Entry information : PtPrx[P]26 (POPTR_0017s06560 / Potri.017G038000)
Entry ID 7954
Creation 2011-01-28 (Christophe Dunand)
Last sequence changes 2011-03-03 (Catherine Mathe)
Sequence status theoretical translation / pseudogene
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx[P]26 (POPTR_0017s06560 / Potri.017G038000)
Name (synonym) PtPrx[P]26 (POPTR_0017s06560 / Potri.017G038000)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx[P]26
start..stop
S start..stop
PtPrx26 217 3e-72 1..113 212..328
PtrePrx13 209 4e-69 1..113 211..327
PtremPrx11 201 8e-69 5..113 1..113
PtPrx27 206 3e-68 2..113 212..327
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4988453..4988794 342  
join(4988453..4988794)


exon

Literature and cross-references PtPrx[P]26 (POPTR_0017s06560 / Potri.017G038000)
DNA ref. Phytozome 12:   scaffold_17 (4988453..4988794)
Omic ref. ePlant:   Potri.017G038000
Protein sequence: PtPrx[P]26 (POPTR_0017s06560 / Potri.017G038000)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   113
PWM (Da):   %s   12443.23  
PI (pH):   %s   6.58
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

VLGSQDPALD SEYAARKCRS LNDNTTIVEM DPGSSRTFDL SYYRLLLKRR GLFQSDSALT TNSTTLSFVN QLLQGSLENF FAEFADSMEK MGRINVKTGT VGEIRKQCAV VNS 

Retrieve as FASTA  
Remarks Pseudogen. Small part of Prx sequence. Missing 4 AA compared to PtPrx26
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTGCTGGGTT CTCAGGACCC AGCGCTAGAT AGCGAATACG CTGCGAGGAA GTGCAGAAGT CTTAATGACA ATACCACTAT AGTAGAAATG GACCCTGGAA GTTCCAGGAC ATTTGATCTT  AGCTACTACA GGCTCTTACT CAAGAGACGA GGTCTCTTCC AGTCTGATTC TGCCTTAACC ACAAACTCCA CTACATTGTC ATTCGTCAAC CAGCTGCTCC AAGGTTCACT TGAGAATTTC 
TTTGCTGAAT TCGCAGATTC CATGGAGAAA ATGGGCAGAA TCAACGTTAA GACTGGCACA GTTGGAGAGA TCAGAAAGCA GTGTGCAGTG GTGAATAGCT AA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTGCTGGGTT CTCAGGACCC AGCGCTAGAT AGCGAATACG CTGCGAGGAA GTGCAGAAGT CTTAATGACA ATACCACTAT AGTAGAAATG GACCCTGGAA GTTCCAGGAC ATTTGATCTT  AGCTACTACA GGCTCTTACT CAAGAGACGA GGTCTCTTCC AGTCTGATTC TGCCTTAACC ACAAACTCCA CTACATTGTC ATTCGTCAAC CAGCTGCTCC AAGGTTCACT TGAGAATTTC 
TTTGCTGAAT TCGCAGATTC CATGGAGAAA ATGGGCAGAA TCAACGTTAA GACTGGCACA GTTGGAGAGA TCAGAAAGCA GTGTGCAGTG GTGAATAGCT AA 

Retrieve as FASTA