Entry information : SbPrx134 (Sobic.010G161600.1 [2.1] / SB10G021610 [1.4])
Entry ID 818
Creation 2006-01-04 (Christophe Dunand)
Last sequence changes 2006-01-04 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx134 (Sobic.010G161600.1 [2.1] / SB10G021610 [1.4])
Name (synonym) SbPrx134 (Sobic.010G161600.1 [2.1] / SB10G021610 [1.4])
Class Class III peroxidase    [Orthogroup: Prx090]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Cell culture
Embryos
Leaves
Roots
Inducers Abscissic acid treatment
Colletotrichum inoculation
Dark growth
Ethylene treatment
Heat shock stress
Light growth
Oxidative stress
Pathogen interaction
Phosphate starvation
Salt stress
Wounding
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx134
start..stop
S start..stop
SbPrx135 602 0 1..314 1..313
ZmPrx48 576 0 1..314 1..313
SiPrx37 560 0 1..314 1..311
CciPrx01 499 1.53e-180 1..314 1..307
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '818' 'join(47730540..47730746,47730824..47731003,47731143..47731700)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 47730540..47730746 205 N° 2 47730824..47731003 178 N° 3 47731143..47731700 556  
join(47730540..47730746,47730824..47731003,47731143..47731700)


exon

Literature and cross-references SbPrx134 (Sobic.010G161600.1 [2.1] / SB10G021610 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_10 (47730540..47731700)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.5842.1
Protein sequence: SbPrx134 (Sobic.010G161600.1 [2.1] / SB10G021610 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   314 (292)
PWM (Da):   %s   33098.33 (30874.2)  
PI (pH):   %s   7.89 (7.98) Peptide Signal:   %s   cut: 23 range:23-314
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPTLMQCLVAISLLSCVAHAQLSTTFYASSCPNLQSIVRRAMI
QALSNDQRMGASLLRLFFHDCFVQ
GCDGSILLDAGGEKTAGPNANSARGFEVIDTIKTNVEAACPGVVSCADILALAARDGTNLLGGPTWNVPLGRRDSTTASASLANSNLPQSTASLGTLISLFSRQGLSARDMTALSGAHTI
GQARCTTFRSRIYGDTNINASFAAALRQQTCPQSGGDGNLAPMDVQTPTRFDTDYYTNLLSQRGLFHSDQELFNGGSQDALVRQYSANPSLFNSDFMAAMIKMGNVGVLTGTAGQIRRNC
RVVNS*

Retrieve as FASTA  
Remarks Complete sequence from 154 ESTs and genomic (chromo 10, introns 1 and 2). Strongly expressed.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCTCCTACCTTGATGCAATGCTTGGTCGCCATTTCCCTCCTCTCCTGTGTCGCCCACGCACAGCTCTCGACCACGTTCTATGCATCCTCCTGCCCCAACCTGCAGAGCATCGTG
CGGAGGGCGATGATCCAGGCCCTCAGCAATGACCAGAGGATGGGCGCCTCTCTGCTCAGGCTCTTCTTCCACGACTGCTTTGTTCAA
AAGTACTAGCCTAGAATCCTCACACTATTCATC
AAGTTCTCCGGCAACAGTAGGCAATAACAGTATGTGATGATGACAGGGTTGCGACGGCTCGATCCTTCTCGACGCCGGAGGGGAGAAGACGGCCGGCCCCAACGCCAATTCGGCGCGCGG
CTTTGAGGTCATCGACACCATCAAGACCAACGTGGAGGCCGCGTGCCCCGGCGTCGTGTCGTGCGCCGACATCCTTGCCCTTGCCGCGCGAGACGGAACCAATCTG
TGGTACGCACGCCT
ACTAGTTCGTTCCTTTAATTACATGTCATATTCAGTTAGTTATCCGGTGTGTATAGTCGCGGTCAAGGGGAATATGACGACGCGTCTAACACTTATCCTTCGTTTCCTGTTGTCCGCACG
TACATAGCTCGGCGGGCCGACCTGGAACGTGCCGCTGGGCCGGCGGGACTCGACGACGGCGAGCGCGTCCCTTGCCAACAGCAACCTCCCGCAGTCGACGGCGAGCCTGGGTACGCTCAT
CTCGCTGTTCAGCAGGCAGGGCCTGTCGGCGCGCGACATGACGGCGCTGTCGGGCGCGCACACCATCGGGCAGGCCCGGTGCACCACCTTCCGCAGCCGCATCTACGGCGACACCAACAT
CAACGCCTCCTTCGCGGCGGCGCTCCGGCAGCAGACGTGCCCGCAGTCCGGCGGCGACGGCAACTTGGCGCCCATGGACGTGCAGACGCCGACGAGGTTCGACACGGACTACTACACCAA
CCTGCTGTCGCAACGGGGCCTGTTCCACTCGGACCAGGAGCTCTTCAACGGCGGGTCGCAGGACGCGCTGGTGAGGCAGTACAGCGCCAACCCCTCGCTCTTCAACAGCGACTTCATGGC
GGCCATGATTAAGATGGGCAACGTTGGGGTGCTAACCGGCACCGCCGGACAGATCAGGCGCAACTGCCGAGTCGTCAACAGCTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCTCCTACCTTGATGCAATGCTTGGTCGCCATTTCCCTCCTCTCCTGTGTCGCCCACGCACAGCTCTCGACCACGTTCTATGCATCCTCCTGCCCCAACCTGCAGAGCATCGTG
CGGAGGGCGATGATCCAGGCCCTCAGCAATGACCAGAGGATGGGCGCCTCTCTGCTCAGGCTCTTCTTCCACGACTGCTTTGTTCAA
GGTTGCGACGGCTCGATCCTTCTCGACGCCGGA
GGGGAGAAGACGGCCGGCCCCAACGCCAATTCGGCGCGCGGCTTTGAGGTCATCGACACCATCAAGACCAACGTGGAGGCCGCGTGCCCCGGCGTCGTGTCGTGCGCCGACATCCTTGCC
CTTGCCGCGCGAGACGGAACCAATCTG
CTCGGCGGGCCGACCTGGAACGTGCCGCTGGGCCGGCGGGACTCGACGACGGCGAGCGCGTCCCTTGCCAACAGCAACCTCCCGCAGTCGACG
GCGAGCCTGGGTACGCTCATCTCGCTGTTCAGCAGGCAGGGCCTGTCGGCGCGCGACATGACGGCGCTGTCGGGCGCGCACACCATCGGGCAGGCCCGGTGCACCACCTTCCGCAGCCGC
ATCTACGGCGACACCAACATCAACGCCTCCTTCGCGGCGGCGCTCCGGCAGCAGACGTGCCCGCAGTCCGGCGGCGACGGCAACTTGGCGCCCATGGACGTGCAGACGCCGACGAGGTTC
GACACGGACTACTACACCAACCTGCTGTCGCAACGGGGCCTGTTCCACTCGGACCAGGAGCTCTTCAACGGCGGGTCGCAGGACGCGCTGGTGAGGCAGTACAGCGCCAACCCCTCGCTC
TTCAACAGCGACTTCATGGCGGCCATGATTAAGATGGGCAACGTTGGGGTGCTAACCGGCACCGCCGGACAGATCAGGCGCAACTGCCGAGTCGTCAACAGCTAG

Retrieve as FASTA