The peroxidases and oxidases database
Entry information : BdiAPx05 (Bradi4g41180)
Entry ID 7891
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2011-01-17 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-01-19 (Toky Ramarohetra (Scipio))
Peroxidase information: BdiAPx05 (Bradi4g41180)
Name (synonym) BdiAPx05 (Bradi4g41180)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type Callus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx05
start..stop		 S start..stop
TaAPx03-1B 609 0 1..314 1..313
TaAPx03-1D 607 0 1..314 1..313
HvAPx05 604 0 1..314 1..312
TaAPx03-1A 604 0 1..314 1..312
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 45349922..45350008 87 N° 2 45350098..45350214 117 N° 3 45350611..45350731 121 N° 4 45350807..45350907 101
N° 5 45351006..45351093 88 N° 6 45351938..45352005 68 N° 7 45352101..45352187 87 N° 8 45352864..45352938 75
N° 9 45353019..45353096 78 N° 10 45353184..45353288 105 N° 11 45353376..45353393 18  
join(45349922..45350008,45350098..45350214,45350611..45350731,45350807..45350907 ,45351006..45351093,45351938..45352005,45352101..45352187,45352864..45352938,453 53019..45353096,45353184..45353288,45353376..45353393)


exon

Literature and cross-references BdiAPx05 (Bradi4g41180)
Literature Vogel,J.P., Gu,Y.Q., Twigg,P., Lazo,G.R., Laudencia-Chingcuanco,D., Hayden,D.M., Donze,T.J., Vivian,L.A., Stamova,B. and Coleman-Derr,D.
EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon.
Theor Appl Genet 113 (2), 186-195 (2006).
DNA ref. Phytozome 12:   Bd4 (45349922..45353393)
EST ref. GenBank:   DV470194.1 [5' end]
Protein sequence: BdiAPx05 (Bradi4g41180)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   314 (294)
PWM (Da):   %s   34298.51 (31293.6)  
PI (pH):   %s   7.34 (8.40) Peptide Signal:   %s   cut: 27 range:27-320
Sequence 642
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVHHHLLRRGLAGGSPLSPLRGLFLVSQELGRRQASSAAAGDAAAELRGAREDVRQLLKDKHCHPILVRLGWHDSGTYDKNISEWPKCGGANGSLRFEIELKHAANAGLVNALKLVQTIKDKYAGVTYADLFQLASATAIEAGGPKIPMIYGRVDVSAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLNDEIVALSGAHTLGRSRPERSGWGKPETKYTKNGPGATGGQSWTSQWLKFDNSYFKDVKERRDEDLLVLPTDAVLFEDPSFKIYAERYAEDQDTFFEDYAEAHAKLSNLGSKFDPPKGISLD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 10 introns), 1 EST. Cultivar="Bd21".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCACCTCCTCCGCCGCGGGCTCGCCGGCGGGTCCCCCCTCAGCCCTCTCCGCGGCCTCTTCCTCGTATCCCAGGTACGCATGACCAGCTGCTCCCGCCCTCGTCCA
TCACTCCACGCTGACGCGTCGGTTCCTGACCCCTTCTTGGCCTTCCCTCCTCGAAGGAGCTCGGGCGGCGTCAGGCGAGCTCGGCGGCGGCGGGGGATGCGGCGGCTGAGCTGAGGGGCG
CGCGGGAGGACGTCAGGCAGCTGCTTAAGGACAAGCACTGCCACCCCATCCTGGTATCGTACACACACACACAATCTTGCAATTTTTCATGGAAGAACGATCGCACGTTTTAAGCTTATT
CGAGTTCGAGCAGAGGAATGTCCGCGTTGGGCTTAAGAATAAAGATTATCTTCTGTCAGTTCAGAAATTTTGGTCACTTATGGTTTGCTATATGCTTAGTTCACTTACTTAATATGCTTG
