Entry information : SpoPxc01
Entry ID 7782
Creation 2010-11-29 (Marcel Zamocky)
Last sequence changes 2016-03-02 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-03-02 (Achraf Jemmat)
Peroxidase information: SpoPxc01
Name SpoPxc01
Class Bacterial peroxicin    [Orthogroup: Pxc001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhodobacteraceae Ruegeria
Organism Silicibacter pomeroyi    [TaxId: 89184 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpoPxc01
start..stop
S start..stop
RsphPxc01_ATCC17029 368 2e-121 28..564 24..558
RsphPxc01_241 366 1e-120 28..564 24..558
CsePxc01 324 3e-104 28..564 61..580
FspPxc01 284 1e-88 22..564 47..592
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 780325..782022 1698  
join(780325..782022)


exon

Literature and cross-references SpoPxc01
Literature Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B., Kiene R.P., Henriksen J.R. et al. (2004) Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913.
Protein ref. GenBank:   AAV94052.1 UniProtKB:   Q5LVF5
DNA ref. GenBank:   CP000031.1 (780325..782022)
Protein sequence: SpoPxc01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   565
PWM (Da):   %s   61390.92  
PI (pH):   %s   5.49
Sequence
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Send to Peroxiscan
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MYCQPDHGGP AGPYGNIYRS TMSACRSFDY FFPDAPVQVA DPARVKALDA LGLAMVKRDP VAGANSALAP VLTYFGQFID HDITAGTDRD GANEMIDAPD LAPRSREAVR TEKQNMRSGR  LDLDSLYGGL PDGVPQNPAD KAFLDKLVSA MRSKTFRGQM RIDVYSEDTP DSAVPFPTTD RAGDLLRLGA LERDKLVTED EILGLSDGMR KMFTRKDGKT LNPTRAIIGD ARNDENLIIA  QFHLVFLRLH NRLVQNRPGH VKASKAFDWA RDRTRWIYQW LVVNEYLRKI CQEDILDDIL AAGPGLYQNF LANSGCTDGK LPLPIEFSAA AFRFGHSMVR DAYDWNTFFG TKTTHDPTLP  EAGSQLLFAF TGGGEMNGFP VDRLPGNWGA DWQRLIFAGA GATPTEFARK IDTHLALELG ALPGGTAGTI MAHLARRNLR RGHMLNLPSA QDCAGELGLV PLGTAELGEG EIAQVLSQGG 
LSEATPLWYY VLREAEVRNS GEALGPLGTN LVAQTLLGLV QSDPGSYWHQ TGTGGARWTP ADLVADGLPD LSSIEAVMRF GGHLR 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Strain="strain ATCC 700808 / DSM 15171 / DSS-3".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTACTGTC AGCCCGACCA CGGAGGCCCC GCCGGCCCTT ACGGAAACAT CTACCGTTCA ACAATGTCCG CGTGCCGGTC CTTCGACTAT TTCTTTCCCG ATGCACCTGT TCAGGTCGCC  GATCCCGCGA GAGTGAAGGC GCTTGATGCG CTGGGGTTGG CCATGGTCAA ACGGGATCCT GTCGCTGGTG CGAATTCGGC CCTTGCGCCG GTCCTGACTT ACTTCGGCCA GTTCATCGAC  CACGACATCA CGGCCGGAAC CGACCGCGAC GGCGCGAACG AGATGATCGA CGCGCCTGAT CTGGCCCCGC GTTCGCGCGA AGCGGTGCGC ACCGAAAAGC AGAATATGCG GTCGGGTCGG  TTGGACCTCG ACAGCCTTTA CGGGGGGCTG CCCGACGGTG TTCCGCAGAA CCCGGCCGAC AAGGCTTTTC TGGACAAGCT GGTTTCAGCC ATGCGGTCAA AGACCTTTCG AGGTCAGATG  CGGATCGACG TCTATTCCGA AGACACTCCC GACTCTGCGG TTCCTTTTCC GACAACTGAC CGGGCTGGGG ATCTGCTGCG TCTGGGGGCG TTGGAGCGGG ACAAGTTGGT CACAGAAGAC  GAGATCCTGG GCCTGTCCGA CGGCATGAGG AAGATGTTCA CCCGCAAGGA TGGCAAAACC CTCAATCCCA CGCGGGCGAT CATCGGTGAT GCCCGCAACG ACGAAAACCT GATCATCGCC  CAGTTTCATC TGGTGTTCCT GCGCTTGCAC AACCGGCTGG TCCAGAACCG