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Entry information : BdiAPx06 (Bradi5g03640)
Entry ID 7894
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2011-01-17 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-01-19 (Toky Ramarohetra (Scipio))
Peroxidase information: BdiAPx06 (Bradi5g03640)
Name (synonym) BdiAPx06 (Bradi5g03640)
Class Ascorbate peroxidase    [Orthogroup: APx2005]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type Flowers
Inducers Abiotic stress
Drought
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx06
start..stop		 S start..stop
OsAPx03 478 6.84e-173 3..293 2..290
SiAPx10 472 1.95e-170 1..293 1..291
TaAPx07-1D 469 2.78e-169 2..293 3..293
TaAPx07-1B 469 4.19e-169 2..293 5..295
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4449330..4449448 117 N° 2 4449110..4449234 123 N° 3 4448907..4449022 114 N° 4 4448766..4448814 47
N° 5 4448552..4448634 81 N° 6 4448377..4448456 78 N° 7 4447788..4447890 101 N° 8 4447500..4447709 208
complement(join(4447500..4447709,4447788..4447890,4448377..4448456,4448552..4448 634,4448766..4448814,4448907..4449022,4449110..4449234,4449330..4449448))


exon

Literature and cross-references BdiAPx06 (Bradi5g03640)
Literature Lucas,S., Rokhsar,D., Wang,M., Lindquist,E.A., Fox,S.E., Vogel,J.,
Bragg,J.N., McKenzie,N., Bevan,M.W., Garvin,D., Michael,T., Hazen,S., Chang,J., Laudencia-Chingcuanco,D., Weng,Y. and Mockler,T.
DOE Joint Genome Institute Brachypodium distachyon EST project.
Unpublished (2009).
DNA ref. Phytozome 12:   Bd5 (4449448..4447500)
EST ref. GenBank:   GT817436.1 [5' end]  GT799467.1 [3' end]
Protein sequence: BdiAPx06 (Bradi5g03640)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   294
PWM (Da):   %s   31965.58 Transmb domain:   %s   i265-287o
PI (pH):   %s   9.14
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSVAPVVNAEYMAEIDKARRDLRALIASKSCAPIMLRLAWHDAGTYDKKTNTGGPNGSIRFPEEHSHAANAGLKVAIDLEPIKQKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRDS
SVCPEEGRLPDAKQGAAHLRDVFYRMGLSDKDIVALSGGHTGKARPDRSGFDGAWTKDPLKFDNSYFVELLKGETDGLLKLPTDKVLVEDPVFRRYVELYADEDAFFRDYAESHKKLSEL
