Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
327 (301) |
| PWM (Da): |
34891.76 (32138.2) |
Transmb domain: |
i7-29o |
| PI (pH): |
8.88 (8.88) |
Peptide Signal: |
cut: 27 range:27-327 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MAAQKLLSLL VFQLALVAFI LDVANAQGLK IGFYKNTCPQ AEEIVKKAAA SFISRAPSLA APLLRMHFHD CFVRGCDGSV LLNSTSSNQA VSKPVTELSL RGYQVIDAAK DALExKKCPG
VVSCADILAL VARDAVSMMN GPFWQVPTGR RDGRVSNLQD ALNNLPGPAF SISALKSSFA AKGLSVKDLA VLSGGHTLGM SHCSSFTNRL YNFTGKNDAD PSMDPNYVAQ LKTKCKPNDA
TTIVEMDPGS AKKFDMDYYT LVSKRRGLFQ SDAALLTDST TNAYVQLQLT NKSTFAEDFG VSMVNMGNIG VLTGNSGEIR KKCYLVN
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Retrieve as FASTA
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| Remarks |
Complete sequence from genomic. Incorrect prediction (exon 1 and start of exon 2 are missing; Frame shift in exon 2 (extra a in "t gaa aaa aaa atg")), An X in protein due to N in DNA because of bad sequencing. No EST. join(9209692..9209913,9210359..9210548)
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DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTGCTC AGAAGCTTCT CTCTCTCCTG GTTTTCCAGC TCGCGCTCGT CGCTTTTATT CTCGACGTCG CCAATGCTCA AGGCCTCAAA ATAGGGTTCT ACAAGAATAC GTGCCCTCAG
GCTGAGGAGA TAGTTAAGAA AGCGGCGGCG AGCTTCATTT CTCGAGCCCC CTCTCTTGCC GCTCCTCTCT TGAGGATGCA TTTCCATGAC TGCTTCGTCA GGGTACTTCT ATTTTAGCGG
TTAAATCGAC TCGAGTGACC CCGTTGTCAT CAATTTCTTA ATTATTGCAT GTGGTTTCTT TGAATCAAAC ATATGCACAT CACTCCCCAC ATCATTAATT TGTTGCGAAA TAAGTTGTAG
CTATAATTAG TTGATGTGTA GAGATCTATC TTAATTAGAT AACCTGTTTT ATGTTAGTAT ACACATTTGC GTTCCTTAAA ACTATCCGTC TCTGGATAAT CAAACTTGAT TTTGGAGGAC
ACCTATGTTG TACGCAGTCA AATGTCTCGT TTTCCTGATT CGAAACTTTA TGTCATGAAA TGAGACAAAT TTACCATAAT TTACAAATTC ATGCAGAGGC AAGCACCTTT ACTAAGTTCT
AAAGTTCATC GTTTTTTTTT TTTTTTTTTT GCCTTCCTTT CCCTCTCTTT TTTGGGTTTA TTTACAGGGA TGTGATGGCT CTGTGCTACT GAATTCAACA TCTTCTAACC AAGCAGTTTC
CAAACCTGTC ACTGAGCTGT CACTGAGAGG ATACCAAGTC ATCGACGCAG CCAAAGATGC CCTTGAAAnn AAAAAATGTC CTGGTGTTGT GTCTTGTGCT GATATTCTTG CTCTAGTTGC
TCGTGATGCA GTTTCCATGG TAATTGATTA ATTAAAGATT CGATTCCTGT TGTATTCTAG CTAGGGATTT CTATAATGCT GGTCATCAAC GAAAATTGTT TCATAAATTC TATTTTTGTG
ATAAATCAAC ATTTTTTTTT TTATCAATGA TTTCAAATGG AATTGATTAT CGAATTTTAT TTCTGATGAG TGTGTCGATA GCGCAAACTG ATCAGAGTGC AAGTCATTTG CACAGGTTAA
AAACTTGGAC TCAACTAGTT CATGTGGTTT GCAAAGTGCT ACATGGGTCT TTGCGTCCAC GCCCCTAAAT AACAAGTGAT GTCAATTTAT GAAATGTGAC ATGATTTTTC TAAATCGTTG
GTTGGATAAC ACAGCTAATG GATATGGAAT TTCCAGTTTT TACTATGAAG GTATAGAGTA AGAATATCGA ATATCTTTAA CTTGTAATTG GATTCTGGTT TCAGATGAAC GGTCCATTTT
GGCAAGTCCC CACAGGAAGG AGGGATGGCA GAGTGTCTAA CCTCCAAGAT GCCTTGAACA ACTTGCCCGG TCCTGCTTTC AGCATTTCTG CGCTTAAATC GTCCTTTGCC GCGAAGGGTC
TCAGCGTCAA AGACCTTGCC GTTCTCTCAG GTACGAGACC AATCATAGTA CATATACCTA ACATTATTGA AAGTCCTAAT TATTAGTTCA TAATTTAAGT ACAGTGAAAT TAACGGTGTG
