Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
289 (323) |
PWM (Da): |
30950.74 (35314.8) |
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PI (pH):
| 8.49 (5.78) |
Peptide Signal:
| cut: 32 range:32-354 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MGIVLGFLGN AAVSTQAQLE MGYYSKSCPE AEKIVRELSK xHIRNAHSLA AALLRMHFHD FFVGCDASVL LNSS*SNPAE RDSPPNFTMR GFDFIDRVKS LVEAEFPGIV SCADIIALAA
RDAIAATGGP FWRVPTVRRD GVISRASEAL SNIPSPSSKL NAPQTFFANK GLDLKDLVLP SGAHTIGASH CSSFRNRLYN FTGGEDQDPS LESGYAANLK AKKCRSLSND TIFRSDSAIT
TSPAAKLFIT QVLQGSLDNF YAQFALATEK MGRIDVKTGL AGEIRKHHAL
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Retrieve as FASTA
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Remarks |
Pseudogene from genomic (frame shift in exon 1, stop codon in frame, no splicing donor for the intron 3 and large fragment is missing in exon 4). No prediction from Phytozome. No EST.
join(9213307..9213494,9213672..9213863,9214052..9214214,9214370..9214695) |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT GCTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGTGAGAGA GTTGTCGAAG
ATnCACATCC GCAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCA CTTTCATGAT TTCTTCGTTG GGGTTTTTAC TTTCTCTCCC ATGTAGCTTG CATCAGTGCA CGTTAATACC
TTACAGCAAA CTTGAGAAAT TTGGAGGAAT CATTACTGCA TATCTCCATT TCAAGAGTAC TAGTATTTTC TTAATCTCAT GCTAGCTTTG AGAAATTTGA GCTCTTTGTT TGTTGATCAC
CGTCAGGGTT GTGATGCTTC TGTGCTCTTG AACTCTAGTT GAAGCAACCC AGCAGAGAGA GATTCTCCTC CAAACTTCAC TATGAGAGGC TTCGACTTCA TCGATCGAGT GAAGAGCCTT
GTCGAAGCTG AATTCCCCGG GATTGTCTCT TGCGCAGACA TCATAGCTTT GGCCGCAAGA GATGCAATAG CGGCCACTAT GAGGACAACA GCACAAAGAT TATTTCCACG AAAGCAGATA
TCCATTGTTC AAGTGCGTCT AGATCTTAAC ACTACGTGGA AACTGTTTTC TCCACTGATG ATGGAATGAG GATAGATTTG CAAGCGAAAA AAGCATTGAG ATTGAGTGGG GAATTAAAAC
TGTATCTGAT ATGCATGAAA CTATAGGGAG GTCCATTTTG GAGAGTTCCT ACTGTAAGAA GAGATGGAGT GATTTCAAGG GCATCGGAAG CATTGAGCAA CATCCCTTCT CCATCCAGCA
AACTCAACGC TCCCCAAACA TTTTTCGCCA ATAAAGGACT CGATCTTAAA GACTTAGTTT TACCGTCCGG TGAGGCCATA TGTCACCCAC CTATAAAAAT GAGAGGATAT CAGTTGATGA
GTTAAACCAT TAGTATCGAG AGATAACGAA ATGTATATTC AGTACGTGAC TAAGCTGGTC ATGTGCTAAA TTAGTAGTGG CTGATGTGAC TTGTTCTGAC ATAGGAGCTC ACACGATTGG
TGCATCTCAC TGCTCGTCTT TCCGGAACCG CCTATACAAC TTCACTGGCG GTGAGGATCA AGACCCCTCC TTGGAAAGCG GGTACGCGGC GAATCTCAAG GCCAAGAAGT GCAGGAGCCT
GAGTAACGAT ACCATCTTTC GATCGGATTC TGCTATCACT ACCAGTCCTG CTGCCAAGCT CTTCATCACA CAAGTCCTTC AAGGGTCACT TGACAACTTC TACGCTCAAT TTGCCTTGGC
AACGGAGAAG ATGGGCCGGA TCGACGTGAA GACTGGGCTG GCGGGCGAGA TAAGGAAGCA TCATGCGCTG
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT GCTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGTGAGAGA GTTGTCGAAG
ATnCACATCC GCAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCA CTTTCATGAT TTCTTCGTTG GTTGTGATGC TTCTGTGCTC TTGAACTCTA GTTGAAGCAA CCCAGCAGAG
AGAGATTCTC CTCCAAACTT CACTATGAGA GGCTTCGACT TCATCGATCG AGTGAAGAGC CTTGTCGAAG CTGAATTCCC CGGGATTGTC TCTTGCGCAG ACATCATAGC TTTGGCCGCA
AGAGATGCAA TAGCGGCCAC TGGAGGTCCA TTTTGGAGAG TTCCTACTGT AAGAAGAGAT GGAGTGATTT CAAGGGCATC GGAAGCATTG AGCAACATCC CTTCTCCATC CAGCAAACTC
AACGCTCCCC AAACATTTTT CGCCAATAAA GGACTCGATC TTAAAGACTT AGTTTTACCG TCCGGAGCTC ACACGATTGG TGCATCTCAC TGCTCGTCTT TCCGGAACCG CCTATACAAC
TTCACTGGCG GTGAGGATCA AGACCCCTCC TTGGAAAGCG GGTACGCGGC GAATCTCAAG GCCAAGAAGT GCAGGAGCCT GAGTAACGAT ACCATCTTTC GATCGGATTC TGCTATCACT
ACCAGTCCTG CTGCCAAGCT CTTCATCACA CAAGTCCTTC AAGGGTCACT TGACAACTTC TACGCTCAAT TTGCCTTGGC AACGGAGAAG ATGGGCCGGA TCGACGTGAA GACTGGGCTG
GCGGGCGAGA TAAGGAAGCA TCATGCGCTG
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Retrieve as FASTA
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