Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
292 (275) |
PWM (Da): |
31469.04 (29797.1) |
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PI (pH):
| 8.59 (8.59) |
Peptide Signal:
| cut: 18 range:18-292 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MGIVLGFLGN IAVSTQAQLE MGYYSKSCPE AEKIARxVVE DHIRNAHSLA AALLRMRFHD LLRRQGCDAS VLLNSS*SNP AERDSPPNFT VRGFDFIDRV KSLVEAEYAR IVSCADIIAL
AARDAIVATG GPFWRVPTVR RDGVISRASE ALSNIPSPSS KLNAPQTFFA NKGLDLKDLV LSSGAHTIVA SHCSSFRNHL YNFTGGEDQD PSLESGYAAN LKAKKCRSLS NDTIFRSDSA
ITTSPATKLF ITQVLQGSLD NFYAQFVMAM EKMGRIDVKT GLAGEIRKHC AGE
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Retrieve as FASTA
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Remarks |
Pseudogene from genomic. Incorrect prediction from Phytozome (Frame shift in the exon 1, stop codon in frame and missing fragment in exon 4). No EST.
join(9235717..9235907,9236079..9236273,9236458..9236620,9236768..9237096) |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT ATTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGCGAGAGA nGTTGTCGAA
GATCACATCC GTAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCG CTTTCATGAT TTGCTTCGTC GGGGTTTTTA CTTTCTCTCC CATGTAGCTT GCATCAGTGC ACGTTAATAT
CTTACAGCAA ACTTGAGAAA TTTGGAGAAT CGTTACTGCA TATCTCCATT TCAAGAGTAC TAGTATTTTC TTAATCTCAT GCTAGCTTTG AGAAATTTGA GCTCGTCGTT TGTTGATCAC
CGTCAGGGTT GTGACGCTTC TGTGCTCTTG AACTCTAGTT GAAGCAACCC AGCAGAGAGA GATTCTCCTC CAAACTTCAC TGTGAGAGGC TTCGACTTCA TCGATCGAGT GAAGAGCCTT
GTCGAAGCTG AATATGCCAG GATTGTCTCT TGCGCAGACA TCATAGCTTT GGCCGCAAGA GATGCAATTG TGGCCACTAT AAGGACAACA GCACAAAGAT TATTTCCACG AAAGCAGATA
TCCATTGTTC AAGTGCGTCT AGATCTTAAC ACTACGTGAA AACTGTTTTC TCCACTGATG ATGGAATGAG TATAGATTTG CCAGCGAAAC ATTGAGATAG AGTGGGGAAT TAAAACTGTA
TCTGATGTGC ATGAAACTAT AGGGAGGTCC ATTTTGGAGA GTTCCTACAG TAAGAAGAGA TGGAGTAATT TCAAGGGCAT CGGAAGCATT GAGCAACATC CCTTCTCCAT CCAGCAAACT
CAACGCTCCC CAAACATTTT TCGCCAATAA AGGACTCGAT CTTAAAGACT TAGTTTTATC GTCCGGCGAG GCCATATGTC ACCCACCTAT AAAAATGAGA GGATATCAGT TGATGAGTTA
AACCATTAGT ATTGAGAGAT ATCGAAATGT ATATTCAGTA CGTTAGTCAT GTGCTAAATT AGTAGTGGCT GGTGTGACTC ATTCTGACAT AGGAGCTCAC ACGATTGTTG CATCTCACTG
CTCGTCTTTC CGGAACCACC TATACAACTT CACTGGCGGT GAGGATCAAG ACCCCTCCTT GGAAAGCGGG TACGCGGCGA ATCTCAAGGC CAAGAAGTGC AGGAGCCTGA GTAACGATAC
CATCTTTCGA TCGGATTCTG CTATCACTAC CAGTCCTGCT ACCAAGCTCT TCATCACACA AGTCCTTCAA GGGTCACTTG ACAACTTCTA CGCTCAATTT GTTATGGCAA TGGAGAAGAT
GGGCCGGATC GACGTGAAGA CTGGGCTGGC GGGCGAGATA AGGAAGCATT GTGCTGGTGA A
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT ATTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGCGAGAGA nGTTGTCGAA
GATCACATCC GTAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCG CTTTCATGAT TTGCTTCGTC GGCAGGGTTG TGACGCTTCT GTGCTCTTGA ACTCTAGTTG AAGCAACCCA
GCAGAGAGAG ATTCTCCTCC AAACTTCACT GTGAGAGGCT TCGACTTCAT CGATCGAGTG AAGAGCCTTG TCGAAGCTGA ATATGCCAGG ATTGTCTCTT GCGCAGACAT CATAGCTTTG
GCCGCAAGAG ATGCAATTGT GGCCACTGGA GGTCCATTTT GGAGAGTTCC TACAGTAAGA AGAGATGGAG TAATTTCAAG GGCATCGGAA GCATTGAGCA ACATCCCTTC TCCATCCAGC
AAACTCAACG CTCCCCAAAC ATTTTTCGCC AATAAAGGAC TCGATCTTAA AGACTTAGTT TTATCGTCCG GAGCTCACAC GATTGTTGCA TCTCACTGCT CGTCTTTCCG GAACCACCTA
TACAACTTCA CTGGCGGTGA GGATCAAGAC CCCTCCTTGG AAAGCGGGTA CGCGGCGAAT CTCAAGGCCA AGAAGTGCAG GAGCCTGAGT AACGATACCA TCTTTCGATC GGATTCTGCT
ATCACTACCA GTCCTGCTAC CAAGCTCTTC ATCACACAAG TCCTTCAAGG GTCACTTGAC AACTTCTACG CTCAATTTGT TATGGCAATG GAGAAGATGG GCCGGATCGA CGTGAAGACT
GGGCTGGCGG GCGAGATAAG GAAGCATTGT GCTGGTGAA
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Retrieve as FASTA
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