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Entry information : BdiAPx05 (Bradi4g41180)
Entry ID 7891
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2011-01-17 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-01-19 (Toky Ramarohetra (Scipio))
Peroxidase information: BdiAPx05 (Bradi4g41180)
Name (synonym) BdiAPx05 (Bradi4g41180)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type Callus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx05
start..stop		 S start..stop
TaAPx03-1B 609 0 1..314 1..313
TaAPx03-1D 607 0 1..314 1..313
HvAPx05 604 0 1..314 1..312
TaAPx03-1A 604 0 1..314 1..312
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7891' 'join(45349922..45350008,45350098..45350214,45350611..45350731,45350807..45350907,45351006..45351093,45351938..45352005,45352101..45352187,45352864..45352938,45353019..45353096,45353184..45353288,45353376..45353393)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 45349922..45350008 85 N° 2 45350098..45350214 115 N° 3 45350611..45350731 119 N° 4 45350807..45350907 99
N° 5 45351006..45351093 86 N° 6 45351938..45352005 66 N° 7 45352101..45352187 85 N° 8 45352864..45352938 73
N° 9 45353019..45353096 76 N° 10 45353184..45353288 103 N° 11 45353376..45353393 16  
join(45349922..45350008,45350098..45350214,45350611..45350731,45350807..45350907 ,45351006..45351093,45351938..45352005,45352101..45352187,45352864..45352938,453 53019..45353096,45353184..45353288,45353376..45353393)


exon

Literature and cross-references BdiAPx05 (Bradi4g41180)
Literature Vogel,J.P., Gu,Y.Q., Twigg,P., Lazo,G.R., Laudencia-Chingcuanco,D., Hayden,D.M., Donze,T.J., Vivian,L.A., Stamova,B. and Coleman-Derr,D.
EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon.
Theor Appl Genet 113 (2), 186-195 (2006).
DNA ref. Phytozome 12:   Bd4 (45349922..45353393)
EST ref. GenBank:   DV470194.1 [5' end]
Protein sequence: BdiAPx05 (Bradi4g41180)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   314 (294)
PWM (Da):   %s   34298.51 (31293.6)  
PI (pH):   %s   7.34 (8.40) Peptide Signal:   %s   cut: 27 range:27-320
