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Entry information : EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)
Entry ID 8079
Creation 2011-02-04 (Christophe Dunand)
Last sequence changes 2011-07-28 (Catherine Mathe)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-06-19 (Qiang Li)
Peroxidase information: EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)
Name (synonym) EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrAPx-R
start..stop		 S start..stop
EguAPx-R 692 0 1..342 1..342
EglAPx-R 691 0 1..342 1..342
EcamAPx-R 691 0 1..342 1..341
CsAPx-R 451 1.07e-160 16..342 10..335
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 29587959..29588190 230 N° 2 29588272..29588353 80 N° 3 29588964..29589091 126 N° 4 29589622..29589692 69
N° 5 29589875..29589917 41 N° 6 29589994..29590090 95 N° 7 29590261..29590344 82 N° 8 29590903..29591024 120
N° 9 29591385..29591451 65 N° 10 29591899..29592001 101  
join(29587959..29588190,29588272..29588353,29588964..29589091,29589622..29589692 ,29589875..29589917,29589994..29590090,29590261..29590344,29590903..29591024,295 91385..29591451,29591899..29592001)


exon

Literature and cross-references EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)
DNA ref. Phytozome 12:   scaffold_3 (29587959..29592001)
Protein sequence: EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   342 (298)
PWM (Da):   %s   36512.48 (32107.1)  
PI (pH):   %s   7.46 (8.78) Peptide Signal:   %s   cut: 34 range:34-331
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASPSPSTTHLSPLTCCSSSSSLSSHPSSRRTKFEFPANSQRSSPSPIASRAGAIASPSSSTPGAASSGDHAPVRGRSVAGLAATLPFLLQLRGYTEGIVADAAELDNDEYTMIKEEVRK
VVSKVKAAGVLRLVFHDAGTFEMGENSGGMNGSIVYELERPENAGLKKPVKILEKAKGEVDAKRPVSWADMIAVAGAEAVSVCGGPTIPVVLGRLDSMKPDPEGRLPEETLDALGLKQCF
QRKGLSTQELVALSGAHTLGSKGFGNPVVFDNSYYKVLLEKPWMSSAGMPSMIGLPSDRALVEDNECLRWIEKYANDQNLFFKDFENAYVKLVNSGARWRSL*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from Egrandis_v1_0.016593m where intron in PS is not predicted!!!. No EST. One other alternative transcript: Egrandis_v1_0.018459m (low identity for the PS when compared with PtAPx-R).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCACCGTCGCCGTCGACGACCCACCTCTCCCCACTCACCTGCTGCTCCTCCTCCTCCTCCCTTTCCTCCCATCCCTCTTCTCGCAGGACGAAATTCGAATTCCCCGCCAATTCC
CAACGGTCTTCTCCCTCCCCCATCGCCTCTCGCGCCGGAGCCATCGCCTCTCCCTCAAGCTCGACCCCCGGCGCCGCTTCTTCCGGTGACCACGCCCCCGTGCGCGGTCGATATGTTTCG
