACGC CTTCTTCAAG CAGTTCAGGC  TGTCGATGCT GAAGATGGGC GACATYCTCC CGCTCACAGG CAGCCAGGGT GAGATCCGCC GCACCTGCAG CCGAGTSAAC AAGTGAGGCA ACACGGGAGC ATTTGCGAAG ACACACAAGT  TTTGCTCTTC TTCTTTTGCT GCCACCCCAC ATAAGCAAGG CCCCATGCGA TTCCCTCGTC GCAGCTAGTC AGAGGTGCCA CGTGAGCTTT GGACCGGACG TGCTGATGGC TGCACGAGGG 
AGCATGCGCT CAGGTAGCCT AGCAGCAATG TGAGCCGATT CTGAGG 

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