The peroxidases and oxidases database
Entry information : SmPrx[P]53a_16
Entry ID 7942
Creation 2011-01-26 (Toky Ramarohetra)
Last sequence changes 2011-02-17 (Toky Ramarohetra)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2011-08-11 (Christophe Dunand)
Peroxidase information: SmPrx[P]53a_16
Name SmPrx[P]53a_16
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx[P]53a_16
start..stop		 S start..stop
SmPrx[P]54a_16 508 0 1..251 1..251
SmPrx[P]53b_1 508 0 1..251 1..251
SmPrx52-2_1 509 0 1..251 96..346
SmPrx52-1_16 509 0 1..251 96..346
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1499861..1500261 401 N° 2 1499429..1499783 355  
complement(join(1499429..1499783,1499861..1500261))


exon

Literature and cross-references SmPrx[P]53a_16
DNA ref. Phytozome 12:   scaffold_16 (1503525..502418)
Protein sequence: SmPrx[P]53a_16
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   251
PWM (Da):   %s   26973.86  
PI (pH):   %s   7.8
Sequence 292
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCDASILLDSKGSIKSERDSDKNFGIRRLDFIDRIKSMLEAACPGVVSCADIIVLVARESIVFTGGPTIPVLTGRRDGTAASNAAADRLLPPATVSVDNFISLFASKGLSLDESVAIIGAHTIGVGHCVNIVNRLYPNQDSKIGLLFASRLRVQCPTANPRMLNNITVINNDMTNLVFDNQYFRDLMNGQGLFTIDSELALDSRTSPVVARFSTNQQLFLDTFSSAFVKLTSSNVLTGQSGQVRKYCHSVN

Retrieve as FASTA  
Remarks Partial sequence from genomic (Exon 1 is missing).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTAGTTCACTGAGTGGCAGTACTTTCGAACCTGTCCACTCTGTCCTGTCAAGACATTGCTGGACGTGAGCTTGACGAAAGCCGAAGAGAATGTGTCGAGGAAGAGCTGCTGGTTCGTAGA
GAAGCGCGCTACCACGGGCGACGTGCGGCTGTCCAGCGCAAGCTCCGAATCGATGGTGAAGAGCCCCTGCCCGTTCATAAGGTCCCGGAAGTACTGGTTGTCAAAGACGAGGTTGGTCAT
ATCGTTGTTGATCACTGTAATGTTGTTGAGCATCCGGGGATTGGCCGTCGGGCACTGGACTCTCAGCCGGCTCGCAAACAGGAGGCCGATCTTACTGTCCTGGTTTGGATAGAGCCGATT
CACAATGTTGACGCAGTGCCCGACTCCAATTGTGTGAGCTCCTGGAATGCAAAAGTACAGAAGTTCGGATCAATCGTCCTTGGAAAGTGTCCTGGAAAGAAAAGCCTTTGAGACGTACCG
ATGATTGCAACGCTTTCGTCGAGAGAGAGGCCCTTGGATGCGAAGAGGCTGATGAAGTTGTCGACGCTTACGGTTGCCGGAGGCAAGAGCCTGTCGGCTGCGGCGTTGGAAGCGGCTGTG
CCGTCTCTTCTTCCTGTGAGCACGGGGATGGTCGGGCCTCCGGTGAAGACGATGGATTCTCTGGCCACCAGAACGATGATGTCCGCGCACGAGACGACTCCCGGACAGGCGGCCTCCAGC
ATCGACTTGATCCTGTCGATGAAATCCAAGCGGCGGATGCCAAAGTTCTTGTCCGAGTCTCTTTCGCTTTTGATGGAACCTTTCGAGTCGAGCAAGATGGACGCGTCGCAACC

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTAGTTCACTGAGTGGCAGTACTTTCGAACCTGTCCACTCTGTCCTGTCAAGACATTGCTGGACGTGAGCTTGACGAAAGCCGAAGAGAATGTGTCGAGGAAGAGCTGCTGGTTCGTAGA
GAAGCGCGCTACCACGGGCGACGTGCGGCTGTCCAGCGCAAGCTCCGAATCGATGGTGAAGAGCCCCTGCCCGTTCATAAGGTCCCGGAAGTACTGGTTGTCAAAGACGAGGTTGGTCAT
ATCGTTGTTGATCACTGTAATGTTGTTGAGCATCCGGGGATTGGCCGTCGGGCACTGGACTCTCAGCCGGCTCGCAAACAGGAGGCCGATCTTACTGTCCTGGTTTGGATAGAGCCGATT
CACAATGTTGACGCAGTGCCCGACTCCAATTGTGTGAGCTCCGATGATTGCAACGCTTTCGTCGAGAGAGAGGCCCTTGGATGCGAAGAGGCTGATGAAGTTGTCGACGCTTACGGTTGC
CGGAGGCAAGAGCCTGTCGGCTGCGGCGTTGGAAGCGGCTGTGCCGTCTCTTCTTCCTGTGAGCACGGGGATGGTCGGGCCTCCGGTGAAGACGATGGATTCTCTGGCCACCAGAACGAT
GATGTCCGCGCACGAGACGACTCCCGGACAGGCGGCCTCCAGCATCGACTTGATCCTGTCGATGAAATCCAAGCGGCGGATGCCAAAGTTCTTGTCCGAGTCTCTTTCGCTTTTGATGGA
ACCTTTCGAGTCGAGCAAGATGGACGCGTCGCAACC

Retrieve as FASTA