TTATACAAGAGGAGGATGCTGTGAGTACTTATTGGGGCTGGGTGAACTAGTCTGTAGCATGTCCAATGCACAACTTTAATCCACTTGCTGTTCTTTGTTGTATGTGGATGGTCCCTGGTT
TTGCATTTTCTTGATCCAACGTTAAAACTGATGCACTCTCTCCAGATGCCTCTGTATGGCATTGTTTCCTGAACTGCTTCTGGTTTCAGGTTCGGTTGGGTTGGCACGACTCTGGCACTT
ATGACAAGAACATTAGCGAGTGGCCAAAGTGTGGTGGAGCGAATGGCAGCCTGAGATTTGAAATCGAGTTAAAGCATGCCGCTAATGCTGGTAGTGCTTCTCCCCCTCTTGTAATCTTTT
GCTTCATATGATCAAGGGATGGTTCTTAGACTAATTGTACTGCAGGCCTTGTGAATGCTCTGAAGCTGGTTCAAACCATCAAGGACAAATATGCCGGTGTCACTTATGCAGATCTGTTTC
AGCTTGCCAGTGCTACTGCCATTGAGGTCCTTCATGGCGCTTCAACCTACTGATGATGATCATCATAAAATGTTCTTTCTTTATATTAGCAATGATGTGATTGAATTGATTTCTCTCTTT
TCAGGAAGCTGGTGGCCCCAAAATCCCCATGATCTATGGAAGGGTTGATGTTTCTGCCCCTGAACAGTGCCCACCAGAGGGGAGACTCCCTGGTTAGTAACTAGTATCTATAACCCAACT
TACTCTATACGCCAATTTAGCTTATCTGGACATCTGTGTCTAGAGCTAGAATTTTACACTGCACCTTTAGTTCCATATGATATAATTTCTTCATCATATACTAACAAGATCTCAGTGATG
GAAGCTATGAATAATTATCTCGCAAACTTAAATGGATCACCGACCAAAACATTAACTAACAACCTCTCATCAAATTTGGACTGTGTTGTTTCCTAATTCCTGTGCTACTTCTCTCTGCTA
GGTTCCTAAAATATTAGTATAAACTTTGATGAGAACAGTACGGATACATGATGGACCTTCATTGTTCACGTGAAGGAAAATATACTCCCTCCGTTCCATAATTCTTGTCGAAATATTACA
TGTATCTAGACACTTTTTAGGAATAGATACATCCATTTTTGGTCAAATTTGAGACAAGAATTATGGAACGAAGGGAGTATTTAGCTAAAACATGTATTAAAAATTATCGCTATTCTTTAT
TCCATTTATTCATCTGTTTGATATAAACTTATGAGCTACCACATGCAATGTTTTAGAACTACCTCGTGGAGGTAATCTGCTTCAGGCTGACATGCCTCCTTGAGGATATCACCTGTATAT
AGGTGTTCATTTATCTGTAAGGTGCACTTTGGTGCACCCTATTCGAACACTAACAGAACATATTGATGCCATACCAACATCAACCTTGTAAAAAAAATGGACTACAGTGTTACATTTTTT
ATGCATGTTAGTGCTATAATATATTTTATGGTAGATTTAGTTATCAGCAACCAGCATTACTTACATGGTTATATTTATACTTTGCCACCATTCCAGCTGCTGGTCCGCCTTCACCTGCTG
AACATTTGCGGGAAGTATTCTACAGAATGGGCCTGAATGACAAGGTATGCAAAGACTGCTTTATTCCACCTTTTAACTATTCTGTAGGAGTACAAGATAATTCTGCATTTTCTTGTCTCA
TTTGTTTTGTGATGTGTAGGAAATTGTTGCATTGTCAGGAGCACACACACTTGGACGGTCAAGACCAGAGCGCAGTGGCTGGGGTAAACCAGAAACAAAATACACTGTACGTAAATTACT
GCTGTAGCTCATTGTTCTCATTTTTTTCTTTGGACATGCTCATTGTTCTCATTCAAAAGATGCCTTATTTATTAAAACATTTGTCAGAGCACTAGCTGAATGACGCATGCACTGCTAGAG
TAACAGAAGTAATAAATATAAATTATGAATAATCCAACCACGTGGCATGATTGCCATTCAAATCCGACGGTTTCAAAATTAATTTACACTTACTTAGAAATGAAAAGGCTGGAAAATATT
TAGATTTTTTGATAAAAGTTAAGCAGCACTTCATTAGTTCCTTGCATATACACATCCTGCAAAAGCACGCTTACAGATTGCTATTTCGTGCTACGTGCTGCCAATGCATTTATTTTCATT
CGGACAAGAAATTGTCATGTGTTTTCTTTCCATGATTCACAAGAACAAACATAAGACATATTTTATTCGTGTACACCGCTAGTGGCATTTATCAATATTATTGTGTGTCTTCAACAGTGA
ATGAGCTATATGAAAATGAACTATATTCCTGTCACCATCACTAACTTCTCTACTACAGAGCTTATCTTTTTACAAATATGTTCTTGTCGGTAGTACTTAGTACCATTATGTTCTCACTGA
AGAATGTTGTGAATGGTATATCATATTGTTCGCGTAATTGATTGCTGTACTTGACTTGCCAGAAAAACGGGCCTGGTGCAACTGGTGGGCAATCTTGGACATCTCAGTGGCTCAAGTTTG
ACAACAGCTATTTCAAGGTAAGATGCCTTATTTGCTATATGCTATAGTAATACCTGCAATTATGTTAACAGCTAAATAATACACATAAATTTTTCAGGATGTTAAAGAGCGACGAGATGA
GGACCTTCTAGTTCTGCCTACAGATGCTGTGCTCTTTGAGGACCCATCATTTAAGGTTAGTGATGATTCTCATATTACAAAATGAACTGCACATATTTAGCTGATTCTCTGAACTGTATT