GFKPPRAAALAYKSSGGNMKGLLTRTATMVAVAAAVVAWAYLHGPNKKLD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, 7 introns), 5 ESTs. Strain="Bd21".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGTCGGTGGCACCGGTGGTGAACGCAGAGTACATGGCGGAGATCGACAAGGCGCGGCGGGACCTCCGTGCGCTCATCGCCAGCAAGAGCTGCGCTCCCATCATGCTCCGCCTCGCG
TACTTACGATTCTCACAGCCATAGCATTTCTCGCTTAAGCAATGTTGGTTGTCAGGTTTTGATTAGAAATTTTCTCGCTTGATCATGGGTGCAGATATGGCATGATGCTGGCACCTACGA
CAAGAAGACCAACACCGGAGGGCCCAACGGCTCGATCAGGTTCCCGGAGGAGCACAGCCACGCTGCAAATGCAGGGCTCAAGGTCGCCATCGACCTTCTAGGTTGGCCAGCACTTATAAT
TTTTGAAGTAGTGATTTTCAAGCAGTCTGATGCTCGTAAATAAACCTTTCCAATTCCCTGTGTTGCAGAAAACCGATTAAGCAAAAGCACCCCAAGATCACATATGCAGACCTCTACCAG
CTTGCCGGAGTTGTGGCCGTTGAAGTCACCGGTGGACCAACAATAGATTTCGTTCCTGGCAGGAGGGTAAGTTAACAGAAACAATGTCGTTTCCTTATTACAGAACCAAGCATCCTAGTC
TAAGCATCTTAGTTTCGCTTTTCGCGTATGTATACCAGGAGATTCTTCAGTTTGCCCGGAGGAAGGACGCTTGCCAGATGCTAAGCAAGGTAACCAGGTGCATTCCTTTTATTATTAATT
TATTATGTATTTTATAATTTGGAACAGAGGTTGTAATTTTGAACCGGTGAACTTTTAGTGTGGTAAAAATGTTGCATTCTTTCTGTTATCATGTCACAAGGTGTGCTGCACACCTGAGGG
ATGTCTTCTACCGGATGGGTTTGTCTGACAAAGACATCGTAGCACTCTCCGGTGGCCATACTCTGGTAATGCAACAAACATCTTGTTCACATAACGGTTCATCAGCAACCCCCATTTCTT
TTGCTGACAAGTTCTTGTTCTGCATTTCACACATTCTCAGGGGGGAAGGCACGTCCGGATAGATCGGGATTCGACGGTGCTTGGACAAAGGATCCTCTTAAGTTCGACAACTCTTATTTT
GTGTAAGATTAAACACAACATATTCATCGAATGCTCATTAGTTTCAGACTGTAGAGTATAATTAATGCCACCACAACATTAATCAGGAGTTCCTAAGTATATTTGTCGTCTCTCAACTTG
TTGAAAAGTACGCAAACCAGACATCAATGGTCCATCGCCGCATCCAAAGTGGTATTAGTGTCATCTCACCATGGTTTTGGCCTAGCAATTATCATGTTAGCCTGTCAAATTGGCATCACT
TTTCGTTTTTTTGCCTCGAGTCAAATTGGTTCCACCAAAGAAACCTAAGCCAGTATGGTAATTCAAGGCCAGAACCATAACATATCAGCACTAATACCACTTCAAATGAGGGGAAAAATC
ATTGTTGTCCGGTTCGATAATCGAGGGACTAAAAGTGTATGAAAAAAATTGAGACACTATTTGCATACTTTTCAACAAATTGAGAGACAAAAAATATATTTTTCTCAATATAATTACATA
TGCTGCAGTGTGAGCTTCTGAAAGGGGAAACTGATGGGCTCCTGAAGCTGCCTACGGACAAGGTTCTCGTGGAAGACCCCGTTTTCCGCCGGTATGTGGAACTATATGCCAAGGTACACC
AGAGTTCAGATGGGGAGTTCTTCAGACCCATGCCGCCTAGCTACAACTGACAACTTATTTTGCGCATGCAGGAGACGAGGACGCCTTCTTCAGGGACTATGCGGAGTCGCACAAAAAGCT
CTCCGAGCTCGGCTTCAAGCCTCCTCGCGCTGCTGCTCTGGCGTACAAATCGTCCGGAGGCAACATGAAGGGATTACTGACGAGAACTGCAACCATGGTAGCGGTTGCTGCTGCTGTCGT
GGCTTGGGCTTACCTACACGGACCCAACAAGAAGCTTGACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGTCGGTGGCACCGGTGGTGAACGCAGAGTACATGGCGGAGATCGACAAGGCGCGGCGGGACCTCCGTGCGCTCATCGCCAGCAAGAGCTGCGCTCCCATCATGCTCCGCCTCGCA
