Entry information : SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Entry ID 7999
Creation 2011-02-09 (Toky Ramarohetra)
Last sequence changes 2011-03-03 (Nizar Fawal)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-04-28 (Christophe Dunand)
Peroxidase information: SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Name (synonym) SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Class Ascorbate peroxidase    [Orthogroup: APx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx09
start..stop
S start..stop
ZmAPx10 688 0 1..351 1..351
SiAPx04 630 0 1..351 1..353
OsAPx10 570 0 1..351 1..348
BdiAPx08 538 0 1..351 11..366
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 56404707..56404802 96 N° 2 56404894..56405010 117 N° 3 56405308..56405392 85 N° 4 56405489..56405523 35
N° 5 56405617..56405682 66 N° 6 56405763..56405802 40 N° 7 56405939..56406064 126 N° 8 56406182..56406288 107
N° 9 56406427..56406564 138 N° 10 56406720..56406854 135 N° 11 56406943..56407053 111  
join(56404707..56404802,56404894..56405010,56405308..56405392,56405489..56405523 ,56405617..56405682,56405763..56405802,56405939..56406064,56406182..56406288,564 06427..56406564,56406720..56406854,56406943..56407053)


exon

Literature and cross-references SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
DNA ref. Phytozome 12:   Chr06 (56404721..56407067)
Protein sequence: SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   351
PWM (Da):   %s   38137.48  
PI (pH):   %s   8.1
Sequence 392
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGASFLSTAPLVARGVAACSSISTPTRRHPHIRVCCRADAEGSEAAAHEERLRFRRRDFIGTCVGSAIGLELIDGSTRFSGVATAADLIERRQRSEFQSKIKDTLYVAIKAKPELVPSLLTLALNDAMTYDKATKTGGANGSIRLETSRPENSGLSAALDLLTEAKKEIDSFSKGGPISFADLIQFAAQSALKRSFLDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDRTFGRADAQEADPEGRVPEWSKASVQEMKDRFVAVGLGPRQLAVMSAFLGPDQAATEERLIADPDCRPWVEKYQRSRETVSRTDYEVDLITTLTKLSSFGQNINYEAYTYPKQKIDLGKLKL

Retrieve as FASTA  
Remarks Complete sequence from genomic. 6 ESTs. cultivar="BTx623"
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCGGGAGCGAGCTTCCTCTCGACCGCGCCGCTCGTTGCCCGCGGCGTCGCTGCCTGCTCTTCCATTTCGACTCCGACGCGGAGGCACCCGCACGTACGTACGCCCCCCGAACTTACTG
TTTTGCCCGTGCAGATTCCATTTCAGCTCCGACGTAATCGCGTGATCCTTGGTTTTGCCTGCGCAGATTCGAGTTTGCTGCCGGGCTGACGCTGAGGGCTCGGAGGCTGCTGCTCATGAA
GAGCGTCTGCGATTCCGCCGGAGAGATTTCATTGGCACCTGCGTCGGGAGCGCCATTGGTTTG
GTAAGTGGTAGTGCTACCATCCTGACAAAAGAACAATGCCCTTGTGCATTGGTGTTA
CAGAAGTAAACAAATGTAGCATTATGGGAGAGCTTCAAGTTGTTGCCCCAGCAAACTTTTTATCTCAGCTGCATCTAGTCACGCTCGAACTTATGCTGATGCTGAAAAGTATTATTCGCT
AATTTGTTCTGAGAGGAAAACAATGTACAAATGTGGTTATACTGTTTTAAGAGGAAAGACACCTTTTGTCTCAGTTCAGAGGTGATAAGCTGAACTTCGTTTATTTATGTCTTGGGTTAG

