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Entry information : PmargAPx05
Entry ID 7765
Creation 2010-11-08 (Qiang Li)
Last sequence changes 2010-12-13 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-13 (Christophe Dunand)
Peroxidase information: PmargAPx05
Name PmargAPx05
Class Ascorbate peroxidase    [Orthogroup: APx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargAPx05
start..stop		 S start..stop
CglobAPx05 503 0 1..249 1..249
PexiAPx01 437 6.91e-158 1..249 1..249
RobtAPx01 409 1.01e-146 3..249 2..248
SpraAPx01 394 8.83e-141 4..247 2..245
Literature and cross-references PmargAPx05
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO592563.1  HO615655.1  HO625506.1
Protein sequence: PmargAPx05
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   249
PWM (Da):   %s   27408.91 Transmb domain:   %s   o20-42i
PI (pH):   %s   5.69
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVKAYPEVTP EYAKAITKAK RELRALIASK NCAPIMVRLA WHNCGTWNAK TKTGGPNGSI RNKEELAHGA NAGLQWAVDV LEPIKAKFPV ISYADLYQLA GYVGIEVTGG PEIEFKAGRK  DEDPSPEEGR LPDATKDSNH LRAVFGNMGL SDKEIVLLSG AHTLGRCHKD RSGFDGPWTE EPLKFSNDYF QNLLKGETPG LIQLPTDKAL VEDPIFKSFV EKYAADEDLF FEEYAEAHKR 
LSELGFADA 

Retrieve as FASTA  
Remarks Complete sequence from 3 ESTs. Strain="SKD-2004, CL-18".


DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAAGACAGCA ACCACCTCCG CGCTGTATTC GGAAACATGG GATTGTCAGA CAAGGAGATT GTGCTCCTTT CTGGTGCGCA CACCCTGGGA CGCTGCCACA AGGATAGGTC AGGATTTGAC  GGCCCCTGGA CAGAGGAGCC GTTGAAGTTC TCCAACGACT ATTTCCAAAA CCTGTTGAAG GGGGAGACTC CTGGACTGAT TCAGCTACCG ACAGATAAGG CTCTTGTTGA GGATCCCATC  TTCAAGTCCT TTGTGGAGAA ATATGCAGCT GATGAGGATC TCTTCTTTGA CGAATATGCA GAGGCACACA AGAGACTGTC TGAGCTTGGG TAAGCCATGA AGTCAGCCGT ATTATCTTTC  GCACATAGCC TTATTCTTGG AGCAACCTCA TTCCTAACCA GTGTTGACTT GGCAGGATCG GGATCGAGAT CGAGATCGAC AGGATCGAGA TCGACCATGA GGGGGGGTGG AGAGGATCGA 
CAGGATCGAG GAGTGGATCG AGGGCGGGGA AGGAGGGGGA GAGGGGTATT TAAGCCTTAC AAAATAGAAG GTTGCGAGG 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTTAAGG CTTACCCCGA GGTGACGCCC GAGTATGCGA AGGCCATCAC CAAGGCCAAG CGGGAGCTTC GAGCGCTCAT TGCATCGAAG AATTGCGCGC CCATCATGGT TCGCCTCGCG  TGGCACAACT GCGGTACTTG GAATGCTAAG ACCAAGACTG GCGGACCAAA CGGCTCCATC CGGAACAAGG AGGAGCTTGC CCACGGCGCC AATGCGGGCC TTCAATGGGC TGTTGATGTA  TTGGAGCCAA TCAAGGCCAA GTTCCCCGTC ATCTCTTACG CCGACCTTTA TCAGCTCGCT GGCTACGTGG GCATCGAGGT GACTGGTGGC CCTGAGATTG AGTTCAAGGC TGGAAGAAAG  GATGAGGATC CGAGTCCTGA GGAAGGTCGC CTTCCCGACG CAACTAAAGA CAGCAACCAC CTCCGCGCTG TGTTCGGAAA CATGGGATTG TCAGACAAGG AGATTGTGCT CCTTTCTGGT  GCGCACACTC TGGGACGCTG CCACAAGGAC AGGTCAGGAT TTGATGGCCC CTGGACAGAG GAGCCGTTGA AGTTCTCCAA CGACTATTTC CAAAACCTGT TGAAGGGGGA GACTCCTGGA  CTGATTCAAC TGCCTACAGA TAAGGCTCTT GTGGAGGATC CCATCTTCAA GTCCTTTGTG GAGAAATACG CAGCTGATGA GGATCTCTTC TTTGAGGAAT ATGCAGAGGC ACACAAGAGA 
CTGTCTGAGC TTGGGTTTGC TGACGCTTAA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGGGACAAGT TTGTCTTCTT CACAGTCCTC GTGCACACCT AGGCCCTTGA CCTCAGATTT CCACATCTCC GCGTCCTCCC CGCAAGCAAG TTTAGCACAA TGGTTAAGGC TTACCCCGAG  GTGACGCCCG AGTATGCGAA GGCCATCACC AAGGCCAAGC GGGAGCTTCG AGCGCTCATT GCATCGAAGA ATTGCGCGCC CATCATGGTT CGCCTCGCGT GGCACAACTG CGGTACTTGG  AATGCTAAGA CCAAGACTGG CGGACCAAAC GGCTCCATCC GGAACAAGGA GGAGCTTGCC CACGGCGCCA ATGCGGGCCT TCAATGGGCT GTTGATGTAT TGGAGCCAAT CAAGGCCAAG  TTCCCCGTCA TCTCTTACGC CGACCTTTAT CAGCTCGCTG GCTACGTGGG CATCGAGGTG ACTGGTGGCC CTGAGATTGA GTTCAAGGCT GGAAGAAAGG ATGAGGATCC GAGTCCTGAG  GAAGGTCGCC TTCCCGACGC AACTAAAGAC AGCAACCACC TCCGCGCTGT GTTCGGAAAC ATGGGATTGT CAGACAAGGA GATTGTGCTC CTTTCTGGTG CGCACACTCT GGGACGCTGC  CACAAGGACA GGTCAGGATT TGATGGCCCC TGGACAGAGG AGCCGTTGAA GTTCTCCAAC GACTATTTCC AAAACCTGTT GAAGGGGGAG ACTCCTGGAC TGATTCAACT GCCTACAGAT  AAGGCTCTTG TGGAGGATCC CATCTTCAAG TCCTTTGTGG AGAAATACGC AGCTGATGAG GATCTCTTCT TTGAGGAATA TGCAGAGGCA CACAAGAGAC TGTCTGAGCT TGGGTTTGCT  GACGCTTAAT GCTTAGGGAT CCATCCAGTC GCAACCTCTC CAAGCGGAAG TGGAAAAGGG TTATGAAGCA AGACATTTTG TCGGTGACAG ATTGAAATAC TGAATATGAC ATTTTATTGC  ATGTCGGCGT ATGTGTGAAA AGCAATCAGA CACAGTACAG GATCCAATCC TGATGCGCAC TCTGACAAGT TTTGCTCACC ACCACTAAAC CAAATGTGTT GCATCTTCAA GGATAAACAT 
ATGTACTTAA CTGGGGTGAA ATCTCAAATC CAAAGACACC TGTGCAAC 

Retrieve as FASTA