TGGCATGATGCTGGCACCTACGACAAGAAGACCAACACCGGAGGGCCCAACGGCTCGATCAGGTTCCCGGAGGAGCACAGCCACGCTGCAAATGCAGGGCTCAAGGTCGCCATCGACCTT
CTAGAACCGATTAAGCAAAAGCACCCCAAGATCACATATGCAGACCTCTACCAGCTTGCCGGAGTTGTGGCCGTTGAAGTCACCGGTGGACCAACAATAGATTTCGTTCCTGGCAGGAGG
GATTCTTCAGTTTGCCCGGAGGAAGGACGCTTGCCAGATGCTAAGCAAGGTGCTGCACACCTGAGGGATGTCTTCTACCGGATGGGTTTGTCTGACAAAGACATCGTAGCACTCTCCGGT
GGCCATACTCTGGGGAAGGCACGTCCGGATAGATCGGGATTCGACGGTGCTTGGACAAAGGATCCTCTTAAGTTCGACAACTCTTATTTTGTTGAGCTTCTGAAAGGGGAAACTGATGGG
CTCCTGAAGCTGCCTACGGACAAGGTTCTCGTGGAAGACCCCGTTTTCCGCCGGTATGTGGAACTATATGCCAAGGACGAGGACGCCTTCTTCAGGGACTATGCGGAGTCGCACAAAAAG
CTCTCCGAGCTCGGCTTCAAGCCTCCTCGCGCTGCTGCTCTGGCGTACAAATCGTCCGGAGGCAACATGAAGGGATTACTGACGAGAACTGCAACCATGGTAGCGGTTGCTGCTGCTGTC
GTGGCTTGGGCTTACCTACACGGACCCAACAAGAAGCTTGACTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCCTTTTCTT CCTACAAAAC TGCGCCGCTT TTCCTATCCT TCACCAACAA CTCCAACGTA GAGCTTGCTC TGTTTCCTTC CAAAGAGATC TCGAGTAAGC AATTAACTGC GCACAAAGAT  GTCGTCGGTG GCACCGGTGG TGAACGCAGA GTACATGGCG GAGATCGACA AGGCGCGGCG GGACCTCCGT GCGCTCATCG CCAGCAAGAG CTGCGCTCCC ATCATGCTCC GCCTCGCATG  GCATGATGCT GGCACCTACG ACAAGAAGAC CAACACCGGA GGGCCCAACG GCTCGATCAG GTTCCCGGAG GAGCACAGCC ACGCTGCAAA TGCAGGGCTC AAGGTCGCCA TCGACCTTCT  AGAACCGATT AAGCAAAAGC ACCCCAAGAT CACATATGCA GACCTCTACC AGCTTGCCGG AGTTGTGGCC GTTGAAGTCA CCGGTGGACC AACAATAGAT TTCGTTCCTG GCAGGAGGGA  TTCTTCAGTT TGCCCGGAGG AAGGACGCTT GCCAGATGCT AAGCAAGGTG CTGCACACCT GAGGGATGTC TTCTACCGGA TGGGTTTGTC TGACAAAGAC ATCGTAGCAC TCTCCGGTGG  CCATACTCTG GGGAAGGCAC GTCCGGATAG ATCGGGATTC GACGGTGCTT GGACAAAGGA TCCTCTTAAG TTCGACAACT CTTATTTTGT TGAGCTTCTG AAAGGGGAAA CTGATGGGCT  CCTGAAGCTG CCTACGGACA AGGTTCTCGT GGAAGACCCC GTTTTCCGCC GGTATGTGGA ACTATATGCC AAGGACGAGG ACGCCTTCTT CAGGGACTAT GCGGAGTCGC ACAAAAAGCT  CTCCGAGCTC GGCTTCAAGC CTCCTCGCGC TGCTGCTCTG GCGTACAAAT CGTCCGGAGG CAACATGAAG GGATTACTGA CGAGAACTGC AACCATGGTA GCGGTTGCTG CTGCTGTCGT  GGCTTGGGCT TACCTACACG GACCCAACAA GAAGCTTGAC TGATTCCATC TGTACATCGT CACGATTCCT CTTACTCTGT GATGGGTGCT GGGAAACAAA GTTAACGTTC AGATTTGTCC  AATTGTGTGT CTGTACATGG ACTGTGAATG TTGTGTTTGT GATGTCGCAC AGAAATGAAA TAAGATAATT TGCAGTTGTA TGAGGAATCA ATTATGTTTC AAGTTATAAA CAACACTTCT 
TTTTA 

Retrieve as FASTA