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVHHHLLRRGLAGGSPLSPLRGLFLVSQELGRRQASSAAAGDAAAELRGAREDVRQLLKDKHCHPILVRLGWHDSGTYDKNISEWPKCGGANGSLRFEIELKHAANAGLVNALKLVQTIKDKYAGVTYADLFQLASATAIEAGGPKIP
MIYGRVDVSAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLNDEIVALSGAHTLGRSRPERSGWGKPETKYTKNGPGATGGQSWTSQWLKFDNSYFKDVKERRDEDLLVLPTDAVLFEDP
SFKIYAERYAEDQDTFFEDYAEAHAKLSNLGSKFDPPKGISLD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 10 introns), 1 EST. Cultivar="Bd21".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCACCTCCTCCGCCGCGGGCTCGCCGGCGGGTCCCCCCTCAGCCCTCTCCGCGGCCTCTTCCTCGTATCCCAGAGGTACGCATGACCAGCTGCTCCCGCCCTCGTC
CATCACTCCACGCTGACGCGTCGGTTCCTGACCCCTTCTTGGCCTTCCCTCCTCGAAGGAGCTCGGGCGGCGTCAGGCGAGCTCGGCGGCGGCGGGGGATGCGGCGGCTGAGCTGAGGGG
CGCGCGGGAGGACGTCAGGCAGCTGCTTAAGGACAAGCACTGCCACCCCATCCTGTGGTATCGTACACACACACACAATCTTGCAATTTTTCATGGAAGAACGATCGCACGTTTTAAGCT
TATTCGAGTTCGAGCAGAGGAATGTCCGCGTTGGGCTTAAGAATAAAGATTATCTTCTGTCAGTTCAGAAATTTTGGTCACTTATGGTTTGCTATATGCTTAGTTCACTTACTTAATATG
CTTGTTATACAAGAGGAGGATGCTGTGAGTACTTATTGGGGCTGGGTGAACTAGTCTGTAGCATGTCCAATGCACAACTTTAATCCACTTGCTGTTCTTTGTTGTATGTGGATGGTCCCT
GGTTTTGCATTTTCTTGATCCAACGTTAAAACTGATGCACTCTCTCCAGATGCCTCTGTATGGCATTGTTTCCTGAACTGCTTCTGGTTTCAGGTTCGGTTGGGTTGGCACGACTCTGGC
ACTTATGACAAGAACATTAGCGAGTGGCCAAAGTGTGGTGGAGCGAATGGCAGCCTGAGATTTGAAATCGAGTTAAAGCATGCCGCTAATGCTGTGGTAGTGCTTCTCCCCCTCTTGTAA
TCTTTTGCTTCATATGATCAAGGGATGGTTCTTAGACTAATTGTACTGCAGGCCTTGTGAATGCTCTGAAGCTGGTTCAAACCATCAAGGACAAATATGCCGGTGTCACTTATGCAGATC
TGTTTCAGCTTGCCAGTGCTACTGCCATTGAGAGGTCCTTCATGGCGCTTCAACCTACTGATGATGATCATCATAAAATGTTCTTTCTTTATATTAGCAATGATGTGATTGAATTGATTT
CTCTCTTTTCAGGAAGCTGGTGGCCCCAAAATCCCCATGATCTATGGAAGGGTTGATGTTTCTGCCCCTGAACAGTGCCCACCAGAGGGGAGACTCCCTGTGGTTAGTAACTAGTATCTA
TAACCCAACTTACTCTATACGCCAATTTAGCTTATCTGGACATCTGTGTCTAGAGCTAGAATTTTACACTGCACCTTTAGTTCCATATGATATAATTTCTTCATCATATACTAACAAGAT
CTCAGTGATGGAAGCTATGAATAATTATCTCGCAAACTTAAATGGATCACCGACCAAAACATTAACTAACAACCTCTCATCAAATTTGGACTGTGTTGTTTCCTAATTCCTGTGCTACTT
CTCTCTGCTAGGTTCCTAAAATATTAGTATAAACTTTGATGAGAACAGTACGGATACATGATGGACCTTCATTGTTCACGTGAAGGAAAATATACTCCCTCCGTTCCATAATTCTTGTCG
AAATATTACATGTATCTAGACACTTTTTAGGAATAGATACATCCATTTTTGGTCAAATTTGAGACAAGAATTATGGAACGAAGGGAGTATTTAGCTAAAACATGTATTAAAAATTATCGC