CGAATCCGGTCGATCGCGATCTTTCGGAGCTCGCAGCTGGAGACCGCGTCTCGAGGAGGAGGAGGAAGCTCATAGCCGTGGCGGGCCTGGCGGCCACATTGCCGTTTCTCCTTCAGCTGC
GCGGTTACACGGAGGGAATCGTCGCCGACGCCGCCGAGAGTAAGCTCGACGCTCTTTGCTTGACGAAAGTCCATGTCTTTATTGGTTGGAACGAATGAAACGGGAATTTCGAGGGAGATT
GAGATGCTTTTGAGCTTTGGAGTTGAGCCTGCGGAGCGAAAGAAGGCTATGCGTTTTCGTCGGTGGTCGGATTATGGGTTTTGCAGCTGCTTCTTCCGGTGATCAGTTTGTGTGTATGTG
TGCATGCTACGGAGTTGTCCCGCCGAAATGACGCTTTTTGCTTCCTTTAAAGGACTTACTTGCCGTTTAAAGTAGGAGGTCCAGGTGTGGTCCTTCGGATTATGAGATTTTAGTTTGTGT
TTCCGGCTTGCTCATTCACTGACTTCCTGGATTTTAGTATCTGTAAGCTGTAACTGTGAAGTGTCTTGTTTCTCAACATTGATGTTATGGACACCGCATTCAGCTGGGGAAAAACCATTT
TGGGTGATGGTTTGATGGGTCGAAATTGCGATTCGGAAGTACTAATTGGATAGGGCTGTGAGTTTGATATTTTGTTTATCGTGACCTTGGGGCTGCATCTGTATTTGTGTTGACTTGGGG
CATTTGGATATGTCCATGACTGTTGGTTTTTCATGTTCGTATATCAAAGATTAGATAATGATGAATACACGATGATAAAGGAAGAGGTCAGAAAGGTAGTTTCCAAGGTGAAGGCTGCTG
GTGTGCTTCGTTTGGTATTTCATGATGCTGGAACCTTTGAAATGGGTGAAAACTCAGAGGTATTTTACATGGACAGAAAGTTAAAGTTCTACAAATAATGATACTCGACATCAGTAACTG
TGCTCCATATCTCTGGCTACAATTTTTGAATGCCTACTAATCGATCCAAATTGTTTTATCCTCTTTTCCCCATAATTGAACTTTTGAGCTGAAGCTAAGATGATGCATATATTGATTTCA
TCTGAATTAGGGGGATATAGCTCTCATTTGCCAAAAAAGTTAGATAATCCTTGTAAATGGGCATAACTTTTTTTTGTCATGGTGGTTTACTAAATGAACAAGGGCAAGTAATTCTATGAC
TGTTAAAGCAACTACAGACTCTAATGGACCTTTATAAATGAATGATCAATCATGGAGAGCAGTATCATTCATACTACCTGTATTTGTGAACTAATGGTCATGTCCGATTCTTTTAATGCA
TGCACATACTTCTTTTGAGTTGAAAATTTTCTGCGTCGTGCTTTTTTGTCTGAGTATGGATTTCAATCCTCATATTGTAATTCTAATATGTTTTTGTGTCAATATCCAGGTGGTATGAAT
GGTTCCATAGTTTATGAACTTGAAAGGCCTGAAAATGCTGGGCTAAAAAAGCCTGTGAAGAGGTATGTTTTCTTTTATTACATCCTCAAGCTTAGCATCCATTCTGGAGATGCAACATTT
CATTTCAACTGGTGTACTCCCTCATGCATTTCTGGACTGCTAGAAGTTCCTGTATCTTATGTCTAGAACAGTCAACTCCGGTTCATCTTCAGGCTAACTCGTCAGTCATTGTGTTGTTGT
TTAGATACTAGAGAAAGCAAAGGGTGAGGTGGATGCAAAGAGACCAGAGGTGATTTTTTTGAGTGTTATATTCTATATGCTGATGGTATGATTGTGGTGATATAGATGGAACTTTCCTCT
CTCAGTATCCTGGGCAGACATGATAGCTGTGGCTGGAGCTGAAGCAGTTTCTGTTTGTGGAGGTCCAACTATTCCAGTTGTTCTGGGCAGACTTGACTCAATATGTAAGAAGCTATTTCC
AATTCAATTACTACTGTTCTGAAGATGCGTTGATGGCAGACAAAACATTATTTCACTCATTTAGTATTGTCAGTATTGCAAGATTCTTTGCATGTCTCCATCTTTGTGCATAGTCCCAAG
CTAATATTGGTTTGGTTTCATTTCTTTATTGAAGGAAGCCTGATCCTGAAGGAAGACTTCCCGAAGAAACTCTTGATGCTTTGGGTTTAAAGCAGTGTTTTCAGAGGAAGGGCTTATCTC
GTGAGTTGCTATCCCATGTACATGTCGAATGATGCTTGCAAATTAAATGAAGTATTGTTTATTGACTATTGCATATTGTTATGCATCTTACTGCTGATGGTTAAACTGTTTAATAGATAT
TTCACCGGTCAACATAGAATTGGTTGTTTAGTCAACTGTGATACGTTATGTTTTGCAATTTCAGGATGATAGATTCAGAGCCGCCACAACTGAGGGGAAACTTTGGGACAGCCTTTGCTA
AAACACACACACAAAACAACCCCAAAAAAGCAAGACAACTATGCTTCCTTCTGTGGCAATAAGCATTCCTTCTTTGTTTTTCCCCTCCATTCCAAAAAAATTATGCCCCCTCTATGAGTT
