Entry information : BdiAPx01 (Bradi1g16510)
Entry ID 7906
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2011-01-17 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-01-19 (Toky Ramarohetra (Scipio))
Peroxidase information: BdiAPx01 (Bradi1g16510)
Name (synonym) BdiAPx01 (Bradi1g16510)
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx01
start..stop
S start..stop
HvAPx03 503 0 1..256 1..256
TaAPx04 499 0 1..256 1..254
ZmAPx02_B73 471 3e-171 4..248 3..247
SbAPx02 470 8e-171 4..248 3..247
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 13366543..13366664 122 N° 2 13366740..13366914 175 N° 3 13367004..13367069 66 N° 4 13368189..13368237 49
N° 5 13368577..13368662 86 N° 6 13368754..13368833 80 N° 7 13368963..13369065 103 N° 8 13369181..13369239 59
N° 9 13369337..13369367 31  
join(13366543..13366664,13366740..13366914,13367004..13367069,13368189..13368237 ,13368577..13368662,13368754..13368833,13368963..13369065,13369181..13369239,133 69337..13369367)


exon

Literature and cross-references BdiAPx01 (Bradi1g16510)
DNA ref. Phytozome 12:   Bd1 (13366543..13369367)
EST ref. GenBank:   DV480596.1 [5' end]   DV475156.1 [3' end]
Protein sequence: BdiAPx01 (Bradi1g16510)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   256
PWM (Da):   %s   27612.88  
PI (pH):   %s   5.15
Sequence 297
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAKCYPTVTDEYQTAVAKAKRKLRGLIAEKNCAPLMLRLAWHSAGTFDVATKTGGPFGTIKCPAELAHGANAGLDIAVRLLEPIKDQFPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSTQMGLSDQDIVALSGGHTLGRCHKERSGFEGAWTANPLIFDNSYFKELLSGEKEGLLQLPTDKTLLSDPAFRPLVDKYAADEDAFFADYAEAHLKLSELGFGGYFEGCC

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 8 introns), 10 ESTs. Cultivar="Bd21-0".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCCGCCAAGTGCTACCCAACAGTCACCGATGAGTACCAGACGGCCGTCGCCAAGGCCAAGCGCAAGCTCCGCGGCCTCATCGCCGAGAAGAACTGCGCCCCTCTCATGCTGCGCCTCG
C
GTGCGTATATCTTCTCTCTTCTCTTCCGACCTCGCTAGACTAGAGTTGCTAGATCTGACCATTCTCTCTCTGCAGGTGGCACTCGGCGGGGACCTTCGACGTCGCCACCAAGACCGGCG
GCCCCTTCGGAACCATCAAGTGCCCCGCGGAGCTCGCGCACGGCGCCAACGCGGGCCTCGACATCGCCGTCAGGCTACTCGAGCCCATCAAGGACCAATTCCCCATCCTCTCCTACGCCG
ACTTCTACCAG
GTCAGCGATCCCATCCTCTCCTACGCCGAGATCTGGAATTTGTTCTACTTTTCTTAAATTTATTTTTTGCCTTTTATGCTCTGTGGCAGCTCGCTGGAGTCGTGGCCGT
CGAGGTGACCGGCGGACCTGAGGTTCCATTCCACCCGGGCAGACAG
GTGACCATACTTTTCAATTTCCCTGCCCAACTGCGATTTCTCTACAGGGCCCGCTGTTTCGTTACTTTTACCTG
