Entry information : SmPrx[P]13a_215
Entry ID 8140
Creation 2011-02-23 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmPrx[P]13a_215
Name SmPrx[P]13a_215
Class Class III peroxidase     [Orthogroup: Prx038]*
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx[P]13a_215
start..stop
S start..stop
SmPrx14-1_0 297 5e-102 1..196 1..197
SmPrx13-1_0 297 5e-102 1..196 1..197
SmPrx13-2_57 292 3e-100 1..196 1..197
SmPrx14-2_57 284 6e-97 1..196 1..197
Literature and cross-references SmPrx[P]13a_215
DNA ref. Phytozome 12:   scaffold_215 (24015..23338)
Protein sequence: SmPrx[P]13a_215
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   213 (191)
PWM (Da):   %s   22993.69 (20629.3)  
PI (pH):   %s   6.66 (6.66) Peptide Signal:   %s   cut: 23 range:23-213
Sequence
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Send to Peroxiscan
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MESWRGNVLV LLLLSLSLGV LAHGESWDAS MAIHSYSRSF LQAERIIRDT LSxHTGWDRT IPAGVLRLHF HDCFIDGCDG SILLDSTPTD GTKVEKLSLx MSTRSFEMIK EAKQRLEAAF 
PGVVSCxDTL AIAARDSTVM RGGKYYQVPT RCYDGKVSIQ ECSNTLQSPF xGIASALIEN FKERGLSVQD LVILSGRNRF ELQSLSIQFV SSH 

Retrieve as FASTA  
Remarks Pseudogene (several frame shift, last exon is missing).
DNA
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ATGGAAAGTT GGAGAGGGAA CGTTTTGGTT TTGCTTCTGC TGTCACTGAG CTTGGGTGTT TTGGCTCACG GTGAGAGTTG GGACGCAAGT ATGGCTATCC ACAGCTACTC TAGATCCTTT  CTTCAGGCCG AGAGGATCAT CAGGGACACT CTGAGCAGnC ACACTGGTTG GGACAGGACG ATACCAGCAG GTGTTCTTCG CTTGCACTTC CATGACTGTT TCATTGACAT GAGTAACTTT  ACAAGATTTA AATTCTGCTC TTCTAACTTC GCTGTTCTAG GGGTGTGATG GATCGATTCT TCTTGACTCA ACTCCCACCG ATGGAACTAA AGTGGAAAAA TTGTCACTTC nnATGTCTAC  CAGGAGCTTT GAGATGATCA AGGAAGCAAA GCAGAGGTTG GAAGCAGTAA GTTTAGCATC ATTTTTGGAA ATCCTGAATC AAGTTCCAAG ACGGGGAGGA AAATATTACC AAGTCCCAAC  CAGATGCTAC GATGGAAAAG TTTCCATCCA GGAATGCAGC AACACCTTAC AATCTCCGTT TTnnGGGATT GCGTCAGCTC TCATTGAAAA CTTCAAGGAG CGCGGTTTGT CAGTCCAGGA 
CCTTGTCATT CTCTCAGGTA GGAATCGATT TGAACTTCAG TCTCTTTCCA TCCAGTTTGT AAGTAG 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGAAAGTT GGAGAGGGAA CGTTTTGGTT TTGCTTCTGC TGTCACTGAG CTTGGGTGTT TTGGCTCACG GTGAGAGTTG GGACGCAAGT ATGGCTATCC ACAGCTACTC TAGATCCTTT  CTTCAGGCCG AGAGGATCAT CAGGGACACT CTGAGCAGnC ACACTGGTTG GGACAGGACG ATACCAGCAG GTGTTCTTCG CTTGCACTTC CATGACTGTT TCATTGACGG GTGTGATGGA  TCGATTCTTC TTGACTCAAC TCCCACCGAT GGAACTAAAG TGGAAAAATT GTCACTTCnn ATGTCTACCA GGAGCTTTGA GATGATCAAG GAAGCAAAGC AGAGGTTGGA AGCACGGGGA  GGAAAATATT ACCAAGTCCC AACCAGATGC TACGATGGAA AAGTTTCCAT CCAGGAATGC AGCAACACCT TACAATCTCC GTTTTnnGGG ATTGCGTCAG CTCTCATTGA AAACTTCAAG 
GAGCGCGGTT TGTCAGTCCA GGACCTTGTC ATTCTCTCAG GTAGGAATCG ATTTGAACTT CAGTCTCTTT CCATCCAGTT TGTAAGTAG 

Retrieve as FASTA