GTTGCATCGA TGATAATTCA GGGGGACACA CCCTCGGAAT GTCGCACTGT TCCTCCTTCA CGAACCGTCT GTACAACTTC ACCGGCAAGA ACGACGCCGA CCCATCCATG GACCCCAACT
ATGTCGCTCA GCTCAAGACC AAGTGCAAGC CGAACGACGC CACCACCATC GTCGAGATGG ACCCGGGGAG CGCCAAGAAG TTTGACATGG ACTACTACAC CCTCGTCTCC AAGAGGAGAG
GCCTCTTCCA GTCCGATGCC GCGCTGCTCA CCGACAGCAC CACCAACGCC TACGTGCAGC TCCAGCTGAC GAACAAATCG ACATTTGCCG AAGACTTTGG CGTGTCCATG GTGAACATGG
GCAACATCGG CGTTCTCACG GGCAATTCGG GCGAGATTAG GAAGAAATGC TATTTGGTTA ACTAA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTGCTC AGAAGCTTCT CTCTCTCCTG GTTTTCCAGC TCGCGCTCGT CGCTTTTATT CTCGACGTCG CCAATGCTCA AGGCCTCAAA ATAGGGTTCT ACAAGAATAC GTGCCCTCAG
GCTGAGGAGA TAGTTAAGAA AGCGGCGGCG AGCTTCATTT CTCGAGCCCC CTCTCTTGCC GCTCCTCTCT TGAGGATGCA TTTCCATGAC TGCTTCGTCA GGGGATGTGA TGGCTCTGTG
CTACTGAATT CAACATCTTC TAACCAAGCA GTTTCCAAAC CTGTCACTGA GCTGTCACTG AGAGGATACC AAGTCATCGA CGCAGCCAAA GATGCCCTTG AAAnnAAAAA ATGTCCTGGT
GTTGTGTCTT GTGCTGATAT TCTTGCTCTA GTTGCTCGTG ATGCAGTTTC CATGATGAAC GGTCCATTTT GGCAAGTCCC CACAGGAAGG AGGGATGGCA GAGTGTCTAA CCTCCAAGAT
GCCTTGAACA ACTTGCCCGG TCCTGCTTTC AGCATTTCTG CGCTTAAATC GTCCTTTGCC GCGAAGGGTC TCAGCGTCAA AGACCTTGCC GTTCTCTCAG GGGGACACAC CCTCGGAATG
TCGCACTGTT CCTCCTTCAC GAACCGTCTG TACAACTTCA CCGGCAAGAA CGACGCCGAC CCATCCATGG ACCCCAACTA TGTCGCTCAG CTCAAGACCA AGTGCAAGCC GAACGACGCC
ACCACCATCG TCGAGATGGA CCCGGGGAGC GCCAAGAAGT TTGACATGGA CTACTACACC CTCGTCTCCA AGAGGAGAGG CCTCTTCCAG TCCGATGCCG CGCTGCTCAC CGACAGCACC
ACCAACGCCT ACGTGCAGCT CCAGCTGACG AACAAATCGA CATTTGCCGA AGACTTTGGC GTGTCCATGG TGAACATGGG CAACATCGGC GTTCTCACGG GCAATTCGGG CGAGATTAGG
AAGAAATGCT ATTTGGTTAA CTAA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTGCTC AGAAGCTTCT CTCTCTCCTG GTTTTCCAGC TCGCGCTCGT CGCTTTTATT CTCGACGTCG CCAATGCTCA AGGCCTCAAA ATAGGGTTCT ACAAGAATAC GTGCCCTCAG
GCTGAGGAGA TAGTTAAGAA AGCGGCGGCG AGCTTCATTT CTCGAGCCCC CTCTCTTGCC GCTCCTCTCT TGAGGATGCA TTTCCATGAC TGCTTCGTCA GGGGATGTGA TGGCTCTGTG
CTACTGAATT CAACATCTTC TAACCAAGCA GTTTCCAAAC CTGTCACTGA GCTGTCACTG AGAGGATACC AAGTCATCGA CGCAGCCAAA GATGCCCTTG AAAnnAAAAA ATGTCCTGGT
GTTGTGTCTT GTGCTGATAT TCTTGCTCTA GTTGCTCGTG ATGCAGTTTC CATGATGAAC GGTCCATTTT GGCAAGTCCC CACAGGAAGG AGGGATGGCA GAGTGTCTAA CCTCCAAGAT
GCCTTGAACA ACTTGCCCGG TCCTGCTTTC AGCATTTCTG CGCTTAAATC GTCCTTTGCC GCGAAGGGTC TCAGCGTCAA AGACCTTGCC GTTCTCTCAG GGGGACACAC CCTCGGAATG
TCGCACTGTT CCTCCTTCAC GAACCGTCTG TACAACTTCA CCGGCAAGAA CGACGCCGAC CCATCCATGG ACCCCAACTA TGTCGCTCAG CTCAAGACCA AGTGCAAGCC GAACGACGCC
ACCACCATCG TCGAGATGGA CCCGGGGAGC GCCAAGAAGT TTGACATGGA CTACTACACC CTCGTCTCCA AGAGGAGAGG CCTCTTCCAG TCCGATGCCG CGCTGCTCAC CGACAGCACC
ACCAACGCCT ACGTGCAGCT CCAGCTGACG AACAAATCGA CATTTGCCGA AGACTTTGGC GTGTCCATGG TGAACATGGG CAACATCGGC GTTCTCACGG GCAATTCGGG CGAGATTAGG
AAGAAATGCT ATTTGGTTAA CTAA
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Retrieve as FASTA
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