CCGCGACCTAAGATAGTAGTGCCAACCATTTCTCTATCGTGTATCATCATCATCATCATCATCATCATCATTATCTTTATCTTTAGAAACCATTTGGCATTGGTAGTTGGCCCAGAAGAA
ATTATTTTAGGATGTTCTGATGGATAGATGCAAGACAATTAGTATGTTGTGATGGATTGGTGCAAGATGATTGTTGTCGCATCTGTCGATGTGCGATTATTTGTTATTTTATACATGATG
CCAAGTTTGTTGCCATCTTCTGTCTATTTTCTTGTTTCTCAGGATCAGATTTATCTTCTTTTGTTCCATTCCACATTTGACTCTGATCTCTTAAGCTATAACTATCACAATAAATAAGAT
GGTATCTCATAAAGTTTCTGGTACACATGTGTTAGGTGTGGTAATGAGAGTTTAGAGGTGTTGTTGTTCTCTTCAAGTAAATCTGATTATTATGTCCTACTGGGGGTATAAATCATGTAT
GGCATGCATATCCTAACAACTACATTACATAGGAATATACCTTCTTATTGATGTCTTATGGTTTAGGTAAACAGCGTCAGTTTAGGGCTGGAAGTTCGCTTTCCCTTCACATTATATCTT
GCGTTTGTTGATCTATCTTCTGTGCACATTGTTTCTTATGCAACATTGTATTCATTTCTTTAGTTGCTCTGCACCCAAGTGTCACGCGATAATTGTGCTCCAACTTGCCAATTGATCCCT
ATTTCTTCTTCTGTATAGATGTGAGAACATTGTTTATCTCTTCATATCCTTTGGTTAAACTATATATTTCTGTAGGTCACTCTTCTTTCTAGTAAGTAGCTACTGGTTGGGCATAATAAT
CAATATGATAGCTACGTGAAGGAACATGTACTGTTGTGTGTGATTGTGATTGAGTTAGAATCTGCATGTCTTCGTATTCTCATGATCCTTTCTAAAATATATTTTCATGCAAAATGACTC
AGTAGCACCAGTTTTCTTTCCCTGTGTGGGTGTATCCATGCAGTGTTAGTCATGGAGTTTTACGATGTGTTGTCTTTGTTTGTAGGACAAGCCTGAGCCTCCTCCAGAAGGCCGCCTTCC
TGATGCCACCCAAG
GTACAACCGTGAAAACATGTCTTATTGCTTTGTTAATTTTGGTACTGTACCATTTATGCAAGGGTGGAATGCTTTTAAGAATGTTATAAAATATCATCGTTTAGCA
TTTCGCAGTGTTACGCAGTGGTGACATTTCTACGTTATGGTGGGCATAGTTTATTACAGAACACTCTCTACTTTCTTGAGGCTAATTATTTCATTTCTTTATATTGCAAATCCAATACCA
AAATGTTTGGCCGCTTCTGGGAGCTTTGTGTAACCTCCAAAATTCTAAAATTTTCCGAGCAGTATCTCTGAATATATGGCTAGGCTGACATGTTGATATTACTATTGTGTCAGGCTCTGA
CCACCTCAGGCAGGTATTTTCCACTCAGATGGGTTTGAGCGACCAGGACATTGTTGCGCTTTCTGGTGGTCACACCCTG
GTTGGTCCAATTGTGCAATTAGCATATTTGTGTCATGCTTG
TTTGTAGGCTTGAAGAGTCCTGCTTATGCAGCTTCAATTATCATGTGCAGGGAAGGTGCCACAAGGAAAGATCTGGCTTTGAGGGAGCGTGGACTGCCAACCCTTTGATCTTTGACAACT
CGTACTTCAA
GTAAGAGTGATATCTGCTTTTTGAAAGCATGCGGCCTGTTTATTTGTATAAGAGTCCAAGCTGCCTCCGTGTTTTTTCCTGTTCATGATGTTCTTTTTTCCTCAACCGAA
AGTTTATATATCTTGACAGGGAGCTCCTGAGTGGCGAGAAGGAAGGCCTTCTTCAGTTGCCGACTGACAAAACCCTCCTGTCCGACCCGGCCTTCCGCCCACTCGTGGATAAATATGCTG
CG
GTACACCCTTGATCCTGGTTTCTTGTGTAGTTCTAGTTCACTGTTGGGTGGCTACCCCACCAATCCAGTACTGTATAAGCTTATCTGAGACATTTGATGCTGGTTAATGTTGCAGGAT
GAGGATGCTTTCTTTGCTGACTATGCTGAGGCACACCTGAAGCTCTCTGAGTTGGG
GTAAGTAACACGATCATCGTTCTCGTTGATGCATCATTGAAATGACTTGCTAGCGCAACATTGT
CAGAAAGTAGACCCCCTTGTTGATTGTTTCCAGATTTGGCGGGTACTTCGAAGGTTGTTGCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCCGCCAAGTGCTACCCAACAGTCACCGATGAGTACCAGACGGCCGTCGCCAAGGCCAAGCGCAAGCTCCGCGGCCTCATCGCCGAGAAGAACTGCGCCCCTCTCATGCTGCGCCTCG