TATTCTTTATTCCATTTATTCATCTGTTTGATATAAACTTATGAGCTACCACATGCAATGTTTTAGAACTACCTCGTGGAGGTAATCTGCTTCAGGCTGACATGCCTCCTTGAGGATATC
ACCTGTATATAGGTGTTCATTTATCTGTAAGGTGCACTTTGGTGCACCCTATTCGAACACTAACAGAACATATTGATGCCATACCAACATCAACCTTGTAAAAAAAATGGACTACAGTGT
TACATTTTTTATGCATGTTAGTGCTATAATATATTTTATGGTAGATTTAGTTATCAGCAACCAGCATTACTTACATGGTTATATTTATACTTTGCCACCATTCCAGCTGCTGGTCCGCCT
TCACCTGCTGAACATTTGCGGGAAGTATTCTACAGAATGGGCCTGAATGACAAGAGGTATGCAAAGACTGCTTTATTCCACCTTTTAACTATTCTGTAGGAGTACAAGATAATTCTGCAT
TTTCTTGTCTCATTTGTTTTGTGATGTGTAGGAAATTGTTGCATTGTCAGGAGCACACACACTTGGACGGTCAAGACCAGAGCGCAGTGGCTGGGGTAAACCAGAAACAAAATACACTCT
GTACGTAAATTACTGCTGTAGCTCATTGTTCTCATTTTTTTCTTTGGACATGCTCATTGTTCTCATTCAAAAGATGCCTTATTTATTAAAACATTTGTCAGAGCACTAGCTGAATGACGC
ATGCACTGCTAGAGTAACAGAAGTAATAAATATAAATTATGAATAATCCAACCACGTGGCATGATTGCCATTCAAATCCGACGGTTTCAAAATTAATTTACACTTACTTAGAAATGAAAA
GGCTGGAAAATATTTAGATTTTTTGATAAAAGTTAAGCAGCACTTCATTAGTTCCTTGCATATACACATCCTGCAAAAGCACGCTTACAGATTGCTATTTCGTGCTACGTGCTGCCAATG
CATTTATTTTCATTCGGACAAGAAATTGTCATGTGTTTTCTTTCCATGATTCACAAGAACAAACATAAGACATATTTTATTCGTGTACACCGCTAGTGGCATTTATCAATATTATTGTGT
GTCTTCAACAGTGAATGAGCTATATGAAAATGAACTATATTCCTGTCACCATCACTAACTTCTCTACTACAGAGCTTATCTTTTTACAAATATGTTCTTGTCGGTAGTACTTAGTACCAT
TATGTTCTCACTGAAGAATGTTGTGAATGGTATATCATATTGTTCGCGTAATTGATTGCTGTACTTGACTTGCCAGAAAAACGGGCCTGGTGCAACTGGTGGGCAATCTTGGACATCTCA
GTGGCTCAAGTTTGACAACAGCTATTTCAAGAGGTAAGATGCCTTATTTGCTATATGCTATAGTAATACCTGCAATTATGTTAACAGCTAAATAATACACATAAATTTTTCAGGATGTTA
AAGAGCGACGAGATGAGGACCTTCTAGTTCTGCCTACAGATGCTGTGCTCTTTGAGGACCCATCATTTAAGAGGTTAGTGATGATTCTCATATTACAAAATGAACTGCACATATTTAGCT
GATTCTCTGAACTGTATTTCGTGTGTTGCCATGCTTGAAGATTTATGCTGAAAGGTATGCTGAGGATCAGGATACATTTTTTGAAGACTATGCTGAAGCTCATGCTAAATTGAGTAATCT
CGGGTCTAAGTTTGATCCTCCGAAGAGGTAAATGAGATTAAAAGAAATGATTCCTTAGAGCTAGGAAAACATGCTATAAGTTCATGCCGACATGCTTACATTGAAATTATGCAGGGTATA
TCACTGGACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCACCTCCTCCGCCGCGGGCTCGCCGGCGGGTCCCCCCTCAGCCCTCTCCGCGGCCTCTTCCTCGTATCCCAGGAGCTCGGGCGGCGTCAGGCGAGCTCGGCGGCG
GCGGGGGATGCGGCGGCTGAGCTGAGGGGCGCGCGGGAGGACGTCAGGCAGCTGCTTAAGGACAAGCACTGCCACCCCATCCTGGTTCGGTTGGGTTGGCACGACTCTGGCACTTATGAC