TCGTGTGTTGCCATGCTTGAAGATTTATGCTGAAAGGTATGCTGAGGATCAGGATACATTTTTTGAAGACTATGCTGAAGCTCATGCTAAATTGAGTAATCTCGGGTCTAAGTTTGATCC
TCCGAAGGTAAATGAGATTAAAAGAAATGATTCCTTAGAGCTAGGAAAACATGCTATAAGTTCATGCCGACATGCTTACATTGAAATTATGCAGGGTATATCACTGGACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCACCTCCTCCGCCGCGGGCTCGCCGGCGGGTCCCCCCTCAGCCCTCTCCGCGGCCTCTTCCTCGTATCCCAGGAGCTCGGGCGGCGTCAGGCGAGCTCGGCGGCG
GCGGGGGATGCGGCGGCTGAGCTGAGGGGCGCGCGGGAGGACGTCAGGCAGCTGCTTAAGGACAAGCACTGCCACCCCATCCTGGTTCGGTTGGGTTGGCACGACTCTGGCACTTATGAC
AAGAACATTAGCGAGTGGCCAAAGTGTGGTGGAGCGAATGGCAGCCTGAGATTTGAAATCGAGTTAAAGCATGCCGCTAATGCTGGCCTTGTGAATGCTCTGAAGCTGGTTCAAACCATC
AAGGACAAATATGCCGGTGTCACTTATGCAGATCTGTTTCAGCTTGCCAGTGCTACTGCCATTGAGGAAGCTGGTGGCCCCAAAATCCCCATGATCTATGGAAGGGTTGATGTTTCTGCC
CCTGAACAGTGCCCACCAGAGGGGAGACTCCCTGCTGCTGGTCCGCCTTCACCTGCTGAACATTTGCGGGAAGTATTCTACAGAATGGGCCTGAATGACAAGGAAATTGTTGCATTGTCA
GGAGCACACACACTTGGACGGTCAAGACCAGAGCGCAGTGGCTGGGGTAAACCAGAAACAAAATACACTAAAAACGGGCCTGGTGCAACTGGTGGGCAATCTTGGACATCTCAGTGGCTC
AAGTTTGACAACAGCTATTTCAAGGATGTTAAAGAGCGACGAGATGAGGACCTTCTAGTTCTGCCTACAGATGCTGTGCTCTTTGAGGACCCATCATTTAAGATTTATGCTGAAAGGTAT
GCTGAGGATCAGGATACATTTTTTGAAGACTATGCTGAAGCTCATGCTAAATTGAGTAATCTCGGGTCTAAGTTTGATCCTCCGAAGGGTATATCACTGGACTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CAAACACGCG GACCAACGAA CTACCCCAAA ACCCTTCTTC CTTCTCCCCC CGCCGCCGGC GCCGACATGG CCGTCCACCA CCACCTCCTC CGCCGCGGGC TCGCCGGCGG GTCCCCCCTC  AGCCCTCTCC GCGGCCTCTT CCTCGTATCC CAGGAGCTCG GGCGGCGTCA GGCGAGCTCG GCGGCGGCGG GGGATGCGGC GGCTGAGCTG AGGGGCGCGC GGGAGGACGT CAGGCAGCTG  CTTAAGGACA AGCACTGCCA CCCCATCCTG GTTCGGTTGG GTTGGCACGA CTCTGGCACT TATGACAAGA ACATTAGCGA GTGGCCAAAG TGTGGTGGAG CGAATGGCAG CCTGAGATTT  GAAATCGAGT TAAAGCATGC CGCTAATGCT GGCCTTGTGA ATGCTCTGAA GCTGGTTCAA ACCATCAAGG ACAAATATGC CGGTGTCACT TATGCAGATC TGTTTCAGCT TGCCAGTGCT  ACTGCCATTG AGGAAGCTGG TGGCCCCAAA ATCCCCATGA TCTATGGAAG GGTTGATGTT TCTGCCCCTG AACAGTGCCC ACCAGAGGGG AGACTCCCTG CTGCTGGTCC GCCTTCACCT  GCTGAACATT TGCGGGAAGT ATTCTACAGA ATGGGCCTGA ATGACAAGGA AATTGTTGCA TTGTCAGGAG CACACACACT TGGACGGTCA AGACCAGAGC GCAGTGGCTG GGGTAAACCA  GAAACAAAAT ACACTAAAAA CGGGCCTGGT GCAACTGGTG GGCAATCTTG GACATCTCAG TGGCTCAAGT TTGACAACAG CTATTTCAAG GATGTTAAAG AGCGACGAGA TGAGGACCTT  CTAGTTCTGC CTACAGATGC TGTGCTCTTT GAGGACCCAT CATTTAAGAT TTATGCTGAA AGGTATGCTG AGGATCAGGA TACATTTTTT GAAGACTATG CTGAAGCTCA TGCTAAATTG  AGTAATCTCG GGTCTAAGTT TGATCCTCCG AAGGGTATAT CACTGGACTA GCTGACATCA ACTACTGATG AACTGCATTT CTTGCAATAA ATTTTGAAGC ATATGGTCAT GGAGCTTGGT  TCTGGTTTTA TGACCGCTCC AACATATTGG ATCAACGAGA GCAGTATTTT GAGCTGTGTG CACCACTACG AGAAATAAAA GCAGCATTGA ACAATTCCAG CACCAAAGAT TTGTTACATT 
TAAGATACTT GTTGTACGGT ACTGTATCGA GATCCTACAT GGTGGTGATA AAAAAAAAAT CAAGCAGTTG GTCTTTCACT C 

Retrieve as FASTA