C
GTGGCACTCGGCGGGGACCTTCGACGTCGCCACCAAGACCGGCGGCCCCTTCGGAACCATCAAGTGCCCCGCGGAGCTCGCGCACGGCGCCAACGCGGGCCTCGACATCGCCGTCAGGC
TACTCGAGCCCATCAAGGACCAATTCCCCATCCTCTCCTACGCCGACTTCTACCAG
CTCGCTGGAGTCGTGGCCGTCGAGGTGACCGGCGGACCTGAGGTTCCATTCCACCCGGGCAGAC
AG
GACAAGCCTGAGCCTCCTCCAGAAGGCCGCCTTCCTGATGCCACCCAAGGCTCTGACCACCTCAGGCAGGTATTTTCCACTCAGATGGGTTTGAGCGACCAGGACATTGTTGCGCTTT
CTGGTGGTCACACCCTG
GGAAGGTGCCACAAGGAAAGATCTGGCTTTGAGGGAGCGTGGACTGCCAACCCTTTGATCTTTGACAACTCGTACTTCAAGGAGCTCCTGAGTGGCGAGAAGG
AAGGCCTTCTTCAGTTGCCGACTGACAAAACCCTCCTGTCCGACCCGGCCTTCCGCCCACTCGTGGATAAATATGCTGCG
GATGAGGATGCTTTCTTTGCTGACTATGCTGAGGCACACC
TGAAGCTCTCTGAGTTGGG
ATTTGGCGGGTACTTCGAAGGTTGTTGCTGA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCGCCCACAT TCAATTCAAT TCCCCATCGC GCAGCCATGG CCGCCAAGTG CTACCCAACA GTCACCGATG AGTACCAGAC GGCCGTCGCC AAGGCCAAGC GCAAGCTCCG CGGCCTCATC  GCCGAGAAGA ACTGCGCCCC TCTCATGCTG CGCCTCGCGT GGCACTCGGC GGGGACCTTC GACGTCGCCA CCAAGACCGG CGGCCCCTTC GGAACCATCA AGTGCCCCGC GGAGCTCGCG  CACGGCGCCA ACGCGGGCCT CGACATCGCC GTCAGGCTAC TCGAGCCCAT CAAGGACCAA TTCCCCATCC TCTCCTACGC CGACTTCTAC CAGCTCGCTG GAGTCGTGGC CGTCGAGGTG  ACCGGCGGAC CTGAGGTTCC ATTCCACCCG GGCAGACAGG ACAAGCCTGA GCCTCCTCCA GAAGGCCGCC TTCCTGATGC CACCCAAGGC TCTGACCACC TCAGGCAGGT ATTTTCCACT  CAGATGGGTT TGAGCGACCA GGACATTGTT GCGCTTTCTG GTGGTCACAC CCTGGGAAGG TGCCACAAGG AAAGATCTGG CTTTGAGGGA GCGTGGACTG CCAACCCTTT GATCTTTGAC  AACTCGTACT TCAAGGAGCT CCTGAGTGGC GAGAAGGAAG GCCTTCTTCA GTTGCCGACT GACAAAACCC TCCTGTCCGA CCCGGCCTTC CGCCCACTCG TGGATAAATA TGCTGCGGAT  GAGGATGCTT TCTTTGCTGA CTATGCTGAG GCACACCTGA AGCTCTCTGA GTTGGGATTT GGCGGGTACT TCGAAGGTTG TTGCTGATTC TGGTTTGGTG CATGAAGTTG GTATGAAGGC  GAAGAAGAAG AATAAAATTG TGGGCCTGAG GCCATGTGAT GTGTTGTTTG GATTTGGTTA GATGGACGTT GGAATTCCAT TGTGTTGCTT GCTTGACATC TATGAGCATA TTGTTGGAGG  GACGATGGAA ATGTTATGTA ACTTACCTGT TCCCTCCGTC TAAGATGAAC CGGAAATTTG TTTACCCTCT GTCGGCTGGG TTCATTTCTG GAACCAAATT TCACTGTTTT AATTATTTTG  TCTTGGTGTC AGCTTGTTTG TTCACGACCA TTCGTGCATC TTTTTTTGTT TCTTGTCAAA TAGTTTTTAC ACTTATAAAG ATTTTACACT CACAAAGATT TGAGTTTACA TTTGTAAAGA  TCTGAGTTGG TGGTCGCGAG TTCATTCTAA CAAGACAACT ACTTAAGGCT ATAGGAATCA TCTAATTGTG ACTCATTTTA TACGTATCAT GATCTTTTGA CTATGGTTGA TTGGTTTTCA 
TGACTTTCAA GAGTAATTGT ATTTTTCAAA AATAATAT 

Retrieve as FASTA