AAGAACATTAGCGAGTGGCCAAAGTGTGGTGGAGCGAATGGCAGCCTGAGATTTGAAATCGAGTTAAAGCATGCCGCTAATGCTGGCCTTGTGAATGCTCTGAAGCTGGTTCAAACCATC
AAGGACAAATATGCCGGTGTCACTTATGCAGATCTGTTTCAGCTTGCCAGTGCTACTGCCATTGAGGAAGCTGGTGGCCCCAAAATCCCCATGATCTATGGAAGGGTTGATGTTTCTGCC
CCTGAACAGTGCCCACCAGAGGGGAGACTCCCTGCTGCTGGTCCGCCTTCACCTGCTGAACATTTGCGGGAAGTATTCTACAGAATGGGCCTGAATGACAAGGAAATTGTTGCATTGTCA
GGAGCACACACACTTGGACGGTCAAGACCAGAGCGCAGTGGCTGGGGTAAACCAGAAACAAAATACACTAAAAACGGGCCTGGTGCAACTGGTGGGCAATCTTGGACATCTCAGTGGCTC
AAGTTTGACAACAGCTATTTCAAGGATGTTAAAGAGCGACGAGATGAGGACCTTCTAGTTCTGCCTACAGATGCTGTGCTCTTTGAGGACCCATCATTTAAGATTTATGCTGAAAGGTAT
GCTGAGGATCAGGATACATTTTTTGAAGACTATGCTGAAGCTCATGCTAAATTGAGTAATCTCGGGTCTAAGTTTGATCCTCCGAAGGGTATATCACTGGACTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CAAACACGCG GACCAACGAA CTACCCCAAA ACCCTTCTTC CTTCTCCCCC CGCCGCCGGC GCCGACATGG CCGTCCACCA CCACCTCCTC CGCCGCGGGC TCGCCGGCGG GTCCCCCCTC  AGCCCTCTCC GCGGCCTCTT CCTCGTATCC CAGGAGCTCG GGCGGCGTCA GGCGAGCTCG GCGGCGGCGG GGGATGCGGC GGCTGAGCTG AGGGGCGCGC GGGAGGACGT CAGGCAGCTG  CTTAAGGACA AGCACTGCCA CCCCATCCTG GTTCGGTTGG GTTGGCACGA CTCTGGCACT TATGACAAGA ACATTAGCGA GTGGCCAAAG TGTGGTGGAG CGAATGGCAG CCTGAGATTT  GAAATCGAGT TAAAGCATGC CGCTAATGCT GGCCTTGTGA ATGCTCTGAA GCTGGTTCAA ACCATCAAGG ACAAATATGC CGGTGTCACT TATGCAGATC TGTTTCAGCT TGCCAGTGCT  ACTGCCATTG AGGAAGCTGG TGGCCCCAAA ATCCCCATGA TCTATGGAAG GGTTGATGTT TCTGCCCCTG AACAGTGCCC ACCAGAGGGG AGACTCCCTG CTGCTGGTCC GCCTTCACCT  GCTGAACATT TGCGGGAAGT ATTCTACAGA ATGGGCCTGA ATGACAAGGA AATTGTTGCA TTGTCAGGAG CACACACACT TGGACGGTCA AGACCAGAGC GCAGTGGCTG GGGTAAACCA  GAAACAAAAT ACACTAAAAA CGGGCCTGGT GCAACTGGTG GGCAATCTTG GACATCTCAG TGGCTCAAGT TTGACAACAG CTATTTCAAG GATGTTAAAG AGCGACGAGA TGAGGACCTT  CTAGTTCTGC CTACAGATGC TGTGCTCTTT GAGGACCCAT CATTTAAGAT TTATGCTGAA AGGTATGCTG AGGATCAGGA TACATTTTTT GAAGACTATG CTGAAGCTCA TGCTAAATTG  AGTAATCTCG GGTCTAAGTT TGATCCTCCG AAGGGTATAT CACTGGACTA GCTGACATCA ACTACTGATG AACTGCATTT CTTGCAATAA ATTTTGAAGC ATATGGTCAT GGAGCTTGGT  TCTGGTTTTA TGACCGCTCC AACATATTGG ATCAACGAGA GCAGTATTTT GAGCTGTGTG CACCACTACG AGAAATAAAA GCAGCATTGA ACAATTCCAG CACCAAAGAT TTGTTACATT 
TAAGATACTT GTTGTACGGT ACTGTATCGA GATCCTACAT GGTGGTGATA AAAAAAAAAT CAAGCAGTTG GTCTTTCACT C 

Retrieve as FASTA