GCCCGGGCAT GTCAAAGCGT CGAAAGCCTT CGACTGGGCG CGGGATCGCA CGCGCTGGAT CTACCAATGG  CTGGTGGTCA ACGAATACCT GCGCAAGATC TGCCAGGAAG ACATTCTGGA CGACATTCTG GCCGCCGGTC CCGGGCTTTA CCAGAACTTC CTGGCCAACA GCGGATGCAC CGATGGCAAG  CTGCCCTTGC CGATCGAGTT TTCCGCCGCC GCGTTTCGTT TCGGCCATTC GATGGTGCGT GACGCCTATG ACTGGAACAC GTTCTTCGGG ACCAAAACGA CCCATGATCC AACCCTGCCT  GAGGCGGGTT CTCAGTTGCT TTTCGCCTTC ACCGGCGGCG GCGAGATGAA CGGCTTCCCG GTCGATCGTC TGCCCGGCAA CTGGGGGGCG GACTGGCAAC GGCTGATCTT TGCCGGGGCC  GGGGCGACGC CGACCGAGTT CGCCCGCAAG ATCGACACGC ATCTGGCGCT GGAGCTGGGC GCGCTGCCCG GCGGCACCGC GGGCACGATC ATGGCGCACC TGGCGCGGCG CAATCTGCGG  CGTGGGCATA TGCTGAACCT GCCGTCGGCA CAGGACTGCG CGGGCGAACT GGGCCTGGTC CCGCTCGGCA CCGCCGAACT GGGCGAAGGC GAGATCGCGC AGGTCCTGTC GCAAGGCGGG  CTGAGCGAGG CGACGCCGTT GTGGTACTAC GTCCTGCGCG AGGCGGAGGT ACGCAACAGC GGAGAGGCGC TCGGCCCGTT GGGCACGAAC CTCGTCGCCC AGACCCTGCT GGGGTTGGTG  CAGTCCGATC CGGGGTCGTA CTGGCACCAG ACCGGAACCG GCGGCGCACG CTGGACTCCA GCGGACCTCG TGGCGGACGG CTTGCCCGAC CTGTCCTCGA TCGAAGCGGT GATGCGATTC 
GGCGGACATC TTAGGTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTACTGTC AGCCCGACCA CGGAGGCCCC GCCGGCCCTT ACGGAAACAT CTACCGTTCA ACAATGTCCG CGTGCCGGTC CTTCGACTAT TTCTTTCCCG ATGCACCTGT TCAGGTCGCC  GATCCCGCGA GAGTGAAGGC GCTTGATGCG CTGGGGTTGG CCATGGTCAA ACGGGATCCT GTCGCTGGTG CGAATTCGGC CCTTGCGCCG GTCCTGACTT ACTTCGGCCA GTTCATCGAC  CACGACATCA CGGCCGGAAC CGACCGCGAC GGCGCGAACG AGATGATCGA CGCGCCTGAT CTGGCCCCGC GTTCGCGCGA AGCGGTGCGC ACCGAAAAGC AGAATATGCG GTCGGGTCGG  TTGGACCTCG ACAGCCTTTA CGGGGGGCTG CCCGACGGTG TTCCGCAGAA CCCGGCCGAC AAGGCTTTTC TGGACAAGCT GGTTTCAGCC ATGCGGTCAA AGACCTTTCG AGGTCAGATG  CGGATCGACG TCTATTCCGA AGACACTCCC GACTCTGCGG TTCCTTTTCC GACAACTGAC CGGGCTGGGG ATCTGCTGCG TCTGGGGGCG TTGGAGCGGG ACAAGTTGGT CACAGAAGAC  GAGATCCTGG GCCTGTCCGA CGGCATGAGG AAGATGTTCA CCCGCAAGGA TGGCAAAACC CTCAATCCCA CGCGGGCGAT CATCGGTGAT GCCCGCAACG ACGAAAACCT GATCATCGCC  CAGTTTCATC TGGTGTTCCT GCGCTTGCAC AACCGGCTGG TCCAGAACCG GCCCGGGCAT GTCAAAGCGT CGAAAGCCTT CGACTGGGCG CGGGATCGCA CGCGCTGGAT CTACCAATGG  CTGGTGGTCA ACGAATACCT GCGCAAGATC TGCCAGGAAG ACATTCTGGA CGACATTCTG GCCGCCGGTC CCGGGCTTTA CCAGAACTTC CTGGCCAACA GCGGATGCAC CGATGGCAAG  CTGCCCTTGC CGATCGAGTT TTCCGCCGCC GCGTTTCGTT TCGGCCATTC GATGGTGCGT GACGCCTATG ACTGGAACAC GTTCTTCGGG ACCAAAACGA CCCATGATCC AACCCTGCCT  GAGGCGGGTT CTCAGTTGCT TTTCGCCTTC ACCGGCGGCG GCGAGATGAA CGGCTTCCCG GTCGATCGTC TGCCCGGCAA CTGGGGGGCG GACTGGCAAC GGCTGATCTT TGCCGGGGCC  GGGGCGACGC CGACCGAGTT CGCCCGCAAG ATCGACACGC ATCTGGCGCT GGAGCTGGGC GCGCTGCCCG GCGGCACCGC GGGCACGATC ATGGCGCACC TGGCGCGGCG CAATCTGCGG  CGTGGGCATA TGCTGAACCT GCCGTCGGCA CAGGACTGCG CGGGCGAACT GGGCCTGGTC CCGCTCGGCA CCGCCGAACT GGGCGAAGGC GAGATCGCGC AGGTCCTGTC GCAAGGCGGG  CTGAGCGAGG CGACGCCGTT GTGGTACTAC GTCCTGCGCG AGGCGGAGGT ACGCAACAGC GGAGAGGCGC TCGGCCCGTT GGGCACGAAC CTCGTCGCCC AGACCCTGCT GGGGTTGGTG  CAGTCCGATC CGGGGTCGTA CTGGCACCAG ACCGGAACCG GCGGCGCACG CTGGACTCCA GCGGACCTCG TGGCGGACGG CTTGCCCGAC CTGTCCTCGA TCGAAGCGGT GATGCGATTC 
GGCGGACATC TTAGGTGA 

Retrieve as FASTA