GAATTGATCGACGGTTCTACAAGATTCTCTGGAGTGGCTACTGCAGCTGATCTCATTGAGCGTAGACAACGGTCGGAGTTCCAGT
GTAGGTCATCTCATATTGTTAGTTCCATTGGCCCA
CTTGAATGCTAATGTTTCATTCTCACCATCGAAATTGAAGTCTTTTGACTGTTTTTTGCAGCAAAAATCAAAGATACGCTCTACGTAGCCATAAAGGTGAGACGCCTTAGTTTGTTGTAC
CTGGTGTTTTTCTTTCATCTATCTATCACTTCTGTTGCCTGAAACTGTGAACCTGATAATCTTTTGAAGGCTAAGCCAGAGCTCGTTCCATCATTGTTGACCTTGGCACTGAATGATGCC
ATGACATATGACAAG
GTCTGGTATCTGAATGGCTTTATATCATTAGCATTTGGGTCCCTCTGTTGGTTTAGAGAGTTGGTTTAATTCTTCTGCAGGCCACAAAAACTGGAGGAGCAAATG
GGTCTATCAGGCTAG
GTAGCAATTTCTTTTTCCTTTTCTCTTCTTCAGTTCTTCAGTTTGTTTTTTGTTTTGAGAGAAGAAAATGTTCAGCTGGAGATAATCCGTTGCGTTGCTCCACCA
TTTAATACTTAATTTTTCAAATAAAGCCCAGAAACAAGCAGACCTGAAAACAGTGGGCTCTCTGCTGCATTGGATTTGCTGACTGAAGCCAAAAAGGAGATAGATTCCTTTTCCAAGGGA
GGTCCCATTTCATTTGCAGATCTGATCCAGTTTGCAG
GTTCGACAATTTCCAGTGCAGTTTTACTACCATTATGAAACTTGTTGATCTTTACTGGCAAGCTCTTCCGTATATTGGCTTGT
TTTAAATTAAGAATTTTGTTTTTTCTTGAAACAGCACAATCAGCACTGAAGAGATCATTTCTTGACGCGGCCATTGCCAAATGTGGTGGAAATGAAGAGAAGGGAAGAACCCTATACTCT
GCATATGGTTCAAATGGGCAG
GTATGTACTGTGCCACATTGCTCCTTATGTCACATGATGCTTCATATGTTCAGTATACACTCTGTACAAGCTGCTCCTTATTTAACGTTTAAAATTATA
TTTTTTCTCTACGTTTGTTTTGACTATTTGCAACCACAGTGGGGTCTGTTCGATAGAACATTCGGGAGAGCAGATGCACAGGAAGCAGATCCAGAGGGAAGAGTGCCTGAGTGGAGCAAA
GCTTCTGTGCAGGAGATGAAGGATAGGTTCGTCGCTGTTGGGCTGGGTCCTCGCCAG
GTTACTACTACCACATCCTTATTAGATTGCTGAAATAAATTAACTGTCTTAACTTATCTCATT
ATTGTCATGACCATGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAAACCATGAACCAGTCTCACGTTTAATAGAAGATGGCTCTTTTTGCAGCTTGCTGTTATGTCAGCATTCCTTGGAC
CTGACCAGGCTGCTACCGAGGAACGACTGATAGCTGATCCAGATTGCCGTCCATGGGTGGAGAAGTACCAGCGGAGCCGCGAGACTGTCTCCCGGACTGACTACGAA
GTATGATTCATTG
ATGCGTATGTGCTGGCAATGCTCGGTATATCTTCTAGTGTTTATTCTAACTTGTGCTTATTTGTCTGTATGGCAGGTTGACCTGATTACCACACTCACAAAGCTGAGCTCCTTCGGCCAG
AACATAAACTATGAAGCCTACACATACCCTAAGCAAAAGATTGACCTGGGCAAATTGAAACTGTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCGGGAGCGAGCTTCCTCTCGACCGCGCCGCTCGTTGCCCGCGGCGTCGCTGCCTGCTCTTCCATTTCGACTCCGACGCGGAGGCACCCGCACATTCGAGTTTGCTGCCGGGCTGACG
CTGAGGGCTCGGAGGCTGCTGCTCATGAAGAGCGTCTGCGATTCCGCCGGAGAGATTTCATTGGCACCTGCGTCGGGAGCGCCATTGGTTTG
GAATTGATCGACGGTTCTACAAGATTCT
CTGGAGTGGCTACTGCAGCTGATCTCATTGAGCGTAGACAACGGTCGGAGTTCCAGT
CAAAAATCAAAGATACGCTCTACGTAGCCATAAAGGCTAAGCCAGAGCTCGTTCCATCATTGT
TGACCTTGGCACTGAATGATGCCATGACATATGACAAG
GCCACAAAAACTGGAGGAGCAAATGGGTCTATCAGGCTAGAAACAAGCAGACCTGAAAACAGTGGGCTCTCTGCTGCATTGG
