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Entry information : EgrPrx[P]164 ( Eucgr.K00809 / Egrandis_v1_0.050687m)
Entry ID 8047
Creation 2011-02-04 (Christophe Dunand)
Last sequence changes 2012-02-16 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-04-07 (Christophe Dunand)
Peroxidase information: EgrPrx[P]164 ( Eucgr.K00809 / Egrandis_v1_0.050687m)
Name (synonym) EgrPrx[P]164 ( Eucgr.K00809 / Egrandis_v1_0.050687m)
Class Class III peroxidase     [Orthogroup: Prx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrPrx[P]164
start..stop		 S start..stop
EguPrx[P]164 566 0 1..293 1..293
EguPrx[P]162 519 0 1..291 1..289
EcamPrx[P]162 514 0 1..291 7..295
EgrPrx[P]162 513 0 1..291 1..289
Literature and cross-references EgrPrx[P]164 ( Eucgr.K00809 / Egrandis_v1_0.050687m)
DNA ref. Phytozome 12:   scaffold_11 (9235717..9237096)
Protein sequence: EgrPrx[P]164 ( Eucgr.K00809 / Egrandis_v1_0.050687m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   292 (275)
PWM (Da):   %s   31469.04 (29797.1)  
PI (pH):   %s   8.59 (8.59) Peptide Signal:   %s   cut: 18 range:18-292
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGIVLGFLGN IAVSTQAQLE MGYYSKSCPE AEKIARxVVE DHIRNAHSLA AALLRMRFHD LLRRQGCDAS VLLNSS*SNP AERDSPPNFT VRGFDFIDRV KSLVEAEYAR IVSCADIIAL  AARDAIVATG GPFWRVPTVR RDGVISRASE ALSNIPSPSS KLNAPQTFFA NKGLDLKDLV LSSGAHTIVA SHCSSFRNHL YNFTGGEDQD PSLESGYAAN LKAKKCRSLS NDTIFRSDSA 
ITTSPATKLF ITQVLQGSLD NFYAQFVMAM EKMGRIDVKT GLAGEIRKHC AGE 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from Phytozome (Frame shift in the exon 1, stop codon in frame and missing fragment in exon 4). No EST.
join(9235717..9235907,9236079..9236273,9236458..9236620,9236768..9237096)
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT ATTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGCGAGAGA nGTTGTCGAA  GATCACATCC GTAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCG CTTTCATGAT TTGCTTCGTC GGGGTTTTTA CTTTCTCTCC CATGTAGCTT GCATCAGTGC ACGTTAATAT  CTTACAGCAA ACTTGAGAAA TTTGGAGAAT CGTTACTGCA TATCTCCATT TCAAGAGTAC TAGTATTTTC TTAATCTCAT GCTAGCTTTG AGAAATTTGA GCTCGTCGTT TGTTGATCAC  CGTCAGGGTT GTGACGCTTC TGTGCTCTTG AACTCTAGTT GAAGCAACCC AGCAGAGAGA GATTCTCCTC CAAACTTCAC TGTGAGAGGC TTCGACTTCA TCGATCGAGT GAAGAGCCTT  GTCGAAGCTG AATATGCCAG GATTGTCTCT TGCGCAGACA TCATAGCTTT GGCCGCAAGA GATGCAATTG TGGCCACTAT AAGGACAACA GCACAAAGAT TATTTCCACG AAAGCAGATA  TCCATTGTTC AAGTGCGTCT AGATCTTAAC ACTACGTGAA AACTGTTTTC TCCACTGATG ATGGAATGAG TATAGATTTG CCAGCGAAAC ATTGAGATAG AGTGGGGAAT TAAAACTGTA  TCTGATGTGC ATGAAACTAT AGGGAGGTCC ATTTTGGAGA GTTCCTACAG TAAGAAGAGA TGGAGTAATT TCAAGGGCAT CGGAAGCATT GAGCAACATC CCTTCTCCAT CCAGCAAACT  CAACGCTCCC CAAACATTTT TCGCCAATAA AGGACTCGAT CTTAAAGACT TAGTTTTATC GTCCGGCGAG GCCATATGTC ACCCACCTAT AAAAATGAGA GGATATCAGT TGATGAGTTA  AACCATTAGT ATTGAGAGAT ATCGAAATGT ATATTCAGTA CGTTAGTCAT GTGCTAAATT AGTAGTGGCT GGTGTGACTC ATTCTGACAT AGGAGCTCAC ACGATTGTTG CATCTCACTG  CTCGTCTTTC CGGAACCACC TATACAACTT CACTGGCGGT GAGGATCAAG ACCCCTCCTT GGAAAGCGGG TACGCGGCGA ATCTCAAGGC CAAGAAGTGC AGGAGCCTGA GTAACGATAC  CATCTTTCGA TCGGATTCTG CTATCACTAC CAGTCCTGCT ACCAAGCTCT TCATCACACA AGTCCTTCAA GGGTCACTTG ACAACTTCTA CGCTCAATTT GTTATGGCAA TGGAGAAGAT 
GGGCCGGATC GACGTGAAGA CTGGGCTGGC GGGCGAGATA AGGAAGCATT GTGCTGGTGA A 

Retrieve as FASTA  
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT ATTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGCGAGAGA nGTTGTCGAA  GATCACATCC GTAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCG CTTTCATGAT TTGCTTCGTC GGCAGGGTTG TGACGCTTCT GTGCTCTTGA ACTCTAGTTG AAGCAACCCA  GCAGAGAGAG ATTCTCCTCC AAACTTCACT GTGAGAGGCT TCGACTTCAT CGATCGAGTG AAGAGCCTTG TCGAAGCTGA ATATGCCAGG ATTGTCTCTT GCGCAGACAT CATAGCTTTG  GCCGCAAGAG ATGCAATTGT GGCCACTGGA GGTCCATTTT GGAGAGTTCC TACAGTAAGA AGAGATGGAG TAATTTCAAG GGCATCGGAA GCATTGAGCA ACATCCCTTC TCCATCCAGC  AAACTCAACG CTCCCCAAAC ATTTTTCGCC AATAAAGGAC TCGATCTTAA AGACTTAGTT TTATCGTCCG GAGCTCACAC GATTGTTGCA TCTCACTGCT CGTCTTTCCG GAACCACCTA  TACAACTTCA CTGGCGGTGA GGATCAAGAC CCCTCCTTGG AAAGCGGGTA CGCGGCGAAT CTCAAGGCCA AGAAGTGCAG GAGCCTGAGT AACGATACCA TCTTTCGATC GGATTCTGCT  ATCACTACCA GTCCTGCTAC CAAGCTCTTC ATCACACAAG TCCTTCAAGG GTCACTTGAC AACTTCTACG CTCAATTTGT TATGGCAATG GAGAAGATGG GCCGGATCGA CGTGAAGACT 
GGGCTGGCGG GCGAGATAAG GAAGCATTGT GCTGGTGAA 

Retrieve as FASTA