Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
182 |
PWM (Da): |
19706.22 |
Transmb domain: |
o153-175i |
PI (pH):
| 7.75 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
GGPTIDFVPG RKDSRVSPNE GRLPDANQGP PRLRDIFYRM GLSDKDIVAL SGAHTLGRKH PERSGFDGPW TQEPLKFDNS YFVELLKGDA EGLLKLPTDK ALLEDPAFRP YVELYAKDED
AFFRDYAISH KKLSELGFTP SSSGSKTVAN GAVLAQGAVG VAVAVAVVxI LSYFYEVRKK MK
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Retrieve as FASTA
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Remarks |
Pseudogene from genomic (7 exons, the two first are missing). Incorrect prediction from Phytozome (only two exons). No EST.
join(50947080..50947115,50947192..50947240,50948127..50948209,50948296..50948375,50948465..50948567,50949143..50949338) |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
GGAGGTCCCA CAATCGACTT TGTTCCCGGA AGAAAGGTAC TCTGTTTTAG CTGTATGTGA GCAAGATAAT TCTTACGAGT GCCTTATTCA TTAAGTTTTT TTCTATCTGC AGGATTCAAG
AGTTTCTCCA AACGAAGGAA GACTTCCAGA TGCTAATCAA GGTATTTTGT TGTGTCAACT TTCCCTTTGT TGTTTGGCCT CCCTTTATTT CTCTCCATCC CTCCCTCTAA ATATTATGGC
CTACCATGCT TCTTGTTGCT CCAGGCGAAA AGTTAAATAA CTATTTATTG TTTTTCTTAT GGTTGTGGCC TGTTAGTATT GAAATGTATG TCCATCTCAT CTGAATATCA ATTAGTAAGT
TTCCAGAGGA ATGATTTGAA TGAGATAAGA AGCGCAGTGG AAAAAGAGGT ATCGGAGCTA ACTGACATTC GGATGTTGTA CATCCCATCT AAATGTCAGT AAGTTTCCAG ATTAAGAACT
GCACAAGCAA AATGGGCACA GTGCCTATTT CATATGAGTC AGCTGTTGTG AACTCACTAC GAAGAATGAC TTGAGAGAGA AGTGCTGGGA TTTGAACTCT TGATCTGTCA TATGAAACAG
TGCTAGAATA CCCAACCTAA AAGTTTAAGC TGTGATGTGG AGAGAGACAA CATGTATATA AGAAAACTGA GCCATTAGGT GAGAGAGACT ATATGTGTAT GAGACTCATT ATGACCACGT
TTTCAGGGGA TGTTTGATTA TATTAAAAAC AATATTACTT CTCATGCAAA CCCAGTTTGA TATTTCACAT GATATTTTAC ATCTGCAACT CACTGTAGCT GATCGAAAGG AGGCTCAAAT
GAAAGGAGGC CTTCAACCGC AGCTTGGTTA AGCTTATCGA TTTGTGATAT TCACGTTTAA CAATCCACTG CCTATCCATA ACTTATCATA GCTCTAAATC CATAGGAGAT CTTTCATGCG
TTATAATTCT CTTATTGGTG AAATACACGT ACATTTTGCT TAAAGGGCAT TCGAAATTTT TTCTAAACTT GTCATTGCTG GATGTAGGTC CTCCACGTCT AAGGGACATC TTTTACAGGA
TGGGTCTCTC GGACAAGGAC ATAGTGGCCT TATCAGGGGC TCATACACTG GTAATTTCTA TTTCTGCTTG GATTTACATT CACGGTCAGC TGGGGATGCG CAACCACACT TGTTATTTTT
TTATTCTTGT GTCTAGGGAA GGAAACACCC GGAAAGATCT GGATTTGATG GTCCTTGGAC TCAGGAACCC CTTAAGTTTG ATAATTCCTA TTTTGTGTAA GGTTTCATCT TTTCACTGGA
TGCATTTTCT AAGTTTCGGT TGGAGCATTA TAGAGCCAGA TGCTAATTGA TCATTTTTGA CACAGCGAGT TGTTGAAAGG GGACGCAGAG GGGCTGCTGA AACTGCCAAC TGACAAGGCA
TTGCTGGAAG ATCCTGCATT TCGCCCTTAT GTTGAGTTGT ATGCGAAGTA AATAAGCTTT TCGCGTGGTC TGGTGACTCC ATTGATAAAT CTATAAAATC GAATTGCAGT TACAGGTTTT
CTTTTTGTAA ATTTGTTTTT GATGAAACTA CCCCGCCACA CCACTATTTC GTTTCCTTAT GCACCCGGTC TATAACCCTT TGATGCTACT GTCCTTGGTT TTGCCGAGAA TGAAAAGAGA
TGGAAAGTGT TTTTCATGGA ATTTATGCTG TGTAGGCTTG TGATGCTTAA AAGTAAGCAT TCACTCTGTT CCATCACTAT CTTCTATGTA GAGACCAGGA AATATTCATA ATGAGATCGC
ACATCAAATG TTGGGTAGAT ACATACATGT GTTGGGATGG ATATATTATG TGGTTCCCTG AAACCTCTAG GCTAGAGCAT CATTTTTGTG CTACTGGGAA CACCTGATTT GATATTTGAA
TTGGTTGTTG TTCCCGCAAC TCTCTCATGG TGGTTGGCAC GACCTTGAAA AGAGACAAAT GGACAATTTG ATACTGTGCT TTTTTTCCTC GTTTTCTTTT GCTATATGCT CTTCTTTCCC
TAATGTTGTC AAGCATGTGG CAGGATGAGG ATGCATTTTT CAGAGATTAT GCAATCTCGC ATAAGAAGCT CTCTGAACTG GGGTTCACGC CAAGTTCTTC AGGCAGCAAG ACAGTAGCGA
ATGGTGCCGT ATTGGCACAA GGTGCTGTTG GAGTGGCAGT GGCTGTGGCT GTGGTGAnnA TCTTGAGCTA CTTCTATGAA GTGCGCAAGA AAATGAAGTG A
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
GGAGGTCCCA CAATCGACTT TGTTCCCGGA AGAAAGGATT CAAGAGTTTC TCCAAACGAA GGAAGACTTC CAGATGCTAA TCAAGGTCCT CCACGTCTAA GGGACATCTT TTACAGGATG
GGTCTCTCGG ACAAGGACAT AGTGGCCTTA TCAGGGGCTC ATACACTGGG AAGGAAACAC CCGGAAAGAT CTGGATTTGA TGGTCCTTGG ACTCAGGAAC CCCTTAAGTT TGATAATTCC
TATTTTGTCG AGTTGTTGAA AGGGGACGCA GAGGGGCTGC TGAAACTGCC AACTGACAAG GCATTGCTGG AAGATCCTGC ATTTCGCCCT TATGTTGAGT TGTATGCGAA GGATGAGGAT
GCATTTTTCA GAGATTATGC AATCTCGCAT AAGAAGCTCT CTGAACTGGG GTTCACGCCA AGTTCTTCAG GCAGCAAGAC AGTAGCGAAT GGTGCCGTAT TGGCACAAGG TGCTGTTGGA
GTGGCAGTGG CTGTGGCTGT GGTGAnnATC TTGAGCTACT TCTATGAAGT GCGCAAGAAA ATGAAGTGA
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Retrieve as FASTA
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