ATTTGCTGACTGAAGCCAAAAAGGAGATAGATTCCTTTTCCAAGGGAGGTCCCATTTCATTTGCAGATCTGATCCAGTTTGCAG
CACAATCAGCACTGAAGAGATCATTTCTTGACGCGG
CCATTGCCAAATGTGGTGGAAATGAAGAGAAGGGAAGAACCCTATACTCTGCATATGGTTCAAATGGGCAG
TGGGGTCTGTTCGATAGAACATTCGGGAGAGCAGATGCACAGGAAGCAG
ATCCAGAGGGAAGAGTGCCTGAGTGGAGCAAAGCTTCTGTGCAGGAGATGAAGGATAGGTTCGTCGCTGTTGGGCTGGGTCCTCGCCAG
CTTGCTGTTATGTCAGCATTCCTTGGACCTG
ACCAGGCTGCTACCGAGGAACGACTGATAGCTGATCCAGATTGCCGTCCATGGGTGGAGAAGTACCAGCGGAGCCGCGAGACTGTCTCCCGGACTGACTACGAA
GTTGACCTGATTACCA
CACTCACAAAGCTGAGCTCCTTCGGCCAGAACATAAACTATGAAGCCTACACATACCCTAAGCAAAAGATTGACCTGGGCAAATTGAAACTGTAA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTTATCCTCG CGAGCTACTG CCGCACCAGC CTGCGAGCCT CCATTGAGAG CGCTCAACCA GCCATTGAGA GCGTCAGAGG TCAGTAGAGA AATGGCGGGA GCGAGCTTCC TCTCGACCGC  GCCGCTCGTT GCCCGCGGCG TCGCTGCCTG CTCTTCCATT TCGACTCCGA CGCGGAGGCA CCCGCACATT CGAGTTTGCT GCCGGGCTGA CGCTGAGGGC TCGGAGGCTG CTGCTCATGA  AGAGCGTCTG CGATTCCGCC GGAGAGATTT CATTGGCACC TGCGTCGGGA GCGCCATTGG TTTGGAATTG ATCGACGGTT CTACAAGATT CTCTGGAGTG GCTACTGCAG CTGATCTCAT  TGAGCGCAGA CAACGGTCGG AGTTCCAGTC AAAAATCAAA GATACGCTCT ACGTAGCCAT AAAGGCTAAG CCAGAGCTCG TTCCATCATT GTTGACCTTG GCACTGAATG ATGCCATGAC  ATATGACAAG GCCACAAAAA CTGGAGGAGC AAATGGGTCT ATCAGGCTAG AAACAAGCAG ACCTGAAAAC AGTGGGCTCT CTGCTGCATT GGATTTGCTG ACTGAAGCCA AAAAGGAGAT  AGATTCCTTT TCCAAGGGAG GTCCCATTTC ATTTGCAGAT CTGATCCAGT TTGCAGCACA ATCAGCACTG AAGAGATCAT TTCTTGACGC GGCCATTGCC AAATGTGGTG GAAATGAAGA  GAAGGGAAGA ACCCTATACT CTGCATATGG TTCAAATGGG CAGTGGGGTC TGTTCGATAG AACATTCGGG AGAGCAGATG CACAGGAAGC AGATCCAGAG GGAAGAGTGC CTGAGTGGAG  CAAAGCTTCT GTGCAGGAGA TGAAGGATAG GTTCGTCGCT GTTGGGCTGG GTCCTCGCCA GCTTGCTGTT ATGTCAGCAT TCCTTGGACC TGACCAGGCT GCTACCGAGG AACGACTGAT  AGCTGATCCA GATTGCCGTC CATGGGTGGA GAAGTACCAG CGGAGCCGCG AGACTGTCTC CCGGACTGAC TACGAAGTTG ACCTGATTAC CACACTCACA AAGCTGAGCT CCTTCGGCCA  GAACATAAAC TATGAAGCCT ACACATACCC TAAGCAAAAG ATTGACCTGG GCAAATTGAA ACTGTAAAGA TATTTGCCAG GCACCTGCAT CGGCCATACC CAGGATTCAG GAGCTCATAA  TATGGTAGGC TCTGGCTGCT AAAGAGTGAT TTGATTCGGC ACTGACGTTC ATGTATTGGC TACTCATCAG CTGTCAGACA TTCTTCCCCG GCAATTAGGA TGGTCCCTGT ACATGGTGAA  TTTGGTTCTC CGATTTTGTT TTGTGTGAGC CAAACGCTTG TGAGAAATGT GGTGTTGTGT AAATTCCTTT ACGTACGTGA GACTATTGAA GAATTAATAG AAACAAAGTG CAAGTTATAT 
GACTG 

Retrieve as FASTA