Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
250 |
PWM (Da): |
26374.04 |
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PI (pH):
| 4.92 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
QGCNALVLLD GSTSEPSEQD TPPNRNLRCT ALQIxDLCDL VEKKCCRVVS CADIATIAAH DSIFLSGRPE YDVPLGRRDE LASASVNETT KNLPSPAQSA SQILAALAKK SFDATNVVTL
SGAHTIGLGH CGSFTDRLYP TPDPAMEKSF ARAxxxxCPT TNSTNTTVLD IQSPNRFDNR YFVNLVNxGL FTSDQDQYED PTTRDIVTSF AKDLELFFER FVLAMTKMGQ LGLLTGTKGE
IQARCSARNS
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Retrieve as FASTA
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Remarks |
Pseudogene from genomic. Incorrect prediction from phytozome (exon 1 is missing, frame shift in the exon 2, 2 frame shift in the exon 4). No EST.
join(31505357..31505550,31505620..31506165). |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CAGGGATGCA ATGCTTTGGT GTTGCTGGAT GGATCAACGA GTGAACCGAG CGAGCAGGAC ACCCCACCGA ATCGAAACTT GAGATGCACA GCGCTCCAAA TCATnGACCT GTGCGACCTC
GTGGAGAAGA AATGTTGTCG GGTAGTCTCT TGTGCTGACA TCGCCACCAT CGCCGCTCAC GATTCCATTT TCTTGGTAAA GTTGGATTTC TTTATCGGGG ATTAATTGTA AATAATGTGA
CCATGCATAA TATACTGTGT GCAGTCGGGC AGACCTGAGT ATGACGTGCC ATTGGGAAGG CGTGACGAAC TCGCTTCCGC GTCTGTAAAC GAGACCACAA AGAATTTACC TTCACCAGCT
CAGAGCGCCA GCCAAATTCT CGCTGCCCTA GCCAAGAAAA GCTTCGACGC CACCAATGTA GTGACACTCT CTGGAGCCCA CACCATCGGG CTTGGGCACT GTGGTAGCTT CACCGACCGG
CTCTACCCGA CCCCAGACCC CGCCATGGAG AAAAGTTTCG CCCGTGCATG nnnnnnnnnn TGCCCCACTA CAAACTCCAC GAACACCACA GTCCTGGACA TCCAATCGCC CAACCGATTC
GACAACAGGT ACTTTGTCAA TTTGGTGAAC TnnGGCCTGT TCACGTCGGA CCAAGATCAA TATGAGGACC CCACAACGAG GGACATCGTT ACTAGCTTCG CCAAGGACCT GGAATTGTTC
TTCGAGAGGT TTGTTCTCGC TATGACCAAG ATGGGGCAGC TTGGCCTGTT GACTGGGACG AAAGGAGAAA TCCAAGCCCG CTGCTCGGCC AGGAATTCCT AG
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CAGGGATGCA ATGCTTTGGT GTTGCTGGAT GGATCAACGA GTGAACCGAG CGAGCAGGAC ACCCCACCGA ATCGAAACTT GAGATGCACA GCGCTCCAAA TCATnGACCT GTGCGACCTC
GTGGAGAAGA AATGTTGTCG GGTAGTCTCT TGTGCTGACA TCGCCACCAT CGCCGCTCAC GATTCCATTT TCTTGTCGGG CAGACCTGAG TATGACGTGC CATTGGGAAG GCGTGACGAA
CTCGCTTCCG CGTCTGTAAA CGAGACCACA AAGAATTTAC CTTCACCAGC TCAGAGCGCC AGCCAAATTC TCGCTGCCCT AGCCAAGAAA AGCTTCGACG CCACCAATGT AGTGACACTC
TCTGGAGCCC ACACCATCGG GCTTGGGCAC TGTGGTAGCT TCACCGACCG GCTCTACCCG ACCCCAGACC CCGCCATGGA GAAAAGTTTC GCCCGTGCAT Gnnnnnnnnn nTGCCCCACT
ACAAACTCCA CGAACACCAC AGTCCTGGAC ATCCAATCGC CCAACCGATT CGACAACAGG TACTTTGTCA ATTTGGTGAA CTnnGGCCTG TTCACGTCGG ACCAAGATCA ATATGAGGAC
CCCACAACGA GGGACATCGT TACTAGCTTC GCCAAGGACC TGGAATTGTT CTTCGAGAGG TTTGTTCTCG CTATGACCAA GATGGGGCAG CTTGGCCTGT TGACTGGGAC GAAAGGAGAA
ATCCAAGCCC GCTGCTCGGC CAGGAATTCC TAG
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Retrieve as FASTA
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