ATTATTCTGACAGTATTAGCTGCATGATTACAAAAATGAAGCTTTCGAAACAGACTAAGAACATGTTTGATTGTTCCTGCTATGGACTCTGTTTGATTTTTTTTTGCTATAGAAATCTGT
CCTTTCAGTTTCTTACACTATTCTGTAGTTTCTTCTCTCAGCAAAAGGAACATATTGATGTTGTCCTCATCCTCTCAGGACACAGGAACTTGTTGCATTATCTGGAGCCCATACCCTCGG
CAGTAAAGGTTTTGGGAATCCGGTTGTTTTTGACAATTCATACTACAAGGTTCTTCTAGAGAAACCCTGGATGTCTTCAGAGGTAGCGAAAAAACATTGATGGTTCTCATGTTCTTCTGT
TAGACTTTTTGCCGGACGTAGTTACGTTGGCCTACTGGTTCTAGTTTGTTGTAGGTAAAGCATTATTTGGCATGAAATTAGTCCTGCCATCAGCTTTCTAACCCAGGAAAAGATTCTATA
TCTGATACTATGGAGTCATAATTGTGGTATTGTTTCAATAGTTAGCTCTGATGCAGTGGAAATTTATTTAGTCTGTACTGGGAAAAGGTTATTCTCACTTTTTCTGTTGCAAAAGCGACC
TGAGTTTTTCTCATCGGTAATAGTTCTCACTTAAGCTTTGCTCTTAATTATCCCTTGCTTAATTTCCTTTTTCTCAATGCAGCTGGTATGCCAAGTATGATTGGACTTCCTTCTGATCGT
GCACTTGTTGAGGACAATGAATGCTTAAGAGGTTACTGATTTGATATCCCTACTATTTCCTTTTTACTAGGAAGATGGGAACAGTTTAGCCATATCTTTCTGGCCATAGACTATTATGGT
GAGATATATATATATCGCTGTCACTGGCACTTGTCAACTTTCAGGGATGCACCATTATTGCCACTTTTGATTTTCTTTTTCTCATGATTCTGGATAAAAGTTGGCTTTTGTCTTAATGAT
CCAGTTAAATCCACATTCCATAAATATGGGAGGTGCTATATTATCATGGCCTGTTTATGCTTCTGAGAAAGCAATGTAGAATGGAAATGTGCCGACACAACAAACATAAGTAGCCAGTCT
GAAGTAATTAGTATCACCTGATTTACTATGGATATTTTGCATGAGAATGTTCTGTTTAATGTGATATTTGTTTCTTTTATTTGCTCGATCATGATACCTATATATTTTATATATACAGAT
GGATTGAGAAATATGCAAATGATCAGAATTTGTTCTTCAAAGATTTTGAGAATGCTTATGTCAAGTTAGTGAATTCTGGTGCAAGGTGGAGGAGCTTGTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCACCGTCGCCGTCGACGACCCACCTCTCCCCACTCACCTGCTGCTCCTCCTCCTCCTCCCTTTCCTCCCATCCCTCTTCTCGCAGGACGAAATTCGAATTCCCCGCCAATTCC
CAACGGTCTTCTCCCTCCCCCATCGCCTCTCGCGCCGGAGCCATCGCCTCTCCCTCAAGCTCGACCCCCGGCGCCGCTTCTTCCGGTGACCACGCCCCCGTGCGCGGTCGATCCGTGGCG
GGCCTGGCGGCCACATTGCCGTTTCTCCTTCAGCTGCGCGGTTACACGGAGGGAATCGTCGCCGACGCCGCCGAATTAGATAATGATGAATACACGATGATAAAGGAAGAGGTCAGAAAG
GTAGTTTCCAAGGTGAAGGCTGCTGGTGTGCTTCGTTTGGTATTTCATGATGCTGGAACCTTTGAAATGGGTGAAAACTCAGGTGGTATGAATGGTTCCATAGTTTATGAACTTGAAAGG
CCTGAAAATGCTGGGCTAAAAAAGCCTGTGAAGATACTAGAGAAAGCAAAGGGTGAGGTGGATGCAAAGAGACCAGTATCCTGGGCAGACATGATAGCTGTGGCTGGAGCTGAAGCAGTT
TCTGTTTGTGGAGGTCCAACTATTCCAGTTGTTCTGGGCAGACTTGACTCAATGAAGCCTGATCCTGAAGGAAGACTTCCCGAAGAAACTCTTGATGCTTTGGGTTTAAAGCAGTGTTTT
CAGAGGAAGGGCTTATCGACACAGGAACTTGTTGCATTATCTGGAGCCCATACCCTCGGCAGTAAAGGTTTTGGGAATCCGGTTGTTTTTGACAATTCATACTACAAGGTTCTTCTAGAG
AAACCCTGGATGTCTTCAGCTGGTATGCCAAGTATGATTGGACTTCCTTCTGATCGTGCACTTGTTGAGGACAATGAATGCTTAAGATGGATTGAGAAATATGCAAATGATCAGAATTTG
TTCTTCAAAGATTTTGAGAATGCTTATGTCAAGTTAGTGAATTCTGGTGCAAGGTGGAGGAGCTTGTGA